Plant FIBer expression Database

Potri.003G023300 [POPLAR]


External link
JGI Phytozome v13PopgenieAspWood                  
Symbol
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT5G64550 717 / 0 loricrin-related (.1)
AT5G09670 644 / 0 loricrin-related (.1.2)
AT1G64140 432 / 1e-143 unknown protein
AT4G12020 212 / 5e-58 WRKY MEKK4, MAPKKK11, ATWRKY19, WRKY19 MAPK/ERK KINASE KINASE 4, MITOGEN-ACTIVATED PROTEIN KINASE KINASE KINASE 11, protein kinase family protein (.1.2.3)
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Potri.001G206600
[exp]
1066 / 0 AT5G64550 675 / 0.0 loricrin-related (.1)
Potri.001G097200
[exp]
439 / 6e-146 AT1G64140 718 / 0.0 unknown protein
Potri.003G134200
[exp]
427 / 3e-141 AT1G64140 690 / 0.0 unknown protein
Flax homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10019307
[exp]
714 / 0 AT5G64550 639 / 0.0 loricrin-related (.1)
Lus10011515
[exp]
707 / 0 AT5G64550 652 / 0.0 loricrin-related (.1)
Lus10032329
[exp]
433 / 1e-143 AT1G64140 690 / 0.0 unknown protein
Lus10024712
[exp]
237 / 2e-73 AT1G64140 298 / 2e-97 unknown protein
PFAM info
Representative CDS sequence
>Potri.003G023300.2 pacid=42784715 polypeptide=Potri.003G023300.2.p locus=Potri.003G023300 ID=Potri.003G023300.2.v4.1 annot-version=v4.1
ATGAATCTTAACAAAAAAGGTCTGCGATTTTCTAATAATAACGAGCTTCCAAAAAATGACTGTTTTGGTGATACTGCTTTGAGCTTGAACTGCCTTGGAT
ATGGAGGAAGCAGTTCGACCAATGCTGAGGGTGCTCAAAATAATCTTAAGGTTGATTTTTCTAATGGTTCTGATGATGGCTGCAAGTTGGTGCTTGGACT
TGGTCCGACACCAAGTGCATATTTTGATGATTGTTACTGCTTGGGGGTTAACAAAAAAAAAGGGCTGGATTCTGCTGTTATATTTCCCATGGGGTTGCTG
TCTGAGAGTGATTCAATCCTAAAACTTGGCCTTTCCGGAGGGGATAAGGAAGCCCTGAGTGGTCTCGACTATTCAATTTCAGAGACTGATACTAATACAC
CTATGCTGAACCAAATTTCTGATGATGACAGTAGATCCCTGATTCCTGTTGTCGATGAAGGTTCCACCTCAGCCAAGAAGTCTGGTGGCTATATGACGTC
ACTTCTTTTGGCTCCTAGAATGGATGTCAGAAAAGCTCCATCACAGACTGAACTTCTCAACTTTGGAACCAGATCTAATCATCAATTTCAGCTGAGCCAT
GAACTATCTGCTAACACAGATTTCTCCATGGGCATTATGTCTGAGCAAGCGATTTCAACCACTTCTTCTGACCACAGAACAAGCAATCCGAAGAAATGCA
AGTTCTTGGGTTGCTCAAAGGGAGCCCGTGGTGCTTCAGGCCTTTGTATTGGTCATGGGGGCGGACAGCGATGCCAGAAGCCGGGTTGCAACAAAGGTGC
TGAGAGCCGAACAGCCTATTGTAAGGTCCATGGTGGAGGAAGGAGGTGCCAACACTTGGGTTGCACTAAAAGTGCTGAGGGGAAGACAGATTTGTGCATT
GCACATGGTGGCGGCAGGAGATGTGGGTTTCCAGGCGGATGCACTAAGGCTGCAAGAGGCAAATCAGGGCTTTGTATTAGACATGGAGGGGGGAAGAGGT
GCAAGGTTGAAGACTGCACTCGTAGTGCTGAAGGACAGGCCGGGTTGTGCATTTCTCATGGGGGTGGGCGCCGTTGTGAACACCAAGGGTGTACAAAGGG
TGCTCAGGGGAGTACTGGGTACTGCAAAGCTCATGGTGGGGGAAAGCGATGCATATTTGCAGGATGCACCAAAGGAGCTGAAGGGAGCACGCCGCTGTGC
AAGGGACACGGTGGGGGAAAGCGCTGCATGTTTGATGGTGGTGGAATTTGCCCAAAAAGTGTTCATGGAGGCACAAACTTTTGTGTTGCCCATGGTGGTG
GAAAGAGGTGTGTTGTGCCAGGCTGTACAAAGAGTGCGCGTGGCCGTACTGATTGCTGTGTGAGGCATGGTGGAGGGAAGCGGTGCAGGGTTGACAACTG
TGGGAAGAGTGCCCAAGGTAGCACTGACTTCTGCAAAGCTCATGGTGGGGGTAAACGATGCACCTGGGGTGAGGGAAAATGCGAGAAGTTTGCCAGGGGT
AAGAGTGGTCTATGTGCTGCACACAGCAGCATGGTCCAAGAGAGGGAGGCAAACAGGACTGGTTTGATCAGACCGGGACTCTTCCATGGCCTTGTATCTG
CTGCTTCAACAGCAGGTAGCAGCATTGACAACAATCATTCATATTCTGGAGTTAGTGCTGTCTCGGACTGCAGTGATTCCCTAGAAAAGCCAGCAAAAAG
ACTACATCTCATACCACCCCAAGTACTGGTTCCTCATTCTATGAAGGCCACGTCGTCTTTTACAAGTTTTATGAATGCTGACAACTTAGAGGAAGGTACA
AATGGTTATGGTGCCACCAGTGGTGGGAAAAAGAATTTTGACTATCTGGTTCCCGAGGGAAGGGTGCATGGCGGCGGCCTTATGTCATTGTTTGGTGGAA
ATCTGAGGAATGCAATCAATGAAGTTTGA
AA sequence
>Potri.003G023300.2 pacid=42784715 polypeptide=Potri.003G023300.2.p locus=Potri.003G023300 ID=Potri.003G023300.2.v4.1 annot-version=v4.1
MNLNKKGLRFSNNNELPKNDCFGDTALSLNCLGYGGSSSTNAEGAQNNLKVDFSNGSDDGCKLVLGLGPTPSAYFDDCYCLGVNKKKGLDSAVIFPMGLL
SESDSILKLGLSGGDKEALSGLDYSISETDTNTPMLNQISDDDSRSLIPVVDEGSTSAKKSGGYMTSLLLAPRMDVRKAPSQTELLNFGTRSNHQFQLSH
ELSANTDFSMGIMSEQAISTTSSDHRTSNPKKCKFLGCSKGARGASGLCIGHGGGQRCQKPGCNKGAESRTAYCKVHGGGRRCQHLGCTKSAEGKTDLCI
AHGGGRRCGFPGGCTKAARGKSGLCIRHGGGKRCKVEDCTRSAEGQAGLCISHGGGRRCEHQGCTKGAQGSTGYCKAHGGGKRCIFAGCTKGAEGSTPLC
KGHGGGKRCMFDGGGICPKSVHGGTNFCVAHGGGKRCVVPGCTKSARGRTDCCVRHGGGKRCRVDNCGKSAQGSTDFCKAHGGGKRCTWGEGKCEKFARG
KSGLCAAHSSMVQEREANRTGLIRPGLFHGLVSAASTAGSSIDNNHSYSGVSAVSDCSDSLEKPAKRLHLIPPQVLVPHSMKATSSFTSFMNADNLEEGT
NGYGATSGGKKNFDYLVPEGRVHGGGLMSLFGGNLRNAINEV

DESeq2's median of ratios [POPLAR]

Mapped by: Order by: Show schematic diagram

Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol NWA:WTNWB:WTNWA:OE-ARK2NWB:OE-ARK2NWA:miRNA-ARK2NWB:miRNA-ARK2NW 0hrWT H20WT-NWTUA1dEY NWTUA1dEY+TUB15 NWTUA1dY+TUB9 NWPde NWNWA:WT GANWBWT GATW:WTTW:WT GANWA:OE-ARK2 GANWB:OE-ARK2 GATW:OE-ARK2TW:OE-ARK2 GANWA:miRNA-ARK2 GANWB:miRNA-ARK2 GATW:miRNA-ARK2TW:miRNA-ARK2 GATW 2hrTW 8hrTW 24hrTW 48hrTW 96hrTW 336hrWT ACC35S::etr1-1 H2035S::etr1-1 ACCLMX5::etr1-1 H20LMX5::etr1-1 ACCWT-TWTUA1dEY TWTUA1dEY+TUB15 TWTUA1dY+TUB9 TWPde TWOW:WTOW:WT GAOW:OE-ARK2OW:OE-ARK2 GAOW:miRNA-ARK2OW:miRNA-ARK2 GAOW 2hrOW 8hrOW 24hrOW 48hrOW 96hrOW 336hrRoot CTRRoot LongColdRoot LongDrougtRoot LongHeatRoot LongSaltRoot ShortColdRoot ShortDrougtRoot ShortHeatRoot ShortSaltPtr rootLeaf CTRLeaf LongColdLeaf LongDrougtLeaf LongHeatLeaf LongSaltLeaf ShortColdLeaf ShortDrougtLeaf ShortHeatLeaf ShortSaltPtr leafStem CTRStem LongColdStem LongDrougtStem LongHeatStem LongSaltStem ShortColdStem ShortDrougtStem ShortHeatStem ShortSaltPtr shootPtr xylemPtr phloemPtr fiberPtr vesselPtr fiber vessel ray
AT5G64550 loricrin-related (.1) Potri.003G023300
[exp]
0 1
AT3G09670 Tudor/PWWP/MBT superfamily pro... Potri.006G131800
[exp]
6.70 0.8388
AT2G43500 NLP8 Plant regulator RWP-RK family ... Potri.007G133400
[exp]
8.88 0.8401
AT5G45380 ATDUR3 DEGRADATION OF UREA 3, solute:... Potri.003G104000
[exp]
11.48 0.8292
AT5G16270 SYN4, ATRAD21.3 ARABIDOPSIS HOMOLOG OF RAD21 3... Potri.008G078500
[exp]
14.89 0.8394
AT1G64280 SAI1, NIM1, NPR... SALICYLIC ACID INSENSITIVE 1, ... Potri.006G148100
[exp]
15.49 0.8251 NPR1.1
AT5G13020 AtEML3, ACK1 EMSY-like 3, Emsy N Terminus (... Potri.001G229000
[exp]
21.97 0.8170
AT2G17440 PIRL5 plant intracellular ras group-... Potri.003G090100
[exp]
23.02 0.8091
AT3G22170 FAR1_related FHY3 far-red elongated hypocotyls 3... Potri.006G020700
[exp]
24.61 0.8211 Pt-FHY3.2
AT1G11340 S-locus lectin protein kinase ... Potri.011G035700
[exp]
28.49 0.7820
AT1G72040 P-loop containing nucleoside t... Potri.019G081600
[exp]
28.98 0.8118

Potri.003G023300 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.