Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G36050 520 / 0 Endoplasmic reticulum vesicle transporter protein (.1.2) AT1G22200 486 / 3e-172 Endoplasmic reticulum vesicle transporter protein (.1.2) AT3G22290 170 / 2e-49 Endoplasmic reticulum vesicle transporter protein (.1) AT3G20560 48 / 8e-06 ATPDI12, ATPDIL5-3 ARABIDOPSIS THALIANA PROTEIN DISULFIDE ISOMERASE 12, PDI-like 5-3 (.1) AT1G50950 47 / 2e-05 Thioredoxin protein with domain of unknown function (DUF1692) (.1) AT4G27080 45 / 7e-05 ATPDI7, ATPDIL5-4 ARABIDOPSIS THALIANA PROTEIN DISULFIDE ISOMERASE 7, PDI-like 5-4 (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G206100 [exp] 613 / 0 AT1G36050 540 / 0.0 Endoplasmic reticulum vesicle transporter protein (.1.2) Potri.005G168800 [exp] 525 / 0 AT1G36050 724 / 0.0 Endoplasmic reticulum vesicle transporter protein (.1.2) Potri.002G094400 [exp] 504 / 2e-179 AT1G36050 692 / 0.0 Endoplasmic reticulum vesicle transporter protein (.1.2) Potri.016G022800 [exp] 160 / 1e-45 AT3G22290 574 / 0.0 Endoplasmic reticulum vesicle transporter protein (.1) Potri.006G023900 [exp] 160 / 1e-45 AT3G22290 572 / 0.0 Endoplasmic reticulum vesicle transporter protein (.1) Potri.011G135500 [exp] 46 / 4e-05 AT4G27080 760 / 0.0 ARABIDOPSIS THALIANA PROTEIN DISULFIDE ISOMERASE 7, PDI-like 5-4 (.1.2) Potri.001G419300 [exp] 45 / 6e-05 AT3G20560 761 / 0.0 ARABIDOPSIS THALIANA PROTEIN DISULFIDE ISOMERASE 12, PDI-like 5-3 (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10036158 [exp] 512 / 0 AT1G36050 596 / 0.0 Endoplasmic reticulum vesicle transporter protein (.1.2) Lus10036449 [exp] 490 / 4e-173 AT1G36050 645 / 0.0 Endoplasmic reticulum vesicle transporter protein (.1.2) Lus10041121 [exp] 310 / 2e-104 AT1G36050 382 / 8e-133 Endoplasmic reticulum vesicle transporter protein (.1.2) Lus10003406 [exp] 283 / 5e-92 AT1G36050 325 / 2e-109 Endoplasmic reticulum vesicle transporter protein (.1.2) Lus10027795 [exp] 176 / 1e-51 AT3G22290 565 / 0.0 Endoplasmic reticulum vesicle transporter protein (.1) Lus10023828 [exp] 139 / 1e-37 AT3G22290 478 / 5e-170 Endoplasmic reticulum vesicle transporter protein (.1) Lus10035503 [exp] 139 / 4e-37 AT3G22290 442 / 1e-155 Endoplasmic reticulum vesicle transporter protein (.1) Lus10021024 [exp] 134 / 1e-35 AT3G22290 435 / 6e-153 Endoplasmic reticulum vesicle transporter protein (.1) Lus10019611 [exp] 42 / 0.0006 AT4G27080 664 / 0.0 ARABIDOPSIS THALIANA PROTEIN DISULFIDE ISOMERASE 7, PDI-like 5-4 (.1.2) Lus10043062 [exp] 42 / 0.0006 AT4G27080 698 / 0.0 ARABIDOPSIS THALIANA PROTEIN DISULFIDE ISOMERASE 7, PDI-like 5-4 (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF07970 [poplar] [flax] COPIIcoated_ERV Endoplasmic reticulum vesicle transporter PF13850 [poplar] [flax] ERGIC_N Endoplasmic Reticulum-Golgi Intermediate Compartment (ERGIC)
Representative CDS sequence Show only first row Show all	>Potri.003G023500.1 pacid=42786521 polypeptide=Potri.003G023500.1.p locus=Potri.003G023500 ID=Potri.003G023500.1.v4.1 annot-version=v4.1 ATGGACAGGATATATCAGAAAGTGCGGAATTTAGACGCGTATCCAAAAATAAACGAGGATTTCTACAGCCGTACTCTCTCCGGAGGCCTTATCACTCTCA TCTCTTCCGTTCTCATTCTTTTCCTCTTCTTCTCTGAACTCAGTTTGTATCTTCATAAGGTTACGGAGACAAAGCTTTTAGTGGATACTTCAAGAGGGCA AAGCCTACGCATCAATTTTGATGTCACTTTTCCTGCCATTCGATGTTCGTTGCTCAGTGTGGATGCCATAGATATCAGTGGAGAGCAGCATCTTGATATT AGGCATGATATATCTAAGAAAAGGATCAATGCTCATGGCGATGTAATTGAAGTCCGTCAGGAAGGGATTGGTGCTCCGAAGATTGACAGGCCTTTACAGA GCCATGGTGGCAGGCTTGGACATAATGAGGAATATTGTGGTTCGTGTTTTGGAGGCGAAATGTCACATGATGATTGTTGCAACACATGCGAAGAAGTTCG TGAAGCATATAGGAGAAAAGGGTGGGCGATGACAAATATGGATTTGATTGACCAATGCAAACGTGAAGGCTTTATCCAAATGATAAAAGACGAAGAAGGT GAAGGATGTAATATTAATGGATCCTTGGAAGTTAACAGAGTTGCTGGGAGTTTTCATTTTGCTCCTTGGAAAAGCTTCCATCTATCAAATTTTCTGATAC AGGATTTGCTGGATTTGCAAAAGGATAGTTATAATATAAGTCATAGGATCAATAGACTGGCTTTCGGTGACTACTTTCCAGGCGTGGTAAACCCCCTTGC TGGGATACAATTGATGCATGACACACCAAATGGCGTGCAGCAGTTTTTCATTAAGGTGGTCCCTACAATATACACTGATATTCGAGGCCGCACTGTGCAT TCGAATCAGTACTCTGCTACAGAGCATTTCAAGAAATCAGAATTGACACCCCTTGATTCTCTTCCTGGAGTTTACTTCTTCTATGACTTTTCTCCAATTA AGGTGATATTCAAAGAGGAGCACATTTCATTTTTACACTTCATGACAAGTATTTGTGCTATAATCGGAGGTATTTTCACAATTGCGGGAATAATTGATTC CTTCATATATTATGGTCAAAGAGCAATCACGAAGAAAGTGGGAATTGGCAAATTCGGCTGA
AA sequence Show only first row Show all	>Potri.003G023500.1 pacid=42786521 polypeptide=Potri.003G023500.1.p locus=Potri.003G023500 ID=Potri.003G023500.1.v4.1 annot-version=v4.1 MDRIYQKVRNLDAYPKINEDFYSRTLSGGLITLISSVLILFLFFSELSLYLHKVTETKLLVDTSRGQSLRINFDVTFPAIRCSLLSVDAIDISGEQHLDI RHDISKKRINAHGDVIEVRQEGIGAPKIDRPLQSHGGRLGHNEEYCGSCFGGEMSHDDCCNTCEEVREAYRRKGWAMTNMDLIDQCKREGFIQMIKDEEG EGCNINGSLEVNRVAGSFHFAPWKSFHLSNFLIQDLLDLQKDSYNISHRINRLAFGDYFPGVVNPLAGIQLMHDTPNGVQQFFIKVVPTIYTDIRGRTVH SNQYSATEHFKKSELTPLDSLPGVYFFYDFSPIKVIFKEEHISFLHFMTSICAIIGGIFTIAGIIDSFIYYGQRAITKKVGIGKFG

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT1G36050			Endoplasmic reticulum vesicle ...		Potri.003G023500 [exp]	0	1
AT5G28830			calcium-binding EF hand family...		Potri.005G052900 [exp]	5.29	0.7234
AT5G51750		ATSBT1.3	subtilase 1.3 (.1)		Potri.012G131500 [exp]	10.53	0.7341
AT5G09800			ARM repeat superfamily protein...		Potri.007G110600 [exp]	30.38	0.7122	PHOR1-2
AT4G31980			unknown protein		Potri.003G209100 [exp]	31.81	0.6896
AT3G20920			translocation protein-related ...		Potri.009G052800 [exp]	56.12	0.6623
AT4G36750			Quinone reductase family prote...		Potri.007G029600 [exp]	86.90	0.6681
AT1G16490	MYB	ATMYB58	myb domain protein 58 (.1)		Potri.005G096600 [exp]	96.93	0.6463
AT5G22930			Protein of unknown function (D...		Potri.008G032500 [exp]	118.32	0.6840

Compare expression of checked genes

Potri.003G023500 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.