Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G02645 440 / 1e-149 Plant protein of unknown function (DUF247) (.1) AT3G50150 104 / 1e-23 Plant protein of unknown function (DUF247) (.1) AT3G50130 104 / 1e-23 Plant protein of unknown function (DUF247) (.1) AT3G50180 103 / 3e-23 Plant protein of unknown function (DUF247) (.1) AT3G50170 100 / 2e-22 Plant protein of unknown function (DUF247) (.1), Plant protein of unknown function (DUF247) (.2) AT3G50120 98 / 2e-21 Plant protein of unknown function (DUF247) (.1) AT3G50140 94 / 5e-20 Plant protein of unknown function (DUF247) (.1) AT3G50160 91 / 3e-19 Plant protein of unknown function (DUF247) (.1) AT3G44710 86 / 1e-17 Plant protein of unknown function (DUF247) (.1) AT3G50190 79 / 3e-15 Plant protein of unknown function (DUF247) (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G205100 [exp] 801 / 0 AT3G02645 458 / 7e-157 Plant protein of unknown function (DUF247) (.1) Potri.017G062900 [exp] 712 / 0 AT3G02645 427 / 8e-145 Plant protein of unknown function (DUF247) (.1) Potri.001G337900 [exp] 638 / 0 AT3G02645 465 / 2e-159 Plant protein of unknown function (DUF247) (.1) Potri.001G337800 [exp] 601 / 0 AT3G02645 449 / 4e-153 Plant protein of unknown function (DUF247) (.1) Potri.009G085300 [exp] 595 / 0 AT3G02645 519 / 2e-180 Plant protein of unknown function (DUF247) (.1) Potri.017G124100 [exp] 570 / 0 AT3G02645 474 / 7e-163 Plant protein of unknown function (DUF247) (.1) Potri.003G205900 [exp] 381 / 3e-126 AT3G02645 332 / 2e-107 Plant protein of unknown function (DUF247) (.1) Potri.014G053700 [exp] 96 / 5e-21 AT3G60470 164 / 1e-44 Plant protein of unknown function (DUF247) (.1) Potri.007G047700 [exp] 92 / 2e-19 AT3G50120 721 / 0.0 Plant protein of unknown function (DUF247) (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10023185 [exp] 375 / 6e-124 AT3G02645 378 / 1e-125 Plant protein of unknown function (DUF247) (.1) Lus10015084 [exp] 363 / 2e-119 AT3G02645 382 / 4e-127 Plant protein of unknown function (DUF247) (.1) Lus10031159 [exp] 182 / 6e-51 AT3G02645 175 / 2e-48 Plant protein of unknown function (DUF247) (.1) Lus10009504 [exp] 176 / 1e-48 AT3G02645 196 / 3e-56 Plant protein of unknown function (DUF247) (.1) Lus10022538 [exp] 151 / 2e-39 AT3G02645 86 / 2e-17 Plant protein of unknown function (DUF247) (.1) Lus10016396 [exp] 137 / 3e-34 AT3G02645 111 / 1e-25 Plant protein of unknown function (DUF247) (.1) Lus10019721 [exp] 135 / 3e-33 AT3G02645 111 / 1e-25 Plant protein of unknown function (DUF247) (.1) Lus10033668 [exp] 98 / 2e-21 AT3G02645 165 / 8e-45 Plant protein of unknown function (DUF247) (.1) Lus10026964 [exp] 95 / 2e-20 AT3G02645 118 / 3e-28 Plant protein of unknown function (DUF247) (.1) Lus10011501 [exp] 89 / 3e-18 AT3G50120 716 / 0.0 Plant protein of unknown function (DUF247) (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF03140 [poplar] [flax] DUF247 Plant protein of unknown function
Representative CDS sequence Show only first row Show all	>Potri.003G024100.1 pacid=42784488 polypeptide=Potri.003G024100.1.p locus=Potri.003G024100 ID=Potri.003G024100.1.v4.1 annot-version=v4.1 ATGTCTTCCCACCAGCCCACCATGCCATGCAGTACTCGTTCGAATTCGGATTTCGACGAGTATCAATGGGTCATTAACATCGGACGAGCACTCGAGAAAG AGCTTGAAGAGGATTGTGATGAAAGCCCGGTGTGCATTTTTACTGTCCCCAAGACCTTAATGTCTTCCGATCCCCACTCTTATACTCCACAACAACTTTC ACTAGGCCCATACCATTATCGTCGTGCTGATCTTCACGAGATGGAGAGGTATAAGCTGTCAGCAGCCAAGAAACTGCAAAACCAACTTCAAAGCCACAGA TTTGAAAATCTCGTCGAGCAGTTGATAAAGCTTGAACCACAGATTAGGGCATGCTACCACAAGTACTTGGATTTTAATGCTGAAACGCTAGCGTGGATGA TGGCTTTGGATGTTTCGTTCTTGCTTGAGTTTCTTCAAATTTATTCTGTCAGAGAAACTAAGATGTTATCGAGGGCCCCGTCAGGAATGTCTCATTTGCT TGATTATTCGAAGAGGAAATCGGCTCATCATGTTATTCTCAGAGATATGGTGATGCTCGAGAATCAAGTTCCACAATTTATATTGAGAAAGGTGCTAGAG TTTCAATACATGTCAGCTGAATTAGCTGATGAAATGCTGCTGTCCATGGTTATAGGATTAGCTAAAGAGCTCTCCCCTTTCAAGATGATCGAGTTGCCAA AGACTACGGAAGTCTTGGAGCATTCCCACTTGCTAGACTTCTTGTATGACATTATCGTGCCCAAAGTGGAAGGACCGATCGAGATGGTACTTGAAGATGT TGCAGATCAGATCGAAAGCGATAATCAGCAAGAAGAAGAACGATCTGGGGTTGATTCAAGTTACGTGAAACAACTCCTCACCGTGACTTGGAATATGGTT TCACAACTAAAGATAACCCCAGTACGTTTGGTCAAGAACATTTCATCATCTATGGCGATCAAGTTGAAATTGTCTTGGACAATCCTATCTAAACTCAAAA ATCCTGATGACCATGAAAATGAGGACTCCAGTAGAAGCACGAAGAACAAGCCACCACTGGTAGAAGAGATCACAATTCCTTCAGTCACCCAGCTCTCAAA ATATGGTGTTTCCTTCATCCCTACAAAGGGTAACATCTCAACCATTGCTTTCGACAAAGAGAAGGCTGCATTTCACCTGCCCACAATTAGTTTAGATTCA AACAGTGAGGTGATGTTCAGAAACTTGGTAGCATATGAAATATCAAGTGCATCAGGGCCCTTGCTTTTTACTCGATACATAGAATTGATGAATGGGATCG TCGACACGGAGGAGGATGCAAGATTGCTTAGAGAAAGCGGCATTATTTTGAACCGTTTGAAGAGTGATGAAGAAGTGGCCAATATGCTGAATGGGATGAG CAACTGCAAGTGCATTAGATTGACGAAAGCTCCATTCTTAGATAAGGTGATTGAAGACGTGAACAAGTATTATGATAGCCTATGGATGGTGAGGATGAAA AGATTCATGAAGCGGTCTGTGTTCTGTTCATGGCAATATCTCACCATGTTGGCCGCCATTTTGCTCTTTCTCTTAATGGCCATGGAAGTGTTCTGCTCAT TTTATCAATGCGCTCGCATCTTTCACGTTGATATTTTTAACACTACCTCATCATGA
AA sequence Show only first row Show all	>Potri.003G024100.1 pacid=42784488 polypeptide=Potri.003G024100.1.p locus=Potri.003G024100 ID=Potri.003G024100.1.v4.1 annot-version=v4.1 MSSHQPTMPCSTRSNSDFDEYQWVINIGRALEKELEEDCDESPVCIFTVPKTLMSSDPHSYTPQQLSLGPYHYRRADLHEMERYKLSAAKKLQNQLQSHR FENLVEQLIKLEPQIRACYHKYLDFNAETLAWMMALDVSFLLEFLQIYSVRETKMLSRAPSGMSHLLDYSKRKSAHHVILRDMVMLENQVPQFILRKVLE FQYMSAELADEMLLSMVIGLAKELSPFKMIELPKTTEVLEHSHLLDFLYDIIVPKVEGPIEMVLEDVADQIESDNQQEEERSGVDSSYVKQLLTVTWNMV SQLKITPVRLVKNISSSMAIKLKLSWTILSKLKNPDDHENEDSSRSTKNKPPLVEEITIPSVTQLSKYGVSFIPTKGNISTIAFDKEKAAFHLPTISLDS NSEVMFRNLVAYEISSASGPLLFTRYIELMNGIVDTEEDARLLRESGIILNRLKSDEEVANMLNGMSNCKCIRLTKAPFLDKVIEDVNKYYDSLWMVRMK RFMKRSVFCSWQYLTMLAAILLFLLMAMEVFCSFYQCARIFHVDIFNTTSS

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT3G02645			Plant protein of unknown funct...		Potri.003G024100 [exp]	0	1
AT1G32450		NRT1.5	nitrate transporter 1.5 (.1)		Potri.001G145200 [exp]	20.09	0.8806
AT5G42250			Zinc-binding alcohol dehydroge...		Potri.002G013400 [exp]	26.40	0.8578
AT3G10985		WI12, ATWI-12, ...	ARABIDOPSIS THALIANA WOUND-IND...		Potri.019G125900 [exp]	26.94	0.8802
AT2G38290		AMT2;1, ATAMT2	AMMONIUM TRANSPORTER 2;1, ammo...		Potri.001G305400 [exp]	36.53	0.8804	1
AT5G50760			SAUR-like auxin-responsive pro...		Potri.001G060400 [exp]	38.70	0.8232
AT2G36690			2-oxoglutarate (2OG) and Fe(II...		Potri.010G231500 [exp]	38.83	0.8485
AT5G19790	AP2_ERF	RAP2.11	related to AP2 11 (.1)		Potri.019G036100 [exp]	39.79	0.8796
AT2G38940		PHT1;4, ATPT2	ARABIDOPSIS THALIANA PHOSPHATE...		Potri.010G071700 [exp]	44.39	0.8795	PtrPht1-2,PT2.9
AT4G27290			S-locus lectin protein kinase ...		Potri.011G125401 [exp]	51.57	0.8785
AT1G05300		ZIP5	zinc transporter 5 precursor (...		Potri.006G006800 [exp]	53.52	0.8739	Pt-ZIP4.4

Compare expression of checked genes

Potri.003G024100 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.