Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G60500 831 / 0 DRP4C Dynamin related protein 4C (.1) AT1G60530 432 / 4e-148 DRP4A Dynamin related protein 4A (.1) AT4G33650 163 / 5e-42 APEM1, DRP3A, ADL2 ABERRANT PEROXISOME MORPHOLOGY 1, ARABIDOPSIS DYNAMIN-LIKE 2, dynamin-related protein 3A (.1.2) AT2G14120 159 / 9e-41 DRP3B dynamin related protein (.1.2.3) AT1G14830 153 / 3e-39 DRP1C, ADL5, ADL1C DYNAMIN RELATED PROTEIN 1C, ARABIDOPSIS DYNAMIN-LIKE PROTEIN 5, DYNAMIN-like 1C (.1) AT3G60190 149 / 7e-38 ADL1E, ADL4, ADLP2, EDR3, DRP1E ENHANCED DISEASE RESISTANCE 3, DYNAMIN-RELATED PROTEIN 1E, DYNAMIN-LIKE PROTEIN 2, ARABIDOPSIS DYNAMIN-LIKE 4, DYNAMIN-like 1E (.1) AT2G44590 145 / 2e-36 ADL1D DYNAMIN-like 1D (.1.2.3) AT3G61760 145 / 2e-36 ADL1B DYNAMIN-like 1B (.1) AT5G42080 141 / 4e-35 RSW9, DRP1A, AG68, ADL1A, ADL1 RADIAL SWELLING 9, DYNAMIN-RELATED PROTEIN 1A, dynamin-like protein (.1.2.3) AT1G53140 77 / 3e-14 DRP5A Dynamin related protein 5A (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.003G024900 [exp] 1311 / 0 AT1G60500 827 / 0.0 Dynamin related protein 4C (.1) Potri.003G024600 [exp] 1302 / 0 AT1G60500 835 / 0.0 Dynamin related protein 4C (.1) Potri.001G095900 [exp] 951 / 0 AT1G60500 798 / 0.0 Dynamin related protein 4C (.1) Potri.013G124600 [exp] 942 / 0 AT1G60500 775 / 0.0 Dynamin related protein 4C (.1) Potri.013G119900 [exp] 939 / 0 AT1G60500 751 / 0.0 Dynamin related protein 4C (.1) Potri.013G120000 [exp] 930 / 0 AT1G60500 748 / 0.0 Dynamin related protein 4C (.1) Potri.003G024800 [exp] 878 / 0 AT1G60500 607 / 0.0 Dynamin related protein 4C (.1) Potri.010G105900 [exp] 159 / 2e-41 AT1G14830 1100 / 0.0 DYNAMIN RELATED PROTEIN 1C, ARABIDOPSIS DYNAMIN-LIKE PROTEIN 5, DYNAMIN-like 1C (.1) Potri.007G118300 [exp] 160 / 4e-41 AT4G33650 1067 / 0.0 ABERRANT PEROXISOME MORPHOLOGY 1, ARABIDOPSIS DYNAMIN-LIKE 2, dynamin-related protein 3A (.1.2)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10024334 [exp] 905 / 0 AT1G60500 771 / 0.0 Dynamin related protein 4C (.1) Lus10025903 [exp] 549 / 0 AT1G60500 466 / 1e-157 Dynamin related protein 4C (.1) Lus10014041 [exp] 152 / 2e-38 AT4G33650 1081 / 0.0 ABERRANT PEROXISOME MORPHOLOGY 1, ARABIDOPSIS DYNAMIN-LIKE 2, dynamin-related protein 3A (.1.2) Lus10019170 [exp] 150 / 3e-38 AT1G14830 1131 / 0.0 DYNAMIN RELATED PROTEIN 1C, ARABIDOPSIS DYNAMIN-LIKE PROTEIN 5, DYNAMIN-like 1C (.1) Lus10029001 [exp] 150 / 5e-38 AT1G14830 1061 / 0.0 DYNAMIN RELATED PROTEIN 1C, ARABIDOPSIS DYNAMIN-LIKE PROTEIN 5, DYNAMIN-like 1C (.1) Lus10027906 [exp] 145 / 5e-36 AT4G33650 1080 / 0.0 ABERRANT PEROXISOME MORPHOLOGY 1, ARABIDOPSIS DYNAMIN-LIKE 2, dynamin-related protein 3A (.1.2) Lus10019875 [exp] 144 / 1e-35 AT4G33650 1030 / 0.0 ABERRANT PEROXISOME MORPHOLOGY 1, ARABIDOPSIS DYNAMIN-LIKE 2, dynamin-related protein 3A (.1.2) Lus10002407 [exp] 144 / 1e-35 AT4G33650 1079 / 0.0 ABERRANT PEROXISOME MORPHOLOGY 1, ARABIDOPSIS DYNAMIN-LIKE 2, dynamin-related protein 3A (.1.2) Lus10012076 [exp] 143 / 4e-35 AT4G33650 1045 / 0.0 ABERRANT PEROXISOME MORPHOLOGY 1, ARABIDOPSIS DYNAMIN-LIKE 2, dynamin-related protein 3A (.1.2) Lus10003873 [exp] 137 / 6e-34 AT5G42080 1137 / 0.0 RADIAL SWELLING 9, DYNAMIN-RELATED PROTEIN 1A, dynamin-like protein (.1.2.3)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0023 [poplar] [flax] P-loop_NTPase PF00350 [poplar] [flax] Dynamin_N Dynamin family CL0023 [poplar] [flax] PF01031 [poplar] [flax] Dynamin_M Dynamin central region CL0023 [poplar] [flax] PF02212 [poplar] [flax] GED Dynamin GTPase effector domain
Representative CDS sequence Show only first row Show all	>Potri.003G024200.3 pacid=42786065 polypeptide=Potri.003G024200.3.p locus=Potri.003G024200 ID=Potri.003G024200.3.v4.1 annot-version=v4.1 ATGGGTGTAGTGCTTAATCATTGTGGTTCAAAGAGTGAAGAAATGTCGAATAGCTCGGAAAACGAAGTGGAATCACTTCCACAGATCATTGAAGAAAAGC ATCAAGAGCTGGTAGTCAGGCATGTCCCCATCGTATCATCATTCAATGAACGTATTCGACCTCTGCTTGATGCGGTTGACAAGCTTAGGCATCTCCAGGT CATGAAAGAAGGCATACAACTCCCCACCATTGTTGTTGTTGGTGATCAATCTTCAGGGAAATCTAGTGTTCTTGAATCACTAGCTGGTATCAGCCTCCCT CGTGGCCAGGGCATCTGCACCAGAGTACCTCTCATAATGAGGTTGCAACATCACACAGCTCCAGAACCAGAGCTTTCCTTGGAGTTCAATGGCAAAACAG TACCTACCAGCGAAGCCGAAATCGCCCATGCCATAATTCTTGCCACTGATGAGATTGCAGGCAATGCTAAGGGCATATCAAACACACCATTGACTCTGGT AGTGAAAAAGAATGGCGTTCCGGACCTTACAATGGTTGATCTCCCTGGAATCACTAGAGTTCCTGTCCATGGTCAGCCTGAAAACATCTATGAGCAGATA GCGGATATCATTATGGAGTACATAAGGCCTGAAGAGAGTATTATCCTTAATGTTTTGTCTGCAACTGTTGATTTTACCACTTGTGAATCTATTAGGATGT CACAGAAAGTGGATAAGAATGGTGAGAGGACTCTCGCCGCGGTCACCAAAGCAGACAGATCTCCAGAAGGACTGCTTGAGAAGGTTACGGCTGATGATGT GAATATAGGTCTGGGTTATGTCTGTGTCAGAAATCGTATTGGTGATGAATCTTACAAGGAAGCACGCAAGGAAGAAGCTGACTTGTTTGAAAATCATCCT CTTCTATCCAAGATTGATAAATCCATTGTGGGCATCCCAGTTTTGGCTCAAAAACTGGTTCAAATTCAAGCAACTATTATAGCAAGATGCTTGCCAGAGA TAGTGAGGAAGATTAATGAGAAGCTGAATGCAAGTATCTCGGAACTGAACAGGATGCCAAAGACTTTGTCCTCGGTTGGTGAAGCCCTGACAACTTTCAT GGGCATTGTTGGATCCGCCAAAGAGTCGCTAAACAAGATCATTGTGAGAGGAGAATATGATGAGTATCCAGAAGATAAAAATATGCATTGCACTGCCAGA TTCGTTGAAATGCTCAACCAATACTCAGGTGAACTTCGTAAGTGCTCTGAAAATGACCTTACAGGGAACTTTTTGATGGATGAGATTCAGGTTTTGGAGG AAGCCAAAGGGATTCAATTGCCAAATTTCCTTCCCCGCACCACCTTCCTTGCTATTCTGCAGAAAAAGGTTGAAAAGATATCACACATACCAGTTGCCTT TGTTGAGAAAGTGTGGACTTACATTGAAGGTGTGGTCATATCTGTTTTGATGCATCACTCGGAAAACTACCACCAGCTTCAGCTATCCACTCGACGAGCA GGCCATAATCTCATAGCAAGAATGAAAGAGCATTCTAGAAATTGGGTCACAGAGATTGTTCAAATGGAGAAACTGACAGATTATACAAGCAATCCTGAAT ACATGAATGACTGGAACAAGCTCATGGCTCAACAGCATGATTTCACGCGTGATGTCCTGGAAAAAGTGTACATTACTACATTCAAGATTGAAGGTTTGGG AGAGGTTCCAATTGCTGGTCTCAGGGGGTATGAGCAGCATGTTTTGCTTCAAGCTTTCGACTTGAAAATGAGAATGACTGCTTACTGGAAAATTGTTTTG AGGAGGTTGGTTGATTTTATGGCTCTGCATTTGCAGTTCTGTGCTCGAAATCTTGTGAACAAGGAAATGGAAGAGGAGATCGTCCAGGAGCTTGCCGGTA GACATGATGGTGCGATAGAAAGAATGTTAGAGGAATCTCCAGCTGTAGCTGCTAAGCGTGAGAAGCTGAATGTGAGCATCAAGTTGTTGAGGGAGTCCAA CAATGTCCTGGCAAACATCATGGACAAAATTGCTTCAAATATCTAG
AA sequence Show only first row Show all	>Potri.003G024200.3 pacid=42786065 polypeptide=Potri.003G024200.3.p locus=Potri.003G024200 ID=Potri.003G024200.3.v4.1 annot-version=v4.1 MGVVLNHCGSKSEEMSNSSENEVESLPQIIEEKHQELVVRHVPIVSSFNERIRPLLDAVDKLRHLQVMKEGIQLPTIVVVGDQSSGKSSVLESLAGISLP RGQGICTRVPLIMRLQHHTAPEPELSLEFNGKTVPTSEAEIAHAIILATDEIAGNAKGISNTPLTLVVKKNGVPDLTMVDLPGITRVPVHGQPENIYEQI ADIIMEYIRPEESIILNVLSATVDFTTCESIRMSQKVDKNGERTLAAVTKADRSPEGLLEKVTADDVNIGLGYVCVRNRIGDESYKEARKEEADLFENHP LLSKIDKSIVGIPVLAQKLVQIQATIIARCLPEIVRKINEKLNASISELNRMPKTLSSVGEALTTFMGIVGSAKESLNKIIVRGEYDEYPEDKNMHCTAR FVEMLNQYSGELRKCSENDLTGNFLMDEIQVLEEAKGIQLPNFLPRTTFLAILQKKVEKISHIPVAFVEKVWTYIEGVVISVLMHHSENYHQLQLSTRRA GHNLIARMKEHSRNWVTEIVQMEKLTDYTSNPEYMNDWNKLMAQQHDFTRDVLEKVYITTFKIEGLGEVPIAGLRGYEQHVLLQAFDLKMRMTAYWKIVL RRLVDFMALHLQFCARNLVNKEMEEEIVQELAGRHDGAIERMLEESPAVAAKREKLNVSIKLLRESNNVLANIMDKIASNI

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT1G60500		DRP4C	Dynamin related protein 4C (.1...		Potri.003G024200 [exp]	0	1
AT1G60500		DRP4C	Dynamin related protein 4C (.1...		Potri.003G024600 [exp]	1.00	0.9423
AT1G60500		DRP4C	Dynamin related protein 4C (.1...		Potri.003G024800 [exp]	4.24	0.8587
AT2G20560			DNAJ heat shock family protein...		Potri.007G135900 [exp]	5.47	0.8489
AT3G09032			unknown protein		Potri.006G097700 [exp]	6.92	0.7984
AT1G68330			unknown protein		Potri.008G122300 [exp]	7.07	0.8532
AT1G65810			P-loop containing nucleoside t...		Potri.004G077650 [exp]	9.16	0.8118
AT1G60500		DRP4C	Dynamin related protein 4C (.1...		Potri.003G024900 [exp]	11.48	0.8548
AT4G34160		CYCD3;1	CYCLIN D3;1 (.1)		Potri.002G123000 [exp]	12.04	0.7962	Pt-CYCD1.3
AT4G13540			unknown protein		Potri.008G174400 [exp]	12.68	0.8026
AT1G65810			P-loop containing nucleoside t...		Potri.004G077700 [exp]	12.96	0.8127

Compare expression of checked genes

Potri.003G024200 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.