Plant FIBer expression Database

Potri.003G024966 [POPLAR]


External link
JGI Phytozome v13PopgenieAspWood                  
Symbol
Arabidopsis homologues

No hit found

Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Flax homologues

No hit found
PFAM info
Representative CDS sequence
>Potri.003G024966.1 pacid=42786296 polypeptide=Potri.003G024966.1.p locus=Potri.003G024966 ID=Potri.003G024966.1.v4.1 annot-version=v4.1
ATGGGTTGGCTGTTGCAGCTGCTTGGCTGGCCTTTCATCACCTGTTTTTTTAGGATTGATGGGTTGTGGAGAGTTTTTGTTTGGCTGTGGCTCAACTTTT
GTTGTCAATGCAGAATCAAGCCCTTTTTCCCTGCTTTGTTTCTGCTATGCTCAGCTCTGTCACGACTGAGTTGGCTGTTGCAGCTTTGGGATCCTTGGGC
TGCATTTCTGCTGGGTCTATTGCAGGTTGTCTTGGCTTCTCTGCTGGTCTTTTTGTTTGCGTCAAGTCTGGCTTGGCTCAACCTCTTTATAGAAAGAGTT
GCCCTTCGGCTGTGGCTCAGCTTTTGA
AA sequence
>Potri.003G024966.1 pacid=42786296 polypeptide=Potri.003G024966.1.p locus=Potri.003G024966 ID=Potri.003G024966.1.v4.1 annot-version=v4.1
MGWLLQLLGWPFITCFFRIDGLWRVFVWLWLNFCCQCRIKPFFPALFLLCSALSRLSWLLQLWDPWAAFLLGLLQVVLASLLVFLFASSLAWLNLFIERV
ALRLWLSF

DESeq2's median of ratios [POPLAR]

Mapped by: Order by: Show schematic diagram

Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol NWA:WTNWB:WTNWA:OE-ARK2NWB:OE-ARK2NWA:miRNA-ARK2NWB:miRNA-ARK2NW 0hrWT H20WT-NWTUA1dEY NWTUA1dEY+TUB15 NWTUA1dY+TUB9 NWPde NWNWA:WT GANWBWT GATW:WTTW:WT GANWA:OE-ARK2 GANWB:OE-ARK2 GATW:OE-ARK2TW:OE-ARK2 GANWA:miRNA-ARK2 GANWB:miRNA-ARK2 GATW:miRNA-ARK2TW:miRNA-ARK2 GATW 2hrTW 8hrTW 24hrTW 48hrTW 96hrTW 336hrWT ACC35S::etr1-1 H2035S::etr1-1 ACCLMX5::etr1-1 H20LMX5::etr1-1 ACCWT-TWTUA1dEY TWTUA1dEY+TUB15 TWTUA1dY+TUB9 TWPde TWOW:WTOW:WT GAOW:OE-ARK2OW:OE-ARK2 GAOW:miRNA-ARK2OW:miRNA-ARK2 GAOW 2hrOW 8hrOW 24hrOW 48hrOW 96hrOW 336hrRoot CTRRoot LongColdRoot LongDrougtRoot LongHeatRoot LongSaltRoot ShortColdRoot ShortDrougtRoot ShortHeatRoot ShortSaltPtr rootLeaf CTRLeaf LongColdLeaf LongDrougtLeaf LongHeatLeaf LongSaltLeaf ShortColdLeaf ShortDrougtLeaf ShortHeatLeaf ShortSaltPtr leafStem CTRStem LongColdStem LongDrougtStem LongHeatStem LongSaltStem ShortColdStem ShortDrougtStem ShortHeatStem ShortSaltPtr shootPtr xylemPtr phloemPtr fiberPtr vesselPtr fiber vessel ray
Potri.003G024966
[exp]
0 1
AT1G75850 VPS35B VPS35 homolog B (.1) Potri.007G061520
[exp]
5.91 0.8383
AT2G24400 SAUR-like auxin-responsive pro... Potri.006G278100
[exp]
14.07 0.8100
AT1G04360 RING/U-box superfamily protein... Potri.008G165900
[exp]
14.14 0.8090
AT1G62440 LRX2 leucine-rich repeat/extensin 2... Potri.018G151000
[exp]
15.68 0.8421
AT1G23230 unknown protein Potri.010G108350
[exp]
25.76 0.8262
AT5G14180 MPL1 Myzus persicae-induced lipase ... Potri.001G332300
[exp]
30.74 0.7825
AT5G08391 Protein of unknown function (D... Potri.001G057900
[exp]
36.98 0.7654
AT1G14320 RPL10A, RPL10, ... SUPPRESSOR OF ACAULIS 52, ribo... Potri.013G159301
[exp]
44.83 0.8255
AT5G66680 DGL1 DEFECTIVE GLYCOSYLATION, dolic... Potri.004G157900
[exp]
54.49 0.8041
AT2G36530 ENO2, LOS2 LOW EXPRESSION OF OSMOTICALLY ... Potri.012G129300
[exp]
54.55 0.8012

Potri.003G024966 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.