Plant FIBer expression Database

Potri.003G025032 [POPLAR]


External link
JGI Phytozome v13PopgenieAspWood                  
Symbol
Arabidopsis homologues

No hit found

Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Flax homologues

No hit found
PFAM info
Representative CDS sequence
>Potri.003G025032.1 pacid=42784925 polypeptide=Potri.003G025032.1.p locus=Potri.003G025032 ID=Potri.003G025032.1.v4.1 annot-version=v4.1
ATGGATTTTTTACTTCTATTGTCAACTCATGTTGGGCTTTGTTGGCCTTTTGTGTTGGTTTTTGCAGCTTCTGTCCCTGTTTTCTCACCTTCTTTCGCAT
CAGGATTTGGAGGGCTATTTAACGGGTCATCTCTTTTGGTTCTCTCCTTAGAATTGTCTTACATTTTTTCTTTGTCTATTCGTTGCTTCCTTTTCCCCCT
GTTTCTAGCTTCCATTATTGCCCTCTTAAGTTTATTTTTTGTCCCCTGTAAGTTTGATTGCACTTCTTTATATGTTCTTCACGTTGTTATTTGCTTACCT
TTTGATCATGCTATTTTTTTTTTTCTGTGTTATTTTGGTCTTTGTTGCTTGGCTTTTGATCATGGTGCTTCTGTTGTTACCTTTTCTTTTCTTCCACTGT
GCATGATTTATTGGTCTTTCTTTGCCTATGCCTAA
AA sequence
>Potri.003G025032.1 pacid=42784925 polypeptide=Potri.003G025032.1.p locus=Potri.003G025032 ID=Potri.003G025032.1.v4.1 annot-version=v4.1
MDFLLLLSTHVGLCWPFVLVFAASVPVFSPSFASGFGGLFNGSSLLVLSLELSYIFSLSIRCFLFPLFLASIIALLSLFFVPCKFDCTSLYVLHVVICLP
FDHAIFFFLCYFGLCCLAFDHGASVVTFSFLPLCMIYWSFFAYA

DESeq2's median of ratios [POPLAR]

Mapped by: Order by: Show schematic diagram

Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol NWA:WTNWB:WTNWA:OE-ARK2NWB:OE-ARK2NWA:miRNA-ARK2NWB:miRNA-ARK2NW 0hrWT H20WT-NWTUA1dEY NWTUA1dEY+TUB15 NWTUA1dY+TUB9 NWPde NWNWA:WT GANWBWT GATW:WTTW:WT GANWA:OE-ARK2 GANWB:OE-ARK2 GATW:OE-ARK2TW:OE-ARK2 GANWA:miRNA-ARK2 GANWB:miRNA-ARK2 GATW:miRNA-ARK2TW:miRNA-ARK2 GATW 2hrTW 8hrTW 24hrTW 48hrTW 96hrTW 336hrWT ACC35S::etr1-1 H2035S::etr1-1 ACCLMX5::etr1-1 H20LMX5::etr1-1 ACCWT-TWTUA1dEY TWTUA1dEY+TUB15 TWTUA1dY+TUB9 TWPde TWOW:WTOW:WT GAOW:OE-ARK2OW:OE-ARK2 GAOW:miRNA-ARK2OW:miRNA-ARK2 GAOW 2hrOW 8hrOW 24hrOW 48hrOW 96hrOW 336hrRoot CTRRoot LongColdRoot LongDrougtRoot LongHeatRoot LongSaltRoot ShortColdRoot ShortDrougtRoot ShortHeatRoot ShortSaltPtr rootLeaf CTRLeaf LongColdLeaf LongDrougtLeaf LongHeatLeaf LongSaltLeaf ShortColdLeaf ShortDrougtLeaf ShortHeatLeaf ShortSaltPtr leafStem CTRStem LongColdStem LongDrougtStem LongHeatStem LongSaltStem ShortColdStem ShortDrougtStem ShortHeatStem ShortSaltPtr shootPtr xylemPtr phloemPtr fiberPtr vesselPtr fiber vessel ray
Potri.003G025032
[exp]
0 1
AT5G39390 Leucine-rich repeat protein ki... Potri.019G100901
[exp]
4.24 0.8001
AT5G66760 SDH1-1 succinate dehydrogenase 1-1 (.... Potri.005G123900
[exp]
7.14 0.7332
AT1G30220 ATINT2 ARABIDOPSIS THALIANA INOSITOL ... Potri.004G133420
[exp]
11.48 0.7702
AT5G54160 ATOMT1 O-methyltransferase 1 (.1) Potri.005G183800
[exp]
14.69 0.7643
AT5G05550 Trihelix sequence-specific DNA binding ... Potri.008G071300
[exp]
15.00 0.7719
AT5G05670 signal recognition particle bi... Potri.009G001600
[exp]
15.71 0.7468
AT5G41940 Ypt/Rab-GAP domain of gyp1p su... Potri.003G146300
[exp]
17.66 0.6902
AT5G10530 Concanavalin A-like lectin pro... Potri.001G283200
[exp]
19.07 0.7846
AT3G43660 Vacuolar iron transporter (VIT... Potri.011G146100
[exp]
20.66 0.7696
AT1G04270 RPS15 cytosolic ribosomal protein S1... Potri.005G055401
[exp]
22.49 0.7513

Potri.003G025032 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.