Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G15780 137 / 4e-39 unknown protein AT1G15790 103 / 4e-29 unknown protein AT2G10440 48 / 1e-07 unknown protein
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.003G028089 [exp] 185 / 5e-56 AT1G15780 223 / 5e-60 unknown protein Potri.003G012400 [exp] 182 / 1e-54 AT1G15780 557 / 2e-175 unknown protein Potri.001G204900 [exp] 173 / 2e-51 AT1G15780 575 / 0.0 unknown protein Potri.003G026510 [exp] 157 / 3e-51 AT1G15780 160 / 2e-46 unknown protein Potri.003G014156 [exp] 132 / 4e-42 AT1G15780 110 / 4e-30 unknown protein Potri.003G028245 [exp] 132 / 4e-42 AT1G15780 110 / 4e-30 unknown protein Potri.006G031200 [exp] 54 / 8e-10 AT1G15780 242 / 1e-65 unknown protein Potri.016G028200 [exp] 49 / 9e-08 AT1G15780 252 / 4e-69 unknown protein
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10025452 [exp] 153 / 2e-44 AT1G15780 248 / 3e-68 unknown protein Lus10015323 [exp] 151 / 6e-44 AT1G15780 587 / 0.0 unknown protein Lus10025448 [exp] 93 / 4e-25 AT1G15780 80 / 9e-18 unknown protein Lus10015321 [exp] 82 / 4e-20 AT1G15780 78 / 5e-16 unknown protein Lus10012027 [exp] 78 / 4e-18 AT4G12020 102 / 2e-24 MAPK/ERK KINASE KINASE 4, MITOGEN-ACTIVATED PROTEIN KINASE KINASE KINASE 11, protein kinase family protein (.1.2.3) Lus10015322 [exp] 77 / 1e-17 AT1G15780 164 / 1e-41 unknown protein Lus10023978 [exp] 71 / 3e-17 AT1G15780 71 / 4e-15 unknown protein
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0589 [poplar] [flax] KIX_like PF16987 [poplar] [flax] KIX_2 KIX domain
Representative CDS sequence Show only first row Show all	>Potri.003G025200.3 pacid=42785723 polypeptide=Potri.003G025200.3.p locus=Potri.003G025200 ID=Potri.003G025200.3.v4.1 annot-version=v4.1 ATGGACACAGGTGATTGGAGAACTCAATTGCAGCCTGACTCACGGCAAAGAATAGTCAACAAAATAATGGAGACATTAAAGAGGCATCTTCCGTTTTCTG GTCAAGAGGGATTACAAGAACTCAAGAAAATTGCTGTACGGTTTGAGGAAAAGATTTATACTGCCGCCACCAGTCAGTCTCATTATCTGCGTAAAATATC TCTGAAGATGCTTACAATAGAGACCAGGTCTCAGAATATCATACCCACAGGCAATGGTAACAAACCCCTGTATCCAGGGGGGAAGTGTGCAAAATCCAAG CTTTGA
AA sequence Show only first row Show all	>Potri.003G025200.3 pacid=42785723 polypeptide=Potri.003G025200.3.p locus=Potri.003G025200 ID=Potri.003G025200.3.v4.1 annot-version=v4.1 MDTGDWRTQLQPDSRQRIVNKIMETLKRHLPFSGQEGLQELKKIAVRFEEKIYTAATSQSHYLRKISLKMLTIETRSQNIIPTGNGNKPLYPGGKCAKSK L

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT1G15780			unknown protein		Potri.003G025200 [exp]	0	1
AT5G14250		CSN3, FUS11, CO...	FUSCA 11, COP9 SIGNALOSOME SUB...		Potri.017G066300 [exp]	2.23	0.8684
AT1G55840			Sec14p-like phosphatidylinosit...		Potri.001G369400 [exp]	2.44	0.7999
AT2G23090			Uncharacterised protein family...		Potri.001G296600 [exp]	2.82	0.8254
AT5G19680			Leucine-rich repeat (LRR) fami...		Potri.006G163900 [exp]	3.16	0.8120
AT1G29810			Transcriptional coactivator/pt...		Potri.011G078900 [exp]	4.58	0.8221
AT3G51370			Protein phosphatase 2C family ...		Potri.007G061100 [exp]	10.39	0.8178
AT4G21570			Protein of unknown function (D...		Potri.001G405700 [exp]	10.48	0.7867
AT2G20360			NAD(P)-binding Rossmann-fold s...		Potri.014G193300 [exp]	13.41	0.7812
AT1G61065			Protein of unknown function (D...		Potri.004G038700 [exp]	14.14	0.7525
AT5G45110		ATNPR3, NPR3	NPR1-like protein 3 (.1)		Potri.015G116900 [exp]	16.97	0.7608

Compare expression of checked genes

Potri.003G025200 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.