Plant FIBer expression Database

Potri.003G025500 [POPLAR]


External link
JGI Phytozome v13PopgenieAspWood                  
Symbol
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT1G15780 128 / 1e-32 unknown protein
AT1G15770 103 / 1e-25 unknown protein
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Potri.003G028089
[exp]
420 / 6e-141 AT1G15780 223 / 5e-60 unknown protein
Potri.003G012400
[exp]
223 / 2e-65 AT1G15780 557 / 2e-175 unknown protein
Potri.001G204900
[exp]
200 / 2e-57 AT1G15780 575 / 0.0 unknown protein
Potri.003G014000
[exp]
180 / 3e-53 AT1G15780 157 / 2e-41 unknown protein
Potri.016G028200
[exp]
69 / 1e-12 AT1G15780 252 / 4e-69 unknown protein
Potri.006G031200
[exp]
68 / 2e-12 AT1G15780 242 / 1e-65 unknown protein
Potri.003G013000
[exp]
50 / 5e-07 AT1G15780 171 / 5e-48 unknown protein
Potri.001G033400
[exp]
47 / 2e-05 AT1G15780 238 / 3e-66 unknown protein
Potri.003G013300
[exp]
43 / 0.0001 AT1G15780 120 / 5e-31 unknown protein
Flax homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10015323
[exp]
155 / 5e-42 AT1G15780 587 / 0.0 unknown protein
Lus10025450
[exp]
149 / 9e-42 AT1G15780 454 / 8e-149 unknown protein
Lus10025452
[exp]
149 / 1e-39 AT1G15780 248 / 3e-68 unknown protein
Lus10015322
[exp]
49 / 4e-06 AT1G15780 164 / 1e-41 unknown protein
Lus10025451
[exp]
42 / 0.0006 AT1G15780 137 / 6e-35 unknown protein
PFAM info
Representative CDS sequence
>Potri.003G025500.1 pacid=42784497 polypeptide=Potri.003G025500.1.p locus=Potri.003G025500 ID=Potri.003G025500.1.v4.1 annot-version=v4.1
ATGCAGCAACCCCAATCTCAACTTCCTCACTTGCAGTGCCATGAAAATCAACTGATTCCCCTGTTGCAATCAATGAATACGCAAGGTTCTGTACCACAGA
TGCAGCAGAACAATATGTCAAGCTTGCTGCATAATTCCCTTTCAACTTTATCTGGGGATTCGACGTCACAATCAAACATGATGAATCCAATACAACCAGG
CTCCAATTTAGATTCTGGACAAGGAAATGCACTGAGCTCATTGCAGCAGACACGTGTAGGATCTGTACAACAGAATCTCGTGAGCATTTCCCAACCAACC
AAAGTTAACACATTGTCAACACAAAGTGGGGCGAGTATGCTGCAGCCAAATATTCCCCTTCAGTCGAATTCCAATATGATTCAACACCAGCATCTAAAAC
AGCAGCATGAACAACAGATGCTACAAACACAACAGCTTAAACGATTGCAGCAACACCAGAATTTAATGCAGAATCAACAGATGCAGCAGCAGCAATTACA
CCAGCAAGCTCCGTCTCCTATGCCAGGAGATTCTGACAAACCAGTTTCTGGTATTTCCTCACTCTTAAATACTGGAAATATTGTACACCAACCATCTGTT
GCACAAGCACTGGCTCCATCCCTTGCAATTGGCACTCCTGGGATATCTGCATCACCTTTGCTTGCAGAGTTTACCAGTCCTGATGGTGCTCATGGCGGTG
CTTTGACAACTGTTTCTGGCAAGTCAAATGTTACAGAGCAATCACTTGAGTGCTTGATTAAAGCGGTGAAATCTCTGTCTCCCAAAGCACTTGGTGCATC
TGTCGGTGACATTGGCTCCGTTGTCAGTATGATTGACAGAATTGCTGGTTCTGCAGCTGGTAATGGATCTAGAGCTGCAGCTGGTGAGGATTTGGTAGCA
ATGACAGGATGTCATCTTCTTTCGTTTTTGTCTTTTTTATTTTTCACGTGTTTCTCACAAGATGGGAACTCGAGGGAATAA
AA sequence
>Potri.003G025500.1 pacid=42784497 polypeptide=Potri.003G025500.1.p locus=Potri.003G025500 ID=Potri.003G025500.1.v4.1 annot-version=v4.1
MQQPQSQLPHLQCHENQLIPLLQSMNTQGSVPQMQQNNMSSLLHNSLSTLSGDSTSQSNMMNPIQPGSNLDSGQGNALSSLQQTRVGSVQQNLVSISQPT
KVNTLSTQSGASMLQPNIPLQSNSNMIQHQHLKQQHEQQMLQTQQLKRLQQHQNLMQNQQMQQQQLHQQAPSPMPGDSDKPVSGISSLLNTGNIVHQPSV
AQALAPSLAIGTPGISASPLLAEFTSPDGAHGGALTTVSGKSNVTEQSLECLIKAVKSLSPKALGASVGDIGSVVSMIDRIAGSAAGNGSRAAAGEDLVA
MTGCHLLSFLSFLFFTCFSQDGNSRE

DESeq2's median of ratios [POPLAR]

Mapped by: Order by: Show schematic diagram

Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol NWA:WTNWB:WTNWA:OE-ARK2NWB:OE-ARK2NWA:miRNA-ARK2NWB:miRNA-ARK2NW 0hrWT H20WT-NWTUA1dEY NWTUA1dEY+TUB15 NWTUA1dY+TUB9 NWPde NWNWA:WT GANWBWT GATW:WTTW:WT GANWA:OE-ARK2 GANWB:OE-ARK2 GATW:OE-ARK2TW:OE-ARK2 GANWA:miRNA-ARK2 GANWB:miRNA-ARK2 GATW:miRNA-ARK2TW:miRNA-ARK2 GATW 2hrTW 8hrTW 24hrTW 48hrTW 96hrTW 336hrWT ACC35S::etr1-1 H2035S::etr1-1 ACCLMX5::etr1-1 H20LMX5::etr1-1 ACCWT-TWTUA1dEY TWTUA1dEY+TUB15 TWTUA1dY+TUB9 TWPde TWOW:WTOW:WT GAOW:OE-ARK2OW:OE-ARK2 GAOW:miRNA-ARK2OW:miRNA-ARK2 GAOW 2hrOW 8hrOW 24hrOW 48hrOW 96hrOW 336hrRoot CTRRoot LongColdRoot LongDrougtRoot LongHeatRoot LongSaltRoot ShortColdRoot ShortDrougtRoot ShortHeatRoot ShortSaltPtr rootLeaf CTRLeaf LongColdLeaf LongDrougtLeaf LongHeatLeaf LongSaltLeaf ShortColdLeaf ShortDrougtLeaf ShortHeatLeaf ShortSaltPtr leafStem CTRStem LongColdStem LongDrougtStem LongHeatStem LongSaltStem ShortColdStem ShortDrougtStem ShortHeatStem ShortSaltPtr shootPtr xylemPtr phloemPtr fiberPtr vesselPtr fiber vessel ray
AT1G15780 unknown protein Potri.003G025500
[exp]
0 1
AT2G34930 disease resistance family prot... Potri.015G024800
[exp]
2.00 0.7615
AT5G52300 LTI65, RD29B RESPONSIVE TO DESSICATION 29B,... Potri.015G143950
[exp]
18.02 0.7228
AT1G12700 RPF1 RNA processing factor 1, ATP b... Potri.018G038300
[exp]
19.44 0.7217
AT2G29120 ATGLR2.7 GLUTAMATE RECEPTOR 2.7, gluta... Potri.018G013200
[exp]
22.71 0.7090
AT5G44740 POLH Y-family DNA polymerase H (.1.... Potri.003G152600
[exp]
27.65 0.7611
AT2G24940 ATMAPR2 membrane-associated progestero... Potri.006G266200
[exp]
28.30 0.7708
AT2G40540 ATKUP2, ATKT2, ... potassium transporter 2 (.1.2) Potri.012G043501
[exp]
29.56 0.7329
AT1G69480 EXS (ERD1/XPR1/SYG1) family pr... Potri.010G165001
[exp]
30.33 0.7401
AT1G28960 ATNUDX15, ATNUD... ARABIDOPSIS THALIANA NUDIX HYD... Potri.004G053200
[exp]
32.03 0.7578
AT1G51660 ATMKK4, ATMEK4 ARABIDOPSIS THALIANA MITOGEN-A... Potri.013G110450
[exp]
37.30 0.6829

Potri.003G025500 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.