Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G53440 752 / 0 Leucine-rich repeat transmembrane protein kinase (.1) AT1G53430 747 / 0 Leucine-rich repeat transmembrane protein kinase (.1.2) AT3G14840 519 / 8e-172 Leucine-rich repeat transmembrane protein kinase (.1.2) AT1G07650 500 / 1e-164 Leucine-rich repeat transmembrane protein kinase (.1.2) AT1G29750 465 / 3e-151 RKF1 receptor-like kinase in flowers 1 (.1.2) AT1G53420 464 / 3e-151 Leucine-rich repeat transmembrane protein kinase (.1) AT1G56145 434 / 2e-139 Leucine-rich repeat transmembrane protein kinase (.1.2) AT1G56130 415 / 7e-132 Leucine-rich repeat transmembrane protein kinase (.1) AT1G29730 412 / 3e-131 Leucine-rich repeat transmembrane protein kinase (.1) AT1G29740 407 / 2e-128 Leucine-rich repeat transmembrane protein kinase (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G385400 [exp] 1367 / 0 AT1G53440 1231 / 0.0 Leucine-rich repeat transmembrane protein kinase (.1) Potri.001G385600 [exp] 1183 / 0 AT1G53440 1202 / 0.0 Leucine-rich repeat transmembrane protein kinase (.1) Potri.003G026325 [exp] 1176 / 0 AT1G53440 1195 / 0.0 Leucine-rich repeat transmembrane protein kinase (.1) Potri.011G106400 [exp] 1113 / 0 AT1G53440 1268 / 0.0 Leucine-rich repeat transmembrane protein kinase (.1) Potri.001G385300 [exp] 894 / 0 AT1G53440 1134 / 0.0 Leucine-rich repeat transmembrane protein kinase (.1) Potri.001G386300 [exp] 885 / 0 AT1G53440 1120 / 0.0 Leucine-rich repeat transmembrane protein kinase (.1) Potri.003G025800 [exp] 847 / 0 AT1G53440 1010 / 0.0 Leucine-rich repeat transmembrane protein kinase (.1) Potri.001G385900 [exp] 637 / 0 AT1G53440 889 / 0.0 Leucine-rich repeat transmembrane protein kinase (.1) Potri.001G385200 [exp] 580 / 0 AT3G14840 1171 / 0.0 Leucine-rich repeat transmembrane protein kinase (.1.2)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10005550 [exp] 805 / 0 AT1G53440 1223 / 0.0 Leucine-rich repeat transmembrane protein kinase (.1) Lus10038153 [exp] 707 / 0 AT1G53440 1046 / 0.0 Leucine-rich repeat transmembrane protein kinase (.1) Lus10041937 [exp] 702 / 0 AT1G53440 1138 / 0.0 Leucine-rich repeat transmembrane protein kinase (.1) Lus10042505 [exp] 696 / 0 AT1G53440 1013 / 0.0 Leucine-rich repeat transmembrane protein kinase (.1) Lus10015239 [exp] 488 / 3e-160 AT1G29750 1189 / 0.0 receptor-like kinase in flowers 1 (.1.2) Lus10010951 [exp] 484 / 1e-159 AT1G07650 979 / 0.0 Leucine-rich repeat transmembrane protein kinase (.1.2) Lus10031374 [exp] 488 / 9e-159 AT1G07650 1221 / 0.0 Leucine-rich repeat transmembrane protein kinase (.1.2) Lus10031199 [exp] 384 / 2e-120 AT1G56130 1261 / 0.0 Leucine-rich repeat transmembrane protein kinase (.1) Lus10005418 [exp] 258 / 4e-75 AT1G29750 800 / 0.0 receptor-like kinase in flowers 1 (.1.2) Lus10020935 [exp] 155 / 9e-39 AT4G08850 1011 / 0.0 Leucine-rich repeat receptor-like protein kinase family protein (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0202 [poplar] [flax] GBD PF11721 [poplar] [flax] Malectin Malectin domain CL0022 [poplar] [flax] LRR PF13855 [poplar] [flax] LRR_8 Leucine rich repeat
Representative CDS sequence Show only first row Show all	>Potri.003G025566.1 pacid=42785103 polypeptide=Potri.003G025566.1.p locus=Potri.003G025566 ID=Potri.003G025566.1.v4.1 annot-version=v4.1 ATGGCGTTTGTTCAATCACTGTCAAAGACTGTCTCTGTTTTTGTTTTCGGTTTTGTGGTATTGAATTGCTTGGTTGTGGACAAATTTAGATCTCATGCCC AAGGAGTGACTCCACTCTTGCCACAAGATGAAGTGCAAATCCTTCAAACAATATCCGACAAGCTGAAAAACAACAATTGGACGACAATCGATCGAACTTC CTGCAGTAGCGCACAGTGGAAGCTGTACATCAGCGACCCCCCCAAAAATGACAGAATTCAAAGCAACGTTACATGTGACTGTACATTTGAAAATAACACC GTCTGTCATGTCATCAGCTTCAAGCTGAAGGGTTTTAATCTGACTGGAGTTCTACCAGTGGAATTTCGAAATCTTACCCAACTGCGCGAAATTGATCTCT CTCGCAACTACTTAAATGGATCAATCCCAGGAAGTCTAGCTGAGCTCCCAAACCTTCAGAGTTTGTCTCTTCTGGCAAACCGTCTCTCCGGTTCAATTCC TAGGGAAATTGGCAGCTTTGCGACTCTGAAGTCCCTGGTCCTGGAAGATAATCTACTAGGAGGGTCTCTTCATCCAGACCTTGGAAATTTGAAAAGCTTG GAGAGACTTCTTCTTTCCGCCAACAATTTTTCAGGAACAATACCAGACACATTTGGCAATTTAAAGAATTTAAATGATTTTAGGATAGATGGAAGTGAAC TGTCAGGGAAGATACCTGACTTTATTGGGAACTGGACCAACATTACGACATTTGATTTGCAAGGAACATCCATGGAGGGTCCTATTCCCTCTACCATTTC ACTGTTAAAAAACTTAACAACTTTGAGAATATCTGATTTGAAAGGATCCAGTTCAACTTTCCCTGATCTGAAAGATATGACAAAAATGGAAAAACTGATT CTGAGAAATTGCTCAATGACTGGTTCAATCGAAGAATACCTTGGAAATATGGCAGACCTAGATACTCTAGATCTGAGCTTTAACAAGTTGACAGGCCCGA TTCCTGGCCCATTAGAGAGTTTGACAAAAAATATAAAGTTCATGTTTCTGAATAACAACTTACTAACTGGAGAAGTGCCTGCTTGGATACTGGGAAGCAG GAAAGACTTGGATTTATCTTACAACAATTTTACTGGGTCAGCTCAGCCAAGTTGTCAACAGCTACCAGTGAACTTAGTTTCTAGTCATGTGTCAACTGGG AGTAACAAGATTTCTTGGTGCTTGAACAAGGACCTTGTTTGCACAAGAAAACCTCAACACCATTCCTTGTTCATAAACTGTGGAGGGAGCAGTGAGACTG TTGGTGATAATGAATATGAAGACGACACAACTCCAGGGGGGGCAGCTGATTTTGCATCTATATCAGAAAGATGGGGTTATAGCAGTACAGGGACTTATAT TGGCACTGATGACGGCGCTTACAAAGCAACAAATTCTTATGGTCTGAATGTGACCGGTGAAGGTTTTTACCAAACTGCTCGCCTTGCCCCTCAATCACTC AAGTACTATGGCCTGTGCATGCTGGCGGGCAGTTACAAAGTGCAGCTCCACTTTGCTGAAATTATGTATTCCAATAATCAGACTTTTAGCAGCCTTGGGA GGCGGATATTTGATATATCAATTCAAGGGAAGGTAGTTGAGGCAAATTTCAATATTATGGAGGAAGCTGGAGGTGTTGGTATTGGCATCACTAAGGTATT TGATGGTATAATTGTTAATGGTACCACACTGGAGATACACTTATACTGGTCAGGCAAAGGTACTACTGCTGTTCCTGACAGGGGTGTCTATGGACCTCTC ATATCTGCCATTACAGTGACTCCAAACTTTAAGGTGGATAATGGTGGCGGATTATCAGTTGGAGCTATTATTGGCATTGTAGCTGCTCCATGTGTGCTTG CGGCATTGGTTTTGCTGGTCCTCCGGAAGAAAGGTTACTTGGGAGGGAAGGACCTTGAAGATAAAGAACTCCGTGCTCTAGATCTCCAAACTGGTTATTT CAGCCTAAGGCAAATTAAACATGCGACCAATAATTTTGACCTTGCAAATAAGATAGGAGAAGGAGGATTTGGTCCAGTTTACAAGGGCATGTTGTCAGAT GGTTCTGTAATTGCTGTATAG
AA sequence Show only first row Show all	>Potri.003G025566.1 pacid=42785103 polypeptide=Potri.003G025566.1.p locus=Potri.003G025566 ID=Potri.003G025566.1.v4.1 annot-version=v4.1 MAFVQSLSKTVSVFVFGFVVLNCLVVDKFRSHAQGVTPLLPQDEVQILQTISDKLKNNNWTTIDRTSCSSAQWKLYISDPPKNDRIQSNVTCDCTFENNT VCHVISFKLKGFNLTGVLPVEFRNLTQLREIDLSRNYLNGSIPGSLAELPNLQSLSLLANRLSGSIPREIGSFATLKSLVLEDNLLGGSLHPDLGNLKSL ERLLLSANNFSGTIPDTFGNLKNLNDFRIDGSELSGKIPDFIGNWTNITTFDLQGTSMEGPIPSTISLLKNLTTLRISDLKGSSSTFPDLKDMTKMEKLI LRNCSMTGSIEEYLGNMADLDTLDLSFNKLTGPIPGPLESLTKNIKFMFLNNNLLTGEVPAWILGSRKDLDLSYNNFTGSAQPSCQQLPVNLVSSHVSTG SNKISWCLNKDLVCTRKPQHHSLFINCGGSSETVGDNEYEDDTTPGGAADFASISERWGYSSTGTYIGTDDGAYKATNSYGLNVTGEGFYQTARLAPQSL KYYGLCMLAGSYKVQLHFAEIMYSNNQTFSSLGRRIFDISIQGKVVEANFNIMEEAGGVGIGITKVFDGIIVNGTTLEIHLYWSGKGTTAVPDRGVYGPL ISAITVTPNFKVDNGGGLSVGAIIGIVAAPCVLAALVLLVLRKKGYLGGKDLEDKELRALDLQTGYFSLRQIKHATNNFDLANKIGEGGFGPVYKGMLSD GSVIAV

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT1G53440			Leucine-rich repeat transmembr...		Potri.003G025566 [exp]	0	1
AT1G53440			Leucine-rich repeat transmembr...		Potri.001G385400 [exp]	1.00	0.9772
AT5G66850		MAPKKK5	mitogen-activated protein kina...		Potri.002G129100 [exp]	2.00	0.9251
AT1G53440			Leucine-rich repeat transmembr...		Potri.001G385900 [exp]	3.16	0.9230
AT2G38470	WRKY	ATWRKY33, WRKY3...	WRKY DNA-binding protein 33 (....		Potri.006G105300 [exp]	3.87	0.9321
AT5G13180	NAC	VNDIP2, ANAC083...	VND-interacting 2, NAC domain ...		Potri.017G063300 [exp]	4.24	0.8707
AT3G01400			ARM repeat superfamily protein...		Potri.014G016400 [exp]	4.58	0.8597
AT2G15730			P-loop containing nucleoside t...		Potri.014G034300 [exp]	4.89	0.9226
AT5G41810			unknown protein		Potri.001G093500 [exp]	5.47	0.8871
AT1G53440			Leucine-rich repeat transmembr...		Potri.003G025800 [exp]	5.65	0.9030
AT2G17220		Kin3	kinase 3, Protein kinase super...		Potri.004G206100 [exp]	7.00	0.9078

Compare expression of checked genes

Potri.003G025566 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.