Plant FIBer expression Database

Potri.003G025702 [POPLAR]


External link
JGI Phytozome v13PopgenieAspWood                  
Symbol
Arabidopsis homologues

No hit found

Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Flax homologues

No hit found
PFAM info
Representative CDS sequence
>Potri.003G025702.1 pacid=42784709 polypeptide=Potri.003G025702.1.p locus=Potri.003G025702 ID=Potri.003G025702.1.v4.1 annot-version=v4.1
ATGCAGCCGTGCGTGGGGAGGAGCTGTTGTGGGGCCGGCTTTGCTGCGGGAGGCAGAAGACGGGCAGATCTGTGGTGTTGGCCAGATGAGGGAGACCGTA
GGTCTGAGGAGACGGTAGGGACAGCTCTGTGGTATGCTGCTGGTTGGTTGAAGGAGATGAAGCAGAGAGCGGGGTTGCTGTTGTGTTCGGTCGTTCGGGG
AAGAAAGGTTACTGTTGGGTCTGTCGGGTTAAATTTGGAGGAATGGCTGTTGAGAGGGAAGGGAACCAAGAATCCCGAAGGAGGGGGGCCGGCGGCGCTG
GCTGGTTCTGGTGAGTTTTTTTTTTGTCAAGGTAGAGAAGGAAAGGAAATGGCGTTGGGCAGGGGAGAATGTGGGGCTCCTGGTGATGAGCTGAAGATTT
GTGTTGATGAGGAGGGTGAGTGA
AA sequence
>Potri.003G025702.1 pacid=42784709 polypeptide=Potri.003G025702.1.p locus=Potri.003G025702 ID=Potri.003G025702.1.v4.1 annot-version=v4.1
MQPCVGRSCCGAGFAAGGRRRADLWCWPDEGDRRSEETVGTALWYAAGWLKEMKQRAGLLLCSVVRGRKVTVGSVGLNLEEWLLRGKGTKNPEGGGPAAL
AGSGEFFFCQGREGKEMALGRGECGAPGDELKICVDEEGE

DESeq2's median of ratios [POPLAR]

Mapped by: Order by: Show schematic diagram

Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol NWA:WTNWB:WTNWA:OE-ARK2NWB:OE-ARK2NWA:miRNA-ARK2NWB:miRNA-ARK2NW 0hrWT H20WT-NWTUA1dEY NWTUA1dEY+TUB15 NWTUA1dY+TUB9 NWPde NWNWA:WT GANWBWT GATW:WTTW:WT GANWA:OE-ARK2 GANWB:OE-ARK2 GATW:OE-ARK2TW:OE-ARK2 GANWA:miRNA-ARK2 GANWB:miRNA-ARK2 GATW:miRNA-ARK2TW:miRNA-ARK2 GATW 2hrTW 8hrTW 24hrTW 48hrTW 96hrTW 336hrWT ACC35S::etr1-1 H2035S::etr1-1 ACCLMX5::etr1-1 H20LMX5::etr1-1 ACCWT-TWTUA1dEY TWTUA1dEY+TUB15 TWTUA1dY+TUB9 TWPde TWOW:WTOW:WT GAOW:OE-ARK2OW:OE-ARK2 GAOW:miRNA-ARK2OW:miRNA-ARK2 GAOW 2hrOW 8hrOW 24hrOW 48hrOW 96hrOW 336hrRoot CTRRoot LongColdRoot LongDrougtRoot LongHeatRoot LongSaltRoot ShortColdRoot ShortDrougtRoot ShortHeatRoot ShortSaltPtr rootLeaf CTRLeaf LongColdLeaf LongDrougtLeaf LongHeatLeaf LongSaltLeaf ShortColdLeaf ShortDrougtLeaf ShortHeatLeaf ShortSaltPtr leafStem CTRStem LongColdStem LongDrougtStem LongHeatStem LongSaltStem ShortColdStem ShortDrougtStem ShortHeatStem ShortSaltPtr shootPtr xylemPtr phloemPtr fiberPtr vesselPtr fiber vessel ray
Potri.003G025702
[exp]
0 1
Potri.002G234850
[exp]
28.98 0.5606
AT2G40290 Eukaryotic translation initiat... Potri.010G184900
[exp]
32.17 0.6486
Potri.013G094950
[exp]
37.04 0.5912
AT4G39490 CYP96A10 "cytochrome P450, family 96, s... Potri.001G397900
[exp]
49.83 0.5738
AT5G13890 Family of unknown function (DU... Potri.002G237200
[exp]
76.92 0.5708
AT5G14040 PHT3;1 phosphate transporter 3;1 (.1) Potri.017G060800
[exp]
78.70 0.5868
AT4G23650 CDPK6, CPK3 Calcium dependent protein kina... Potri.003G134000
[exp]
86.58 0.5373
AT1G79650 AtAO1, RAD23B, ... RADIATION SENSITIVE23B, Arabid... Potri.001G038000
[exp]
97.57 0.5871 RAD23.1
AT1G16610 RNPS1, SR45 arginine/serine-rich 45 (.1.2.... Potri.011G143100
[exp]
98.99 0.5762 SR45.1
AT1G04990 C3HZnF Zinc finger C-x8-C-x5-C-x3-H t... Potri.002G223700
[exp]
120.12 0.5435 ZFN2.2

Potri.003G025702 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.