Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	No hit found
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G006850 [exp] 412 / 3e-143 AT2G15180 54 / 1e-07 Zinc knuckle (CCHC-type) family protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10025364 [exp] 40 / 0.0006 ND /
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0511 [poplar] [flax] Retroviral_zf PF00098 [poplar] [flax] zf-CCHC Zinc knuckle CL0523 [poplar] [flax] GAG-polyprotein PF03732 [poplar] [flax] Retrotrans_gag Retrotransposon gag protein
Representative CDS sequence Show only first row Show all	>Potri.003G026106.1 pacid=42786645 polypeptide=Potri.003G026106.1.p locus=Potri.003G026106 ID=Potri.003G026106.1.v4.1 annot-version=v4.1 ATGAAGGCCGACATCCCTTATTTTAATGGTCATCTATCCATTGAAGCATTTTTAGATTGGCTTGTGGAGGTAGAGAGATTTTTTGAGATTATGTCAGTAC CAGAAGAGAGGATGACGAAGATAGCAGCTTTTCGCTTAAAAGGGAGTGCAGCTGTATGGTGGGATAATTTGCAGAAGATGAAACAATTGATGATGGACCG TTTCCTTCCAGTAGATTATGAGCAGCATCTTTATCGCCTTTACCATAATTGTACCCAGGGAAGCAGGACAATAAAGGATTATACTGATGAGTTCTTACGG TTGGTAGAGAGAAATTCGTTGAATGAGACTCAGGGGCAGACGGTATCAAGATATGTCAATGGATTGACGACATCAATACAGGATAGAATAGGGTTACAAG TTTTCTGGGACATCCATGAGGCTCAAAATATGGCTATGAAGGCACAACAGTTAGAGAAAGAATTGAAGGAACGTGAACAGAACGAGAAAAAAATGAATTA TGGCAACAACAATAATTACCCGAGGAAGACAGCAGATTCATATGTTCCTAACAAGGAGAAGAAAGAGGTCCAGCCGATCCAAAGAAATAATTATAAAGGG CAGAATTACAGAGGAGAGAGCAGCCAGAACAATGACATAAATCAGAATCGAAATCAGAGACCAAACCATGGCCCATACGCTAGAGCAACTGGTGATGTCT GCTATAGGTGTTTCCAGCCTGGCCACCGATCAAATAACTGTCCAAAGCGGAAGCAAGCGAACCTTGTAGAAGGAACCGAAGAAGCTGATGATCATAGTGG AAATTATGATGATGATTATGATGGGGCTGAGTTTGCATATGAAGATAATAACGAGGTTGTTAATTTGATGATGAATCGTACTGCTATTGAAGAAGATGAA GTGCTCAGCATGGTGCTACAACGAGCTCTCCTTTCACCTAAACAAGAAGGACAGAGGAATCACATATTTCGTTCCTTATGTTCTGTTGACAACAAGGTGT GCACATTGATTGTAGATGGAGGCAGCTGTGAGAATTTTGTGTCAAAAAAGCTGGTTGATTATTTAAAACTTCCAACAGAAATGCATAAGAATCCTTATAT GTTAGGGTGGGTGAACTATCTCCAAGAATAG
AA sequence Show only first row Show all	>Potri.003G026106.1 pacid=42786645 polypeptide=Potri.003G026106.1.p locus=Potri.003G026106 ID=Potri.003G026106.1.v4.1 annot-version=v4.1 MKADIPYFNGHLSIEAFLDWLVEVERFFEIMSVPEERMTKIAAFRLKGSAAVWWDNLQKMKQLMMDRFLPVDYEQHLYRLYHNCTQGSRTIKDYTDEFLR LVERNSLNETQGQTVSRYVNGLTTSIQDRIGLQVFWDIHEAQNMAMKAQQLEKELKEREQNEKKMNYGNNNNYPRKTADSYVPNKEKKEVQPIQRNNYKG QNYRGESSQNNDINQNRNQRPNHGPYARATGDVCYRCFQPGHRSNNCPKRKQANLVEGTEEADDHSGNYDDDYDGAEFAYEDNNEVVNLMMNRTAIEEDE VLSMVLQRALLSPKQEGQRNHIFRSLCSVDNKVCTLIVDGGSCENFVSKKLVDYLKLPTEMHKNPYMLGWVNYLQE

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
					Potri.003G026106 [exp]	0	1
					Potri.002G239451 [exp]	1.00	0.9155
					Potri.005G144750 [exp]	2.00	0.8863
AT5G36930			Disease resistance protein (TI...		Potri.006G284100 [exp]	2.00	0.8311
AT1G22110			structural constituent of ribo...		Potri.002G092000 [exp]	8.77	0.8135
AT1G02460			Pectin lyase-like superfamily ...		Potri.002G190600 [exp]	10.48	0.8168
					Potri.010G019550 [exp]	14.00	0.7949
					Potri.001G282604 [exp]	14.49	0.8138
AT3G55550			Concanavalin A-like lectin pro...		Potri.010G200600 [exp]	15.49	0.7621
					Potri.019G029850 [exp]	17.97	0.7790
AT3G01490			Protein kinase superfamily pro...		Potri.017G072900 [exp]	18.38	0.7691

Compare expression of checked genes

Potri.003G026106 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.