Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G74190 424 / 5e-131 AtRLP15 receptor like protein 15 (.1) AT1G07390 422 / 8e-130 AtRLP1 receptor like protein 1 (.1.2.3) AT2G25470 409 / 5e-126 AtRLP21 receptor like protein 21 (.1) AT1G74170 410 / 1e-125 AtRLP13 receptor like protein 13 (.1) AT1G58190 400 / 1e-121 AtRLP9 receptor like protein 9 (.1.2) AT3G53240 389 / 1e-118 AtRLP45 receptor like protein 45 (.1) AT5G49290 389 / 1e-118 ATRLP56 receptor like protein 56 (.1) AT1G74180 380 / 1e-114 AtRLP14 receptor like protein 14 (.1) AT1G54470 291 / 5e-83 RPP27 resistance to Peronospora parasitica 27, RNI-like superfamily protein (.1.2) AT5G46330 240 / 5e-65 FLS2 FLAGELLIN-SENSITIVE 2, Leucine-rich receptor-like protein kinase family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.003G026914 [exp] 1730 / 0 AT1G07390 444 / 1e-137 receptor like protein 1 (.1.2.3) Potri.003G028557 [exp] 1585 / 0 AT1G07390 388 / 1e-117 receptor like protein 1 (.1.2.3) Potri.003G013700 [exp] 1552 / 0 AT2G25470 366 / 2e-110 receptor like protein 21 (.1) Potri.005G009300 [exp] 1506 / 0 AT1G07390 449 / 9e-140 receptor like protein 1 (.1.2.3) Potri.003G013200 [exp] 1314 / 0 AT2G25470 453 / 6e-144 receptor like protein 21 (.1) Potri.005G006701 [exp] 1266 / 0 AT1G74190 438 / 3e-136 receptor like protein 15 (.1) Potri.005G013800 [exp] 1209 / 0 AT1G74190 432 / 2e-135 receptor like protein 15 (.1) Potri.003G013156 [exp] 1105 / 0 AT1G07390 379 / 1e-117 receptor like protein 1 (.1.2.3) Potri.005G013200 [exp] 1064 / 0 AT1G58190 453 / 1e-142 receptor like protein 9 (.1.2)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10030068 [exp] 486 / 3e-155 AT5G49290 397 / 3e-124 receptor like protein 56 (.1) Lus10042381 [exp] 306 / 7e-88 AT1G74190 289 / 1e-82 receptor like protein 15 (.1) Lus10027856 [exp] 288 / 5e-82 AT1G74190 272 / 1e-77 receptor like protein 15 (.1) Lus10026415 [exp] 258 / 8e-71 AT1G47890 424 / 3e-131 receptor like protein 7 (.1) Lus10016384 [exp] 251 / 1e-68 AT2G34930 464 / 5e-148 disease resistance family protein / LRR family protein (.1) Lus10011039 [exp] 250 / 1e-67 AT3G11010 367 / 5e-110 receptor like protein 34 (.1) Lus10006948 [exp] 244 / 1e-67 AT2G34930 637 / 0.0 disease resistance family protein / LRR family protein (.1) Lus10003389 [exp] 244 / 2e-66 AT1G45616 432 / 7e-135 receptor like protein 6 (.1) Lus10024721 [exp] 240 / 8e-66 AT3G23110 369 / 1e-114 EMBRYO DEFECTIVE 2800, receptor like protein 37 (.1) Lus10002753 [exp] 239 / 5e-65 AT2G34930 389 / 2e-120 disease resistance family protein / LRR family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0022 [poplar] [flax] LRR PF00560 [poplar] [flax] LRR_1 Leucine Rich Repeat CL0022 [poplar] [flax] PF08263 [poplar] [flax] LRRNT_2 Leucine rich repeat N-terminal domain CL0022 [poplar] [flax] LRR PF13855 [poplar] [flax] LRR_8 Leucine rich repeat
Representative CDS sequence Show only first row Show all	>Potri.003G026308.1 pacid=42787277 polypeptide=Potri.003G026308.1.p locus=Potri.003G026308 ID=Potri.003G026308.1.v4.1 annot-version=v4.1 ATGATGATGAAAAGAATGGGGGCTTGGATGTTGCTAGCATTATTGACTTTGGTTGGCGAATGGTATGGTCGTTGTTATGGGTGTTTGGAGGAAGAGAGGA TTGGTCTCTTGGAGATCCAATCTTTGATCGACCCATATGGATTTTACTTGAGAGATTGGATGGACAGTAGTAATTGTTGTGAGTGGCGTAGGATCGAGTG TGATAACACTACAAGGCGAGTGATCCAACTCTCTCTTAGAGGTAGAAGGGATTGGGGGTTAGGCGATTGGGTTCTCAACGCATCTTTGTTTCAGCCTTTC AAAGAATTGCAAAGTCTTGAATTGGGAAAAAATGGAATTGTTGGTTGCTTGGAGAATGAAGGCTTCGAAGTCCTATCATCAAAACTGAGGAATCTTGACC TAAGTCAAAACCGATTTAATAATGATAAAAGCATTTTGTCATGTTTCAATGGGCTTTCCACTCTCAAGTCTTTAGATCTATCAGACAATGAGTTGAGAGG ATCAGGTAGCTTCTGTGGTTTCAAAGTCTTGTCATCAAGGTTGAAAAAGATGGAAAACCTTCATCTAAGTGGGAATCAATGCAACGATAGCATTTTTTCT TCTCTAACTGGATTCTCATCTCTCAAGTTCTTAGATCTAGCATATAATCAGTTGACAGGATCTGCTAGTATCAATAGTTTTCAACTCCAACCGATGAGGC TGGGAAAGTTAGAGAACCTTGACCTGAGTGGCAATCAATTGAACAGCAGCATCTTATCAATTCTTAGTGGGCTTTCATCCCTCAAGTCTTTGGATCTATC AGATAATATGTTGACAGGATCAGGTTTTGAGATCATATCATCACATTTGGGGAAACTCGAGAACCTGGACCTGAGCTATAATATATTCAACGACAGCATT TTATCACATCTGCATGGACTTTCTTCTCTCAAGTCTTTAAATTTATCAGGCAACATGTTGCTAGGATCGACGACTATCAATGGTTTAAGGAAGCTGGAAT TCCTGCAGTCATTGCCATCCCTGAAGACCCTTTCTCTCAAGGATACTAATTTAAGTCAAGGGACTTTCTTCTATTCAAGCACCCTTGAAGAATTGTATCT AGATAATACTTCTCTCCCAATAAACTTTCTCCAGAACATTGGAGCATTGCATGCTCTTAAAGTTTTGTCTGTTGCTGGATGTGACCTCCATGGCACCCTA CCCGTTCAAGGTTGGTGTGAATTGAAGAATCTAAAGCAGTTAGATCTCTCTGGAAATAATTTTGGAGGTTCACTCCCAGATTGTTTGGGAAACTTGTCCT CTCTACAACTATTAGATGTTTCTGAAAACCAGTTTATTGGAAATATTGCCTCCGGTCCTTTTACCAATCTCATATCCCTTGAATTCCTCTCATTATCAAA TAATCTCTTTGAAGTTCCCACTTCAATGAAGCCTTTCATGAACCACTCAAGCCTCAAGTTTTTCTCCAGTGAGAACAACAAACTAGTAACAGAACCTGCT GCCTTTGATAATTTGATTCCAAAGTTCCAACTAGTCTTTTTTCGATTGTCAAAAACAACGAAAGCACTCAATGTAGAAATTCCCGACTTCCTCTATTACC AATACGACTTAAGAGTCCTTGATCTCTCCCACAACAACATCACCGGAATGTTTCCATCGTGGTTGTTGAAGAACAATACACGATTGGAGGAACTATGGCT GAGCGAGAACTCCTTTGTTGGTGCTTTGCAGTTGCAAGATCACCCATATTCGAATATGATCGAATTAGATATATCCAACAACAACATGAATGGTCAAATT CCAAAAGATATTTGTTTGATCTTTCCAAATCTATGGAGCTTAAAGATGGCTAAGAATGGATTCACAGGTGGTATTCCTTCTTGTTTAGGAAATATTAGCT CTTTTTCAGTTTTAGATTTGTCCAACAATCAATTGTCTATAGTAAAACTAGAACAACTAACAGCTATAATGTTTCTCAACCTATCAAACAACAATTTGGG TGGGCAAATACCAACCTCGGTGTTCAATTCTTCTAGCCTTGATGTTCTCTTCCTAAGTGGTAACAACTTTTGGGGTCAGATATCAGATTTTCCGTTAAAT GGGTGGAAAGAGTGGGTTGTATTGGATTTGAGTAACAATCAATTTTCAGGTAAGGTTCCAAGATGGTTCGTCAATTCTACATTCCTTAGGTCAATTGATT TGTCCAAAAACCATTTTAAAGGTCCGATCCCAGGAGACTTTTGTAAGCTTGACCAGCTTTTATATTTGGACCTTTCTAAGAACAACTTGTCTGGATATAT ACCATCTTGTTTCAGTCCACGGACTCTAATCCATGTGCATCTATCCGAAAATAGATTGAGCGGTCCATTAACACATGGATTTTATAACAGCTCTTCCCTG GTTACGATGGATCTTCGAGACAACAGCTTCACCGGCTCCATTCCAAATTGGATTGGCAATCTTTCATCATTGAGTGTTCTTCTTCTAAAGGCTAATCACT TTGATGGTGAGCTCCCTGTTCAGTTATGCTTATTAGAAAAATTAAACATTTTGGATGTTTCACAAAACCAGCTCTTTGGTCCACTACCCTCTTGTTTGGG CAATCTTACTTTCAAGGAAAGTTCCCAGAAAGCGTTCGTGTATCTCAGATATGTTTTTCTAACCAAGTCCATAAAAGAAGCTTATTATGAAACAATGGGT CCACCATTAGTGGATAGTATGTACAACTTGGAAAAAGGTTTTCAGCTTAACTTTACAGAAGTGATAGAATTTACAACTAAAAATATGTATTATAGTTACA TGGGGAAAATTCTTAACTATATGTATGGTATTGATCTCTCCAATAACAACTTCGTAGGAGCAATCCCACCAGAATTTGGAAACTTAAGTGCGATACTGTC ATTAAACTTATCACACAACAATCTCACTGGATCTATCCCTGCAACATTCTCAAACCTAAAGCATATTGAGAGTTTGGATCTTTCTTACAACAACTTGAAT GGTGCCATCCCTCCACAACTTACTGAAATTACCACACTGGAAGTTTTTAGTGTGGCGCACAATAACTTGTCAGGTAAGACGCCTGAGAGAAAATATCAGT TTGGGACCTTTGATGCAAGCTGTTACAAAGGAAATCCTTTCTTGTGTGGAACTCCATTGCAAAACAATTGTAGTGAGGAAGCAGTGCCGTTGCAGCCAGT GCATAATGATGAACAAGGAGATGATGGTTTCATAGACATGGAGTTTTTCTACATCAGTTTCGGTGTATGTTACACGGTTGTGGTGATGACGATTGCAACT GTTCTCTACATCAATCCATATTGGCGACGCAGGTGGTTGTACTTCATCGAAGACTGCATAGATACTTGCTACTATTTTGTGGTGGCTAGTTTTCACAAGT TCTCCAACTTCAGAAGGTGA
AA sequence Show only first row Show all	>Potri.003G026308.1 pacid=42787277 polypeptide=Potri.003G026308.1.p locus=Potri.003G026308 ID=Potri.003G026308.1.v4.1 annot-version=v4.1 MMMKRMGAWMLLALLTLVGEWYGRCYGCLEEERIGLLEIQSLIDPYGFYLRDWMDSSNCCEWRRIECDNTTRRVIQLSLRGRRDWGLGDWVLNASLFQPF KELQSLELGKNGIVGCLENEGFEVLSSKLRNLDLSQNRFNNDKSILSCFNGLSTLKSLDLSDNELRGSGSFCGFKVLSSRLKKMENLHLSGNQCNDSIFS SLTGFSSLKFLDLAYNQLTGSASINSFQLQPMRLGKLENLDLSGNQLNSSILSILSGLSSLKSLDLSDNMLTGSGFEIISSHLGKLENLDLSYNIFNDSI LSHLHGLSSLKSLNLSGNMLLGSTTINGLRKLEFLQSLPSLKTLSLKDTNLSQGTFFYSSTLEELYLDNTSLPINFLQNIGALHALKVLSVAGCDLHGTL PVQGWCELKNLKQLDLSGNNFGGSLPDCLGNLSSLQLLDVSENQFIGNIASGPFTNLISLEFLSLSNNLFEVPTSMKPFMNHSSLKFFSSENNKLVTEPA AFDNLIPKFQLVFFRLSKTTKALNVEIPDFLYYQYDLRVLDLSHNNITGMFPSWLLKNNTRLEELWLSENSFVGALQLQDHPYSNMIELDISNNNMNGQI PKDICLIFPNLWSLKMAKNGFTGGIPSCLGNISSFSVLDLSNNQLSIVKLEQLTAIMFLNLSNNNLGGQIPTSVFNSSSLDVLFLSGNNFWGQISDFPLN GWKEWVVLDLSNNQFSGKVPRWFVNSTFLRSIDLSKNHFKGPIPGDFCKLDQLLYLDLSKNNLSGYIPSCFSPRTLIHVHLSENRLSGPLTHGFYNSSSL VTMDLRDNSFTGSIPNWIGNLSSLSVLLLKANHFDGELPVQLCLLEKLNILDVSQNQLFGPLPSCLGNLTFKESSQKAFVYLRYVFLTKSIKEAYYETMG PPLVDSMYNLEKGFQLNFTEVIEFTTKNMYYSYMGKILNYMYGIDLSNNNFVGAIPPEFGNLSAILSLNLSHNNLTGSIPATFSNLKHIESLDLSYNNLN GAIPPQLTEITTLEVFSVAHNNLSGKTPERKYQFGTFDASCYKGNPFLCGTPLQNNCSEEAVPLQPVHNDEQGDDGFIDMEFFYISFGVCYTVVVMTIAT VLYINPYWRRRWLYFIEDCIDTCYYFVVASFHKFSNFRR

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT1G74190		AtRLP15	receptor like protein 15 (.1)		Potri.003G026308 [exp]	0	1
AT4G23180		RLK4, CRK10	cysteine-rich RLK (RECEPTOR-li...		Potri.004G024140 [exp]	4.24	0.9438
AT1G74180		AtRLP14	receptor like protein 14 (.1)		Potri.001G064600 [exp]	6.70	0.9345
AT4G16380			Heavy metal transport/detoxifi...		Potri.006G020000 [exp]	7.41	0.9325
AT4G23180		RLK4, CRK10	cysteine-rich RLK (RECEPTOR-li...		Potri.004G024052 [exp]	7.74	0.9405
AT4G23180		RLK4, CRK10	cysteine-rich RLK (RECEPTOR-li...		Potri.004G024228 [exp]	8.24	0.9414
					Potri.010G008009 [exp]	8.36	0.9282
AT4G23180		RLK4, CRK10	cysteine-rich RLK (RECEPTOR-li...		Potri.004G024000 [exp]	9.16	0.9383
AT2G25470		AtRLP21	receptor like protein 21 (.1)		Potri.018G144300 [exp]	11.31	0.9354
AT4G23180		RLK4, CRK10	cysteine-rich RLK (RECEPTOR-li...		Potri.004G023788 [exp]	12.68	0.9355
AT2G25470		AtRLP21	receptor like protein 21 (.1)		Potri.003G013200 [exp]	12.96	0.9316

Compare expression of checked genes

Potri.003G026308 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.