Plant FIBer expression Database

Potri.003G026500 [POPLAR]


External link
JGI Phytozome v13PopgenieAspWood                  
Symbol
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT3G14830 593 / 0 unknown protein
AT1G53450 562 / 0 unknown protein
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Potri.001G386700
[exp]
861 / 0 AT3G14830 586 / 0.0 unknown protein
Potri.011G106600
[exp]
810 / 0 AT3G14830 598 / 0.0 unknown protein
Flax homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10041938
[exp]
607 / 0 AT3G14830 523 / 0.0 unknown protein
Lus10005552
[exp]
580 / 0 AT3G14830 501 / 5e-176 unknown protein
Lus10014986
[exp]
50 / 2e-06 AT4G25570 331 / 8e-115 Cytochrome b561/ferric reductase transmembrane protein family (.1)
PFAM info
Representative CDS sequence
>Potri.003G026500.1 pacid=42787104 polypeptide=Potri.003G026500.1.p locus=Potri.003G026500 ID=Potri.003G026500.1.v4.1 annot-version=v4.1
ATGTCGGTAGAAAGATCATTTGAAGCATGGGAGGAGGTCCAAAGGCATGGCCAGGACTTCGCAGACCGGCTAGCTCAAGGCTTTACAGGCCTTATACAGT
CACATATAACTTACCCACCTGCGTTTTCTTGGCCAAACCCTCCAAAATCGAAGCTTTTCGATGTGGAGTTTCCGGGACACGGTTTTAGTAAAGGGGATTT
TGGGGTTTTGACTGATAATTCTGGGATAAATGGGTTTTCGGCGATTTTGGATGTTGGAAATAGGATTGGACAAGCTGGGGCTGATTTTGGTGCGGCTTTG
AATGGGATGGTGCATCAGTTTTTTAGGAGATTGCCGGTGCCGTTTAAGCAGGATGAGACTGGGGGGGTTGGGGTGAGGATGGATGGTAAAAGGAGTGAGG
TGGGGTTGGGTTTGGAGGGAGAGTTGGGTTTGGTTAGTGAGAGGTTGAGGGATTTTGGGTTTGTGGAGGATAATGGTGGTGGTGGTGGAGTGGACGGCTT
GTTGGAAGAGGAGATTGGAGGGTTAAATTTGAAGGGTGTGGGATATCTTGGTAAACCACAGGGGACTATAAACATTACCTCAACTTATGACAGCAGAACT
CACAACATTGAGAGTTCTTTGGTTGCAAGGGGAGATTTATGGAGAGTAGAGGCATCACATGGAAGTTCCACATCAGAAAATGATAATTCATCTCTGTTCC
TAGTCCAGCTTGGACCTGTGCTGATTTTGCGTGATTCAACCTTTCTTCTGCCCGTGCATCTGTCAAAGCAACACTTGCTTTGGTATGGCTATGATAGAAA
GAGTGGAATGCATTCTCTGTGTCCAGCTGTGTGGTCAAAGCATCGAAGGTGGTTGTTAATGTCAATGCTATGTCTCAATCCTATAGCTTGTTCATTTGTG
GATTTACAGTTTCCAAATGGGCAATTGACTTATGTATCTGGTGAGGGGCTGTCTACCAGTGCTTTTGCACCTCTTTGCGGAGGTCTTCTTCAAGCTCAAG
GGCAATATCCTGGGGAAATGAGATTCAGCTTCTCTTGTAAGAATAAGTGGGGAACACGAATCACACCGATGGTACAGTGGCCTGACAAATCCTTTACATT
AGGTTTTGCACAATCTTTGGCATGGCAGAGATCTGGTCTTATGGTGAGGCCAACTGCTCAGTTCAGTTTGTGCCCCACTTTTGGTGGAAGCAATCCTGGG
TTGCATGCAGAACTGATTCATTCAGTGAATGACCATTTGAATCTGATATGTGGCTGTGCTGCGACGACACACCCTTCCGCATTTGCATCGCTATCAATTG
GAAGGTCTAAATGGAATGGTAATGTTGGGAGCTCAGGATTTGTTCTGAGACTCGATGCCCCTCTCTCCAATGTTGGCCAACCTTCCTTTTCTGTTCAGAT
AAATAGTGGTATTGAGTTTTGA
AA sequence
>Potri.003G026500.1 pacid=42787104 polypeptide=Potri.003G026500.1.p locus=Potri.003G026500 ID=Potri.003G026500.1.v4.1 annot-version=v4.1
MSVERSFEAWEEVQRHGQDFADRLAQGFTGLIQSHITYPPAFSWPNPPKSKLFDVEFPGHGFSKGDFGVLTDNSGINGFSAILDVGNRIGQAGADFGAAL
NGMVHQFFRRLPVPFKQDETGGVGVRMDGKRSEVGLGLEGELGLVSERLRDFGFVEDNGGGGGVDGLLEEEIGGLNLKGVGYLGKPQGTINITSTYDSRT
HNIESSLVARGDLWRVEASHGSSTSENDNSSLFLVQLGPVLILRDSTFLLPVHLSKQHLLWYGYDRKSGMHSLCPAVWSKHRRWLLMSMLCLNPIACSFV
DLQFPNGQLTYVSGEGLSTSAFAPLCGGLLQAQGQYPGEMRFSFSCKNKWGTRITPMVQWPDKSFTLGFAQSLAWQRSGLMVRPTAQFSLCPTFGGSNPG
LHAELIHSVNDHLNLICGCAATTHPSAFASLSIGRSKWNGNVGSSGFVLRLDAPLSNVGQPSFSVQINSGIEF

DESeq2's median of ratios [POPLAR]

Mapped by: Order by: Show schematic diagram

Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol NWA:WTNWB:WTNWA:OE-ARK2NWB:OE-ARK2NWA:miRNA-ARK2NWB:miRNA-ARK2NW 0hrWT H20WT-NWTUA1dEY NWTUA1dEY+TUB15 NWTUA1dY+TUB9 NWPde NWNWA:WT GANWBWT GATW:WTTW:WT GANWA:OE-ARK2 GANWB:OE-ARK2 GATW:OE-ARK2TW:OE-ARK2 GANWA:miRNA-ARK2 GANWB:miRNA-ARK2 GATW:miRNA-ARK2TW:miRNA-ARK2 GATW 2hrTW 8hrTW 24hrTW 48hrTW 96hrTW 336hrWT ACC35S::etr1-1 H2035S::etr1-1 ACCLMX5::etr1-1 H20LMX5::etr1-1 ACCWT-TWTUA1dEY TWTUA1dEY+TUB15 TWTUA1dY+TUB9 TWPde TWOW:WTOW:WT GAOW:OE-ARK2OW:OE-ARK2 GAOW:miRNA-ARK2OW:miRNA-ARK2 GAOW 2hrOW 8hrOW 24hrOW 48hrOW 96hrOW 336hrRoot CTRRoot LongColdRoot LongDrougtRoot LongHeatRoot LongSaltRoot ShortColdRoot ShortDrougtRoot ShortHeatRoot ShortSaltPtr rootLeaf CTRLeaf LongColdLeaf LongDrougtLeaf LongHeatLeaf LongSaltLeaf ShortColdLeaf ShortDrougtLeaf ShortHeatLeaf ShortSaltPtr leafStem CTRStem LongColdStem LongDrougtStem LongHeatStem LongSaltStem ShortColdStem ShortDrougtStem ShortHeatStem ShortSaltPtr shootPtr xylemPtr phloemPtr fiberPtr vesselPtr fiber vessel ray
AT3G14830 unknown protein Potri.003G026500
[exp]
0 1
AT5G67170 SEC-C motif-containing protein... Potri.005G140500
[exp]
1.73 0.7684
AT5G64550 loricrin-related (.1) Potri.001G206600
[exp]
2.00 0.7818
AT3G14830 unknown protein Potri.001G386700
[exp]
2.44 0.7587
AT5G57710 Double Clp-N motif-containing ... Potri.006G175200
[exp]
4.00 0.7397
AT3G03140 Tudor/PWWP/MBT superfamily pro... Potri.019G048100
[exp]
4.24 0.7380
AT3G16620 ATTOC120 ARABIDOPSIS THALIANA TRANSLOCO... Potri.009G131200
[exp]
7.21 0.7828
AT5G62000 ARF ORE14, HSS, ARF... ORESARA 14, HLS1 SUPPRESSOR, A... Potri.015G105300
[exp]
11.40 0.7268 Pt-ARF2.1
AT2G17030 F-box family protein with a do... Potri.004G179685
[exp]
12.24 0.7212
AT5G19900 PRLI-interacting factor, putat... Potri.003G214300
[exp]
16.00 0.7668
AT2G26280 CID7 CTC-interacting domain 7 (.1) Potri.006G218900
[exp]
17.94 0.7018

Potri.003G026500 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.