Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G15780 159 / 2e-46 unknown protein AT1G15790 97 / 1e-26 unknown protein AT2G10440 54 / 2e-09 unknown protein
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.003G012400 [exp] 207 / 4e-63 AT1G15780 557 / 2e-175 unknown protein Potri.003G028089 [exp] 202 / 9e-62 AT1G15780 223 / 5e-60 unknown protein Potri.001G204900 [exp] 188 / 2e-56 AT1G15780 575 / 0.0 unknown protein Potri.003G025200 [exp] 157 / 3e-51 AT1G15780 139 / 2e-39 unknown protein Potri.003G014156 [exp] 135 / 5e-43 AT1G15780 110 / 4e-30 unknown protein Potri.003G028245 [exp] 135 / 5e-43 AT1G15780 110 / 4e-30 unknown protein
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10015323 [exp] 166 / 1e-48 AT1G15780 587 / 0.0 unknown protein Lus10025452 [exp] 165 / 3e-48 AT1G15780 248 / 3e-68 unknown protein Lus10025448 [exp] 92 / 2e-24 AT1G15780 80 / 9e-18 unknown protein Lus10015322 [exp] 86 / 3e-20 AT1G15780 164 / 1e-41 unknown protein Lus10015321 [exp] 77 / 1e-17 AT1G15780 78 / 5e-16 unknown protein Lus10023978 [exp] 68 / 1e-15 AT1G15780 71 / 4e-15 unknown protein Lus10012027 [exp] 61 / 8e-12 AT4G12020 102 / 2e-24 MAPK/ERK KINASE KINASE 4, MITOGEN-ACTIVATED PROTEIN KINASE KINASE KINASE 11, protein kinase family protein (.1.2.3) Lus10025449 [exp] 39 / 6e-05 AT1G15780 42 / 7e-06 unknown protein
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0589 [poplar] [flax] KIX_like PF16987 [poplar] [flax] KIX_2 KIX domain
Representative CDS sequence Show only first row Show all	>Potri.003G026510.1 pacid=42784522 polypeptide=Potri.003G026510.1.p locus=Potri.003G026510 ID=Potri.003G026510.1.v4.1 annot-version=v4.1 ATGATAGAAGTGATTTTTTTGGTTGGCCATAACCCCATGGATGCCAATAATTGGAGGCCCACTGCCCCAGGCGGAGAACCTGTCATTGACACGGGTGATT GGAGAATTCAATTGCAGCCTGACTCACGGAAAAGAATAGTCGACAAAATAATAGAGATATTAAAGAGGCATCTTCCGTTTTCTGGTCAAGAGGGATTACA AGAACTCAAGAAAATTGTTGTACGGTTTGAGGAAAAGATTTATACTGCCGCCACCAATCAGTCTGATTATCTGCGTAAAATATCTCTGAAAATGCTTACA ATGGAGACCAGGTCTCAAAATACCATACCCACTGGCAATGGAATATCTGCAGATGGCCATTCCCAAAGCGAAAACTAA
AA sequence Show only first row Show all	>Potri.003G026510.1 pacid=42784522 polypeptide=Potri.003G026510.1.p locus=Potri.003G026510 ID=Potri.003G026510.1.v4.1 annot-version=v4.1 MIEVIFLVGHNPMDANNWRPTAPGGEPVIDTGDWRIQLQPDSRKRIVDKIIEILKRHLPFSGQEGLQELKKIVVRFEEKIYTAATNQSDYLRKISLKMLT METRSQNTIPTGNGISADGHSQSEN

---

DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT1G15780			unknown protein		Potri.003G026510 [exp]	0	1
AT3G07020		UGT80A2, SGT	UDP-glucosyl transferase 80A2,...		Potri.002G238600 [exp]	1.00	0.9171
					Potri.007G067650 [exp]	6.63	0.8804
					Potri.019G120050 [exp]	8.00	0.8472
AT5G05800			unknown protein		Potri.001G195601 [exp]	8.48	0.9030
AT1G28760			Uncharacterized conserved prot...		Potri.019G039401 [exp]	8.88	0.8354
					Potri.019G087800 [exp]	9.59	0.8261
AT5G33340		CDR1	CONSTITUTIVE DISEASE RESISTANC...		Potri.003G087900 [exp]	13.26	0.8875
					Potri.008G213423 [exp]	13.74	0.8783
					Potri.017G045800 [exp]	14.96	0.8720
AT2G19070		SHT	spermidine hydroxycinnamoyl tr...		Potri.006G165200 [exp]	18.76	0.7899

Compare expression of checked genes

Potri.003G026510 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.