Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	No hit found
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.003G026914 [exp] 214 / 5e-65 AT1G07390 444 / 1e-137 receptor like protein 1 (.1.2.3) Potri.005G008600 [exp] 196 / 7e-59 AT1G74190 310 / 1e-91 receptor like protein 15 (.1) Potri.003G026308 [exp] 185 / 1e-54 AT1G74190 423 / 1e-130 receptor like protein 15 (.1) Potri.003G028557 [exp] 160 / 7e-46 AT1G07390 388 / 1e-117 receptor like protein 1 (.1.2.3) Potri.005G009300 [exp] 159 / 1e-45 AT1G07390 449 / 9e-140 receptor like protein 1 (.1.2.3) Potri.003G013200 [exp] 150 / 1e-42 AT2G25470 453 / 6e-144 receptor like protein 21 (.1) Potri.003G013700 [exp] 142 / 1e-39 AT2G25470 366 / 2e-110 receptor like protein 21 (.1) Potri.005G006701 [exp] 137 / 8e-38 AT1G74190 438 / 3e-136 receptor like protein 15 (.1) Potri.005G013800 [exp] 120 / 6e-32 AT1G74190 432 / 2e-135 receptor like protein 15 (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10006824 [exp] 43 / 5e-05 AT3G23110 185 / 2e-50 EMBRYO DEFECTIVE 2800, receptor like protein 37 (.1) Lus10011039 [exp] 41 / 0.0003 AT3G11010 367 / 5e-110 receptor like protein 34 (.1) Lus10032335 [exp] 40 / 0.0004 AT3G23110 372 / 7e-116 EMBRYO DEFECTIVE 2800, receptor like protein 37 (.1)
PFAM info
Representative CDS sequence Show only first row Show all	>Potri.003G027933.1 pacid=42787156 polypeptide=Potri.003G027933.1.p locus=Potri.003G027933 ID=Potri.003G027933.1.v4.1 annot-version=v4.1 ATGACACAAGAGACAAAGAAAATGATGGCTATTATCGACAATTTCTCTGGTTTTGAGATCATATCATCACATTTGAGGAAACTCGAGAATCTAGACCTGA GCTATAATATATTCAACGACAACATTTTATCACATCTGCGTGGATTTTCTTATCTCAAGTCTTTAAATTTATCAGGCGATATGTTGCTAGGATCGACGAC TGTCTATGGTTTAAGGAAGTCGGACTTCCTGCAGTCATTGCCATCCCTGAAGATCCTTTCTCTTAAGGATACTAATTTAAATCAAGGGACTTTCTTCAAT TCTAGCACCCTTGAAGAATTGTATCTAGATCGTACTTCTCTCCTAATAAACTTTTTCCATAACATTGGAGCATTGCCTGCTCTTCAAGTTTTGTCTATTG GTGAATGTGACCTCTATGTCACTTTACCCGCTCAAGGTAAATTAACAAATATAATCACATCATCAATAAAAGATTCTTTTAACACTATTTTGACTGTTTA A
AA sequence Show only first row Show all	>Potri.003G027933.1 pacid=42787156 polypeptide=Potri.003G027933.1.p locus=Potri.003G027933 ID=Potri.003G027933.1.v4.1 annot-version=v4.1 MTQETKKMMAIIDNFSGFEIISSHLRKLENLDLSYNIFNDNILSHLRGFSYLKSLNLSGDMLLGSTTVYGLRKSDFLQSLPSLKILSLKDTNLNQGTFFN SSTLEELYLDRTSLLINFFHNIGALPALQVLSIGECDLYVTLPAQGKLTNIITSSIKDSFNTILTV

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
					Potri.003G027933 [exp]	0	1
AT2G33150		PED1, KAT2, PKT...	PEROXISOME DEFECTIVE 1, 3-KETO...		Potri.001G051800 [exp]	5.19	0.8565
					Potri.006G095100 [exp]	6.78	0.8815
AT1G09740			Adenine nucleotide alpha hydro...		Potri.005G157100 [exp]	9.38	0.8655
AT1G07860			unknown protein		Potri.009G093700 [exp]	9.53	0.8587
AT3G19860	bHLH	bHLH121	basic Helix-Loop-Helix 121, ba...		Potri.004G168100 [exp]	13.71	0.8025
AT3G17380			TRAF-like family protein (.1)		Potri.017G049100 [exp]	25.76	0.8586
					Potri.006G095200 [exp]	26.72	0.8379
AT3G21610			Acid phosphatase/vanadium-depe...		Potri.014G156000 [exp]	27.45	0.8399
AT1G11800			endonuclease/exonuclease/phosp...		Potri.004G010900 [exp]	31.74	0.8087
AT2G18460		LCV3	like COV 3 (.1)		Potri.005G124100 [exp]	40.12	0.8223

Compare expression of checked genes

Potri.003G027933 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.