Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G15780 161 / 2e-44 unknown protein AT2G10440 71 / 2e-13 unknown protein AT1G15770 68 / 6e-13 unknown protein AT1G15772 45 / 2e-06 unknown protein
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.003G013000 [exp] 370 / 1e-129 AT1G15780 171 / 5e-48 unknown protein Potri.003G013300 [exp] 275 / 1e-92 AT1G15780 120 / 5e-31 unknown protein Potri.003G013900 [exp] 255 / 7e-86 AT1G15780 61 / 3e-11 unknown protein Potri.003G028089 [exp] 215 / 2e-63 AT1G15780 223 / 5e-60 unknown protein Potri.003G012400 [exp] 210 / 3e-61 AT1G15780 557 / 2e-175 unknown protein Potri.001G204900 [exp] 194 / 1e-55 AT1G15780 575 / 0.0 unknown protein Potri.003G014000 [exp] 107 / 2e-26 AT1G15780 157 / 2e-41 unknown protein
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10015323 [exp] 173 / 2e-48 AT1G15780 587 / 0.0 unknown protein Lus10025452 [exp] 171 / 1e-47 AT1G15780 248 / 3e-68 unknown protein Lus10015322 [exp] 139 / 1e-36 AT1G15780 164 / 1e-41 unknown protein Lus10025451 [exp] 115 / 2e-29 AT1G15780 137 / 6e-35 unknown protein
PFAM info
Representative CDS sequence Show only first row Show all	>Potri.003G028401.1 pacid=42786043 polypeptide=Potri.003G028401.1.p locus=Potri.003G028401 ID=Potri.003G028401.1.v4.1 annot-version=v4.1 ATGCCCCCTCAAGTTCAGAATCATGGGTTGTTTCTCCCTATCCTATTGTCCACTAATCAGTCTCAAGCACGCCAACAGTTGTTATCACAGAACATGCAGA ATTGCATGGCATCTAATGGAGTTCAAAGTTTTGCTGGTTTACAAGCGACACTGCCTCTTGTCTCCGGTGTAACCCAGACTATCCCTAACACTGTTGTCCA GGATCCTAACATGCAAAGTATCCCTGGTGTTTCACAGAACTCAGTGGGGAATTCAATGGGACAAGGGAATCCCTCCACTATGTTTGCCAATTCTCAGAGA CAAATGCCAGCATCCCTAGATTCTACAGCACAGACTGGACATGCAAAAGGCGCTGATTGGCAAGAGGAGATCTATCAGAAGATCAAAGTCATGAAGGAGA CTTATTTCCTTGAAATAAATGAAATATACCAGAGAATTGCTGCCAAGTTACAGCAGGAGTTGTACCGGGAGCAGGGCATCAGGCAGGAGGAGCTGGGCTA TCACGAGCAGACGCTTGACTCTCATTCGCAACAACCGAAGTCAGAACAACTTGAAAAGCTGGAGGTTTTCAAGGTCATGTTGGAGCGCTTGATAACATTC TTACAGGTCTCTAAAAACAACGTCACACCTAGTTTCAAGGAGAAATTGGGTTCCTATGAGAAGCAGATTGTAAGTTTTCTAAACCCAAGCAGATTCAGGA GGCCTATTCCTAATCTACAGCTCGGACAACTTCCCCAGCCTCCAGTTCATCAATTGCAGTCCCATGAAAATCAACTAAATCCCCAGTTGCAATCATTGAA TGTGCAAGGTTCTATACCAACAATGCAGCAGAACAATATGTCAAGCTTGCAACATGGTTCTCTTTCATCTTTATCTGGGGTTTCCATGTCACAACCAATT ATGATGATGCGGGACGAGAGATTTTAA
AA sequence Show only first row Show all	>Potri.003G028401.1 pacid=42786043 polypeptide=Potri.003G028401.1.p locus=Potri.003G028401 ID=Potri.003G028401.1.v4.1 annot-version=v4.1 MPPQVQNHGLFLPILLSTNQSQARQQLLSQNMQNCMASNGVQSFAGLQATLPLVSGVTQTIPNTVVQDPNMQSIPGVSQNSVGNSMGQGNPSTMFANSQR QMPASLDSTAQTGHAKGADWQEEIYQKIKVMKETYFLEINEIYQRIAAKLQQELYREQGIRQEELGYHEQTLDSHSQQPKSEQLEKLEVFKVMLERLITF LQVSKNNVTPSFKEKLGSYEKQIVSFLNPSRFRRPIPNLQLGQLPQPPVHQLQSHENQLNPQLQSLNVQGSIPTMQQNNMSSLQHGSLSSLSGVSMSQPI MMMRDERF

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT1G15780			unknown protein		Potri.003G028401 [exp]	0	1
AT4G24520		AR1, ATR1	ARABIDOPSIS CYTOCHROME REDUCTA...		Potri.002G106566 [exp]	2.44	0.9200
AT1G54850			HSP20-like chaperones superfam...		Potri.013G024900 [exp]	8.30	0.8738
					Potri.004G093250 [exp]	11.18	0.8693
AT3G13850	AS2	LBD22	LOB domain-containing protein ...		Potri.003G039700 [exp]	19.23	0.8487
AT5G47820		FRA1	FRAGILE FIBER 1, P-loop contai...		Potri.007G046700 [exp]	19.62	0.8282	Pt-KICP.1
AT5G53310			myosin heavy chain-related (.1...		Potri.015G023400 [exp]	20.34	0.8505
AT5G24400		PGL3, EMB2024	6-PHOSPHOGLUCONOLACTONASE 3, E...		Potri.015G008401 [exp]	20.97	0.8474
AT5G11330			FAD/NAD(P)-binding oxidoreduct...		Potri.006G248800 [exp]	21.16	0.8077
					Potri.001G443025 [exp]	21.33	0.8067
					Potri.008G089401 [exp]	22.18	0.8653

Compare expression of checked genes

Potri.003G028401 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.