Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G07390 389 / 7e-118 AtRLP1 receptor like protein 1 (.1.2.3) AT1G58190 371 / 2e-111 AtRLP9 receptor like protein 9 (.1.2) AT1G74170 362 / 2e-108 AtRLP13 receptor like protein 13 (.1) AT1G74190 358 / 4e-107 AtRLP15 receptor like protein 15 (.1) AT5G49290 356 / 6e-107 ATRLP56 receptor like protein 56 (.1) AT1G74180 357 / 1e-106 AtRLP14 receptor like protein 14 (.1) AT2G25470 354 / 6e-106 AtRLP21 receptor like protein 21 (.1) AT3G53240 333 / 8e-99 AtRLP45 receptor like protein 45 (.1) AT2G34930 256 / 3e-71 disease resistance family protein / LRR family protein (.1) AT1G54470 247 / 5e-68 RPP27 resistance to Peronospora parasitica 27, RNI-like superfamily protein (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.003G013700 [exp] 1858 / 0 AT2G25470 366 / 2e-110 receptor like protein 21 (.1) Potri.003G026914 [exp] 1602 / 0 AT1G07390 444 / 1e-137 receptor like protein 1 (.1.2.3) Potri.003G026308 [exp] 1451 / 0 AT1G74190 423 / 1e-130 receptor like protein 15 (.1) Potri.005G009300 [exp] 1301 / 0 AT1G07390 449 / 9e-140 receptor like protein 1 (.1.2.3) Potri.003G025100 [exp] 1227 / 0 AT1G74190 432 / 2e-135 receptor like protein 15 (.1) Potri.003G013200 [exp] 1193 / 0 AT2G25470 453 / 6e-144 receptor like protein 21 (.1) Potri.005G013200 [exp] 1184 / 0 AT1G58190 453 / 1e-142 receptor like protein 9 (.1.2) Potri.005G006701 [exp] 1113 / 0 AT1G74190 438 / 3e-136 receptor like protein 15 (.1) Potri.005G013800 [exp] 1079 / 0 AT1G74190 432 / 2e-135 receptor like protein 15 (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10030068 [exp] 439 / 4e-138 AT5G49290 397 / 3e-124 receptor like protein 56 (.1) Lus10042381 [exp] 391 / 5e-119 AT1G74190 289 / 1e-82 receptor like protein 15 (.1) Lus10027856 [exp] 288 / 6e-82 AT1G74190 272 / 1e-77 receptor like protein 15 (.1) Lus10016339 [exp] 267 / 1e-74 AT2G34930 495 / 2e-160 disease resistance family protein / LRR family protein (.1) Lus10016340 [exp] 263 / 6e-73 AT2G34930 492 / 8e-159 disease resistance family protein / LRR family protein (.1) Lus10016384 [exp] 260 / 7e-72 AT2G34930 464 / 5e-148 disease resistance family protein / LRR family protein (.1) Lus10001035 [exp] 256 / 1e-70 AT2G34930 488 / 9e-157 disease resistance family protein / LRR family protein (.1) Lus10016342 [exp] 253 / 8e-70 AT2G34930 478 / 4e-154 disease resistance family protein / LRR family protein (.1) Lus10016341 [exp] 237 / 2e-64 AT2G34930 482 / 3e-155 disease resistance family protein / LRR family protein (.1) Lus10002758 [exp] 235 / 7e-64 AT2G34930 443 / 1e-140 disease resistance family protein / LRR family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0022 [poplar] [flax] LRR PF00560 [poplar] [flax] LRR_1 Leucine Rich Repeat CL0022 [poplar] [flax] PF08263 [poplar] [flax] LRRNT_2 Leucine rich repeat N-terminal domain CL0022 [poplar] [flax] LRR PF13855 [poplar] [flax] LRR_8 Leucine rich repeat
Representative CDS sequence Show only first row Show all	>Potri.003G028557.1 pacid=42785286 polypeptide=Potri.003G028557.1.p locus=Potri.003G028557 ID=Potri.003G028557.1.v4.1 annot-version=v4.1 ATGATGATGAAAAGAATGGGGGCTTGGATGTTGCTAGCATTATTGACTTTGATTGGCGAATGGTCTGGTCGTTGTTATGGGTGTTTGGAGGAAGAGAGGA TTGGTCTCTTGGAGATCCAATCTTTGATCGACCCAGATGGCATTTCCTTGAGACATTGGGTGGACAGTAGTAATTGTTGTGAGTGGCCTGAAATCGAGTG TGATAACACTACAAAGCGAGTGATCCAACTCTCTCTTAGTGAAGCAAGGGATTATAGCTTGGGCGATTGGGTTCTCAACGCATCTTTGTTTCAGCCTTTC AAAGAATTGCAAAGTCTTGATTTGGGATATACTAGATTGGTTGGTTGCATGGAGAATGAAGGCTTCGAAGTCCTATCATCAAAACTGAGCAATCTTGACC TACGTGTTAACCAATTTACTAATGATAAAAGCATTTTGTCATGTTTCAATGGTAACCTTTCCACTCTCAAGTCTTTGGATCTATCAGACAATTGGTTGAC AGCTGGATCAGGTTTCAAAGTCTTGTCATCAAGGTTGAAAAAGCTGGAGAACCTTCATCTATGGGGGAATCAATTCAACGATAGCATTTGTCCATCTCTA ACTGGATTTTCATCCCTCAAGTCTTTGGATCTATCGTTCAATCAGCTGACAGGATCAGGTTTCAAAGTCTTGTCATCAAGGTTGAAAAAGCTGGAGAACC TTCATCTATGGGAGAATCAATTCAACGATAGCATTTTTCCATCTCTAACTGGATTTTCATCCCTCAAGTCTTTGGATCTGTCCTACAATGAGTTGACAGG ATCAGGTTTTGAGATCATATCATCACATTTGAGGAAACTCGAGAACCTGGACCTGAGCCATAATATATTCAACGACAGCATTTTATCACATCTGCGTGGA TTTTCTTCTCTCAAGTCTTTAAATTTATCATATAATGAGTTGACAGGATCGACGACTGTCAATGGGACTTTCTTCAATTCTAGCACCCTTGAAGAATTGC ATCTAGATCGTACTTCTCTCCCAATAAACTTTCTCCAGAATATTGGAGCATTGCCTGCTCTTCAAGTCTTGTCTGTTGGTGGATGTGACCTCCATGGCAC CCTACCCGCTCAAGGTTGGTGTGAATTGAAGAATCTGAAGCAGTTAGATATCTCTGGAAATAATTTAGGAGGTTCACTCCCAGATTGTATGGGAAACTTG TTATCTTTACAACTATTAGATGTTTCTGAAAACCAAATTACTGGAAATATTGCCTCTAGTCCCCTTACCAACCTCATATCCCTTGTATTCCTCTCACTAT CAAATAACCTCTTTGAAGTTCCCACTTCAATGAAGCCTTTTTTGAACCACTCAAGCCTCAAGTTCTTCTCTAGTGAGAACAACAGACTAGTAGCAGAACC TGCTGCCTTTCATGATTTGATTCCAAAGTTCCAACTAGTCTTTTTTAGCTTGTCAAAAACGACAGAAGCACTCAATGTAGAAATTCCCAACTTCCTCTAT TACCAATACCACTTAAGACTCCTTGATCTCTCCCACAACAACATCACCGGAATGTTTCCATCGTGGTTGCTTAAGAACAATACACGATTGGAGCAATTAT ATCTGAGCGAGAACTCCTTTGTTGGTACTTTGCAGTTGCAAGATCACCCATATCCAAATATGACCGAATTAGATATATCAAACAACAACATGAGCGGTCA AATTCCAAAAGATATTTGTTTGATCTTTCCAAATCTACAAACCTTAATGATGGCTAAGAATGGATTCACAGGTTGTATTCCTTCTTGTTTAGGAAATATT AGCTCTTTGGAAATGTTAGATTTATCCAACAATCAATTGTCCACAATAAAACTAGGACAACTAACAACATTATTGTTTCTCAACCTGTCAAACAACAATT TGGGTGGTAACAACTTTTGGGGTCAGATATCAGATTTTCCATTATATGGGTGGAAAAAGTGGATTGTATTGGATTTGAGTTACAATCAATTTTCAGGCAT GCTTCCAAGGTGGTTCGTCAATTCTACGGACCTTAGAGTAATTAATTTGTCCAAAAATCATTTTAAGGGTCCGATCCATAGAGACTTTTGTAAGCTTGGC CACCTTGAGTATTTGGACCTTTCTGAGAACAACTTGTCTGGATATATACCATCTTGTTTTAGTCCACCACAAATAACCCATGTGCATCTATCCAAAAATA GATTGAGTGGTCCATTAACATATGGATTTTATAACAGCTCTTCCCTGGTTACGATGGATCTTCGAGATAACAGCTTCACCGGCTCCATTCCAAATTGGAT TGGCAATCTTTCATCATTGAGTGTTCTTCTTCTAAAGGCTAATCACTTTGATGGTGAGCTCCCTGTTCAGTTATGCTTGTTAGAACAGTTAAGCATTTTG GATGTTTCAGAAAACCAGCTCTCTGGTCCAATACCATCATGTTTGGGCAATCTTACTTTCATGGCAAGTTCCCAGAAAGCGTTTGTGGATCTCAATGTTG ATTTTGGATCATGGTCCATAGAAAGAGCTTATTATGAAACAATGGGTCCACCACTAGTTAATAGTATGTACAGCTTGAGAAAGGATTTTATGGTTAACTT TACAGAAGTGATAGAATTTACAACTAAAAATATGTATTATTGTTACAAGGGGAAGATTCTCGGCTACATGTCTGGTATTGATCTCTCCAATAACAACTTC GTAGAAGCAATCCCACCAGAATTTGGAAACTTAAGTGAGTTACTATCATTAAACTTATCACACAACAATCTCACTGGATCTGTCCCTGCAACATTCTCAA ACCTAAAGCAGATTGAGAGTTTGGATCTTTCTTACAACAACTTGAATGGTGTCATCCCTCCACAACTTACTGAAATTACCATGCTAGAAGTTTTTAGTGT GGCGCACAATAACTTGTCAGGTAAGACACCTGAGAGAAAATTTCAATTTGGGACCTTCGATGAAAGTTGTTACGAAGGAAATCCTTTCTTGTGTGGACCT CCATTGCGAAACAATTGTAGTGAGGAAGCAGTGTCATCTCAGCTAGTGCCTGATGATGAACAAGGAGATGATGGTTTCATAGACATTGACTTTTTCTACA TCAGTTTTGGTGTATGTTACACAGTTGTGGTGATGACGATTGCAATAGTTCTCTACATCAATCCATATTGGCGACGCAGGTGGTTGTACTTCATTGAAGA CTGCATAGATACTTGCTACTATTTTGTGGTGGCTAGTTTTCGCAAGTTCTCCAACTTCAGAAGGTGA
AA sequence Show only first row Show all	>Potri.003G028557.1 pacid=42785286 polypeptide=Potri.003G028557.1.p locus=Potri.003G028557 ID=Potri.003G028557.1.v4.1 annot-version=v4.1 MMMKRMGAWMLLALLTLIGEWSGRCYGCLEEERIGLLEIQSLIDPDGISLRHWVDSSNCCEWPEIECDNTTKRVIQLSLSEARDYSLGDWVLNASLFQPF KELQSLDLGYTRLVGCMENEGFEVLSSKLSNLDLRVNQFTNDKSILSCFNGNLSTLKSLDLSDNWLTAGSGFKVLSSRLKKLENLHLWGNQFNDSICPSL TGFSSLKSLDLSFNQLTGSGFKVLSSRLKKLENLHLWENQFNDSIFPSLTGFSSLKSLDLSYNELTGSGFEIISSHLRKLENLDLSHNIFNDSILSHLRG FSSLKSLNLSYNELTGSTTVNGTFFNSSTLEELHLDRTSLPINFLQNIGALPALQVLSVGGCDLHGTLPAQGWCELKNLKQLDISGNNLGGSLPDCMGNL LSLQLLDVSENQITGNIASSPLTNLISLVFLSLSNNLFEVPTSMKPFLNHSSLKFFSSENNRLVAEPAAFHDLIPKFQLVFFSLSKTTEALNVEIPNFLY YQYHLRLLDLSHNNITGMFPSWLLKNNTRLEQLYLSENSFVGTLQLQDHPYPNMTELDISNNNMSGQIPKDICLIFPNLQTLMMAKNGFTGCIPSCLGNI SSLEMLDLSNNQLSTIKLGQLTTLLFLNLSNNNLGGNNFWGQISDFPLYGWKKWIVLDLSYNQFSGMLPRWFVNSTDLRVINLSKNHFKGPIHRDFCKLG HLEYLDLSENNLSGYIPSCFSPPQITHVHLSKNRLSGPLTYGFYNSSSLVTMDLRDNSFTGSIPNWIGNLSSLSVLLLKANHFDGELPVQLCLLEQLSIL DVSENQLSGPIPSCLGNLTFMASSQKAFVDLNVDFGSWSIERAYYETMGPPLVNSMYSLRKDFMVNFTEVIEFTTKNMYYCYKGKILGYMSGIDLSNNNF VEAIPPEFGNLSELLSLNLSHNNLTGSVPATFSNLKQIESLDLSYNNLNGVIPPQLTEITMLEVFSVAHNNLSGKTPERKFQFGTFDESCYEGNPFLCGP PLRNNCSEEAVSSQLVPDDEQGDDGFIDIDFFYISFGVCYTVVVMTIAIVLYINPYWRRRWLYFIEDCIDTCYYFVVASFRKFSNFRR

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT1G07390		AtRLP1	receptor like protein 1 (.1.2....		Potri.003G028557 [exp]	0	1
AT1G07390		AtRLP1	receptor like protein 1 (.1.2....		Potri.005G008800 [exp]	1.41	0.9598
AT2G25470		AtRLP21	receptor like protein 21 (.1)		Potri.003G013700 [exp]	1.41	0.9522
AT2G25470		AtRLP21	receptor like protein 21 (.1)		Potri.003G013200 [exp]	3.87	0.9476
AT1G07390		AtRLP1	receptor like protein 1 (.1.2....		Potri.003G026914 [exp]	4.00	0.9402
AT1G07390		AtRLP1	receptor like protein 1 (.1.2....		Potri.005G009300 [exp]	4.89	0.9193
AT1G07390		AtRLP1	receptor like protein 1 (.1.2....		Potri.003G013156 [exp]	8.30	0.8723
AT1G21270		WAK2	wall-associated kinase 2 (.1)		Potri.009G154500 [exp]	11.22	0.8745
					Potri.010G007921 [exp]	14.49	0.9000
					Potri.010G007976 [exp]	14.69	0.8758
AT2G45850	AT-hook		AT hook motif DNA-binding fami...		Potri.002G158200 [exp]	15.39	0.7422

Compare expression of checked genes

Potri.003G028557 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.