Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G80490 1923 / 0 TPR1 TOPLESS-related 1 (.1.2) AT1G15750 1919 / 0 TPL, WSIP1 WUS-INTERACTING PROTEIN 1, TOPLESS, Transducin family protein / WD-40 repeat family protein (.1.2.3.4) AT3G15880 1580 / 0 WSIP2, TPR4 TOPLESS-RELATED 4, WUS-interacting protein 2 (.1.2.3) AT3G16830 1357 / 0 TPR2 TOPLESS-related 2 (.1) AT5G27030 1326 / 0 TPR3 TOPLESS-related 3 (.1.2) AT2G25420 220 / 5e-60 transducin family protein / WD-40 repeat family protein (.1) AT3G49660 70 / 2e-12 AtWDR5a human WDR5 \(WD40 repeat\) homolog a, Transducin/WD40 repeat-like superfamily protein (.1) AT2G43770 57 / 2e-08 Transducin/WD40 repeat-like superfamily protein (.1) AT5G67320 58 / 4e-08 HOS15 high expression of osmotically responsive genes 15, WD-40 repeat family protein (.1) AT5G25150 56 / 2e-07 TAF5 TBP-associated factor 5 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G200500 [exp] 2082 / 0 AT1G15750 1922 / 0.0 WUS-INTERACTING PROTEIN 1, TOPLESS, Transducin family protein / WD-40 repeat family protein (.1.2.3.4) Potri.018G128000 [exp] 1648 / 0 AT3G15880 1650 / 0.0 TOPLESS-RELATED 4, WUS-interacting protein 2 (.1.2.3) Potri.006G066800 [exp] 1642 / 0 AT3G15880 1689 / 0.0 TOPLESS-RELATED 4, WUS-interacting protein 2 (.1.2.3) Potri.013G081300 [exp] 1485 / 0 AT1G15750 1540 / 0.0 WUS-INTERACTING PROTEIN 1, TOPLESS, Transducin family protein / WD-40 repeat family protein (.1.2.3.4) Potri.006G257900 [exp] 1451 / 0 AT1G80490 1466 / 0.0 TOPLESS-related 1 (.1.2) Potri.018G023900 [exp] 1436 / 0 AT1G80490 1420 / 0.0 TOPLESS-related 1 (.1.2) Potri.005G021700 [exp] 1368 / 0 AT5G27030 1714 / 0.0 TOPLESS-related 3 (.1.2) Potri.013G012100 [exp] 1357 / 0 AT5G27030 1698 / 0.0 TOPLESS-related 3 (.1.2) Potri.018G023800 [exp] 1204 / 0 AT1G80490 1195 / 0.0 TOPLESS-related 1 (.1.2)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10011481 [exp] 2004 / 0 AT1G15750 2011 / 0.0 WUS-INTERACTING PROTEIN 1, TOPLESS, Transducin family protein / WD-40 repeat family protein (.1.2.3.4) Lus10023119 [exp] 1948 / 0 AT1G15750 1959 / 0.0 WUS-INTERACTING PROTEIN 1, TOPLESS, Transducin family protein / WD-40 repeat family protein (.1.2.3.4) Lus10043258 [exp] 1642 / 0 AT3G15880 1776 / 0.0 TOPLESS-RELATED 4, WUS-interacting protein 2 (.1.2.3) Lus10006650 [exp] 1483 / 0 AT1G15750 1593 / 0.0 WUS-INTERACTING PROTEIN 1, TOPLESS, Transducin family protein / WD-40 repeat family protein (.1.2.3.4) Lus10038094 [exp] 1394 / 0 AT1G80490 1525 / 0.0 TOPLESS-related 1 (.1.2) Lus10029876 [exp] 1338 / 0 AT5G27030 1722 / 0.0 TOPLESS-related 3 (.1.2) Lus10020668 [exp] 1333 / 0 AT5G27030 1717 / 0.0 TOPLESS-related 3 (.1.2) Lus10019401 [exp] 1032 / 0 AT1G15750 1596 / 0.0 WUS-INTERACTING PROTEIN 1, TOPLESS, Transducin family protein / WD-40 repeat family protein (.1.2.3.4) Lus10011905 [exp] 853 / 0 AT3G15880 920 / 0.0 TOPLESS-RELATED 4, WUS-interacting protein 2 (.1.2.3) Lus10001951 [exp] 725 / 0 AT1G15750 1007 / 0.0 WUS-INTERACTING PROTEIN 1, TOPLESS, Transducin family protein / WD-40 repeat family protein (.1.2.3.4)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0186 [poplar] [flax] Beta_propeller PF00400 [poplar] [flax] WD40 WD domain, G-beta repeat
Representative CDS sequence Show only first row Show all	>Potri.003G030000.2 pacid=42787148 polypeptide=Potri.003G030000.2.p locus=Potri.003G030000 ID=Potri.003G030000.2.v4.1 annot-version=v4.1 ATGTCTTCTCTCAGTCGAGAGCTCGTTTTCCTGATCTTGCAGTTCCTGGATGAGGAGAAGTTCAAAGAGACTGTTCATAAGCTTGAGCAGGAATCTGGAT TTTTCTTTAACATGAAGTATTTTGAGGATGAGGTGCATAATGGCAATTGGGATGAGGTGGAGAAATACCTCTCTGGTTTCACTAAAGTAGACGACAATCG ATATTCTATGAAAATATTTTTCGAGATACGGAAGCAAAAGTATCTTGAAGCATTGGATAAGCATGATCGGTCCAAGGCGGTTGAAATATTGGTGAAGGAT TTGAAAGTATTTTCGACATTTAACGAGGAGCTTTTCAAGGAAATCACTCAACTACTGACATTGGAGAATTTTAGGGAGAATGAGCAACTTTCCAAATATG GAGATACCAAGTCGGCAAGGGCAATCATGTTGGTTGAGCTGAAGAAGCTTATTGAAGCAAACCCTTTGTTTCGTGACAAATTGCAGTTTCCTAACCTTAA GAATTCAAGGTTACGAACTCTCATTAACCAAAGCTTGAATTGGCAGCATCAACTTTGTAAAACCCCAAGGTCAAACCCTGATATAAAGACTCTTTTTTTC GATCATTCATGTGGACAACCAAATGGTGCTCGGGCTCCATCACCTGCAAACAATCCACTGCTTGGATCCTTACCAAAAGCTGGAGGGTTTCCTCCTCTGG GTGCTCACGGGCCATTTCAACCTACACCAGCACCAGTCCCAGCACCTCTTGCAGGTTGGATGTCCAATCCTCCCACAGTAACTCATCCAGCAGTTTCTGG AGGAGGAGCCATTGGTCTTGGTGCTCCATCTATCTCAGCTGCTCTGAAGCATCCACGGACTCCTCCATCTAACCCTTCGGTAGACTATCCTTCAGGAGAT CCTGACCATGTTGCTAAAAGAACAAGGCCAATGGGGATTTCTGATGAGGTAAATTTGCCCGTTAATGTATTGCCAATGTCATTTCCAGGGCATGGTCATG GTCATGGTCAGACTTTTAATGCACCGGATGACTTGCCAAAGGCTGTTGTACGGACTCTGAATCAGGGATCATCTCCTATGAGCATGGATTTCCATCCTGT TCAACAGACTATTCTTCTAGTTGGTACCAATGTGGGGGAAATTGGGCTGTGGGAAGTTGGTTCTAGGGAGCGACTGGTTTTAAGAAACTTCAAAGTTTGG GATCTGAATGCATGCTCGATGCCTCTTCAGGCAGCTTTAGTCAAAGATCCTGGCGTCTCTGTTAACCGTGTAATTTGGAGTCCAGATGGTAACTTGTTTG GAGTTGCGTACTCAAGGCATATTGTACAAATATATTCTTATCATGGGAATGATGATGTACGGCAGCACCTAGAGATTGATGCTCATGTTGGTGGAGTAAA TGATCTTGCATTCTCCACTCCGAATAAGCAACTTTGTGTTATAACCTGTGGTGATGACAAAATCATCAAGGTGTGGGATGCTGCCACTGGTGCAAAACAA TATACATTTGAAGGTCACGAGGCTCCTGTTTATTCCATCTGCCCACATTATAAGGAAAATATTCAGTTTATCTTTTCAACAGCACTGGATGGAAAGATAA AAGCATGGTTATATGACAATCTAGGATCTCGGGTTGATTATGAGGCTCCTGGTCGATGGTGCACAACCATGGCTTACAGTGCTGATGGTACAAGGCTTTT TTCTTGCGGTACAAGTAAAGATGGGGAATCCTACATTGTTGAATGGAATGAAAGTGAAGGTGCTGTGAAGAGAACCTATGTTGGATTTAGAAAACATTCT TTGGGTGTCGTGCAATTTGATACAACAAAGAATCGTTTTTTGGCTGCTGGTGATGATTTTTCCATCAAGTTCTGGGATATGGACAGTGTTCAACTTTTGA CAACAATTGATGCTGATGGAGGCCTCCCAGCGAGCCCACGTATCCGCTTCAACAAGGAGGGCACCCTGTTGGCTGTTTCTGCCAATGATAATGGGATTAA AATATTGGCAAATTCAGATGGCATCAGGTTGCTGCGTACATTTGAAAATCTTTCTTATGATGCCTCTCGAGCATCTGAATCAGTTGCAAAGCCTACTGTT AATCCAATCTCAGCTGCAGCAGCAGCAGCTGCAACTAGCAGTGGACTTGCAGACAGGGGTGCCTCTGTGGTCGCCGTTGCTGGAATGAACGGAGATGCGC GGAATTTGGGAGATGTGAAACCTAGAATAGCTGAAGAATTGAATGATAAATCAAAGATATGGAAGCTCACTGAAATCAATGAACCATCTCAATGCCGGTC CTTGAGGCTTCCTGAAAACTTGAGAGTAACCAAGATATCAAGGTTAATTTATACAAATTCTGGCAATGCCATTTTGGCATTAGCTTCAAATGCAATACAC TTGTTATGGAAATGGCAACGCAGTGATCGTAATGCAAGTGGCAAGGCAACCGCTGGTGTGCCACCTCAATTATGGCAACCATCAAGTGGGATTCTAATGA CCAACGACATCACTGACTCTAACCCTGAAGAGGCTGTGGCATGTTTTGCTTTGTCCAAAAATGATTCTTATGTTATGTCAGCATCTGGAGGAAAGATTTC CCTTTTCAATATGATGACATTTAAGACAATGACAACTTTCATGCCACCACCTCCTGCAGCAACATTTCTTGCTTTTCATCCTCAAGATAACAACATAATT GCTATTGGCATGGATGATTCCACAATTCAAATATATAATGTCCGTGTAGACGAGGTCAAGAGCAAGCTGAAAGGCCACTCTAAAAGAATAACTGGCCTTG CCTTCTCCCATGTGCTGAGCGTGCTAGTGTCATCGGGAGCAGATGCTCAGCTTTGTGTTTGGAACTCGGACGGATGGGAAAAGCAGAAAACAAGATTCTT GCAGGTTCCGACTGGAAGGACAACAACAGCACAATCGGACACCCGTGTACAATTTCATCAGGATCAGATACACTTCCTGGTTGTGCACGAGACTCAGCTT GCCATATTTGAAACCACAAAGCTAGAATGCGTAAAGCAGTGGCTTCCACGTGAATCTTCTGCACCAATCTCACATGCTGTGTTCTCATGTGATAGTCAGC TGGTATATGCCAGCTTCTTAGATGCAACTGTTTGTGTATTTAGTGCTGCAAATCTCAGATTACGCTGTCGTATCAATCCTTCTTCATATCCCCCACCTAA TGTCAGCTCAAATGTCCACCCACTTGTGATTGCTGCACACCCGCAAGAACCAAATCAGTTTGCATTGGGATTATCAGATGGTGGGGTTCATGTCTTTGAG CCACTTGAATCTGAAGGAAAATGGGGTGTGCCTCCACCTGCTGAGAATGGGTCAGCAAGCAGTGTGGCAGCTATTCCTTCAGTTGGACCATCAGGTTCTG ATCAAGCCCAGAGATGA
AA sequence Show only first row Show all	>Potri.003G030000.2 pacid=42787148 polypeptide=Potri.003G030000.2.p locus=Potri.003G030000 ID=Potri.003G030000.2.v4.1 annot-version=v4.1 MSSLSRELVFLILQFLDEEKFKETVHKLEQESGFFFNMKYFEDEVHNGNWDEVEKYLSGFTKVDDNRYSMKIFFEIRKQKYLEALDKHDRSKAVEILVKD LKVFSTFNEELFKEITQLLTLENFRENEQLSKYGDTKSARAIMLVELKKLIEANPLFRDKLQFPNLKNSRLRTLINQSLNWQHQLCKTPRSNPDIKTLFF DHSCGQPNGARAPSPANNPLLGSLPKAGGFPPLGAHGPFQPTPAPVPAPLAGWMSNPPTVTHPAVSGGGAIGLGAPSISAALKHPRTPPSNPSVDYPSGD PDHVAKRTRPMGISDEVNLPVNVLPMSFPGHGHGHGQTFNAPDDLPKAVVRTLNQGSSPMSMDFHPVQQTILLVGTNVGEIGLWEVGSRERLVLRNFKVW DLNACSMPLQAALVKDPGVSVNRVIWSPDGNLFGVAYSRHIVQIYSYHGNDDVRQHLEIDAHVGGVNDLAFSTPNKQLCVITCGDDKIIKVWDAATGAKQ YTFEGHEAPVYSICPHYKENIQFIFSTALDGKIKAWLYDNLGSRVDYEAPGRWCTTMAYSADGTRLFSCGTSKDGESYIVEWNESEGAVKRTYVGFRKHS LGVVQFDTTKNRFLAAGDDFSIKFWDMDSVQLLTTIDADGGLPASPRIRFNKEGTLLAVSANDNGIKILANSDGIRLLRTFENLSYDASRASESVAKPTV NPISAAAAAAATSSGLADRGASVVAVAGMNGDARNLGDVKPRIAEELNDKSKIWKLTEINEPSQCRSLRLPENLRVTKISRLIYTNSGNAILALASNAIH LLWKWQRSDRNASGKATAGVPPQLWQPSSGILMTNDITDSNPEEAVACFALSKNDSYVMSASGGKISLFNMMTFKTMTTFMPPPPAATFLAFHPQDNNII AIGMDDSTIQIYNVRVDEVKSKLKGHSKRITGLAFSHVLSVLVSSGADAQLCVWNSDGWEKQKTRFLQVPTGRTTTAQSDTRVQFHQDQIHFLVVHETQL AIFETTKLECVKQWLPRESSAPISHAVFSCDSQLVYASFLDATVCVFSAANLRLRCRINPSSYPPPNVSSNVHPLVIAAHPQEPNQFALGLSDGGVHVFE PLESEGKWGVPPPAENGSASSVAAIPSVGPSGSDQAQR

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT1G80490		TPR1	TOPLESS-related 1 (.1.2)		Potri.003G030000 [exp]	0	1
AT3G14980			Acyl-CoA N-acyltransferase wit...		Potri.001G392801 [exp]	2.82	0.8074
AT2G34680		AIR9	AUXIN-INDUCED IN ROOT CULTURES...		Potri.001G357700 [exp]	7.34	0.7622
AT1G48410		AGO1	ARGONAUTE 1, Stabilizer of iro...		Potri.015G029000 [exp]	7.87	0.7375
AT1G55350		EMB80, ATDEK1, ...	EMBRYO DEFECTIVE 80, embryo de...		Potri.001G003900 [exp]	10.53	0.7894
AT2G30480			unknown protein		Potri.013G157800 [exp]	14.28	0.7975
AT5G47020			unknown protein		Potri.003G086200 [exp]	14.83	0.7581
AT5G53430		SET29, ATX5, SD...	SET domain group 29 (.1)		Potri.012G013900 [exp]	16.43	0.7601	SDG914
AT1G16970		KU70, ATKU70	ARABIDOPSIS THALIANA KU70 HOMO...		Potri.011G107400 [exp]	19.44	0.7473	Pt-KU70.1
AT1G55350		EMB80, ATDEK1, ...	EMBRYO DEFECTIVE 80, embryo de...		Potri.003G221100 [exp]	21.49	0.7652
AT1G15240			Phox-associated domain;Phox-li...		Potri.001G183100 [exp]	21.49	0.7340

Compare expression of checked genes

Potri.003G030000 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.