Plant FIBer expression Database

Potri.003G030200 [POPLAR]


External link
JGI Phytozome v13PopgenieAspWood                  
Symbol
Arabidopsis homologues

No hit found

Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Flax homologues

No hit found
PFAM info
Representative CDS sequence
>Potri.003G030200.4 pacid=42785130 polypeptide=Potri.003G030200.4.p locus=Potri.003G030200 ID=Potri.003G030200.4.v4.1 annot-version=v4.1
ATGTTCTCGGTGTTTTCGAGCATGGAAACTGTGTCAGGTAATGAACAATGGTCTTCTGATCAACTTGGTGCTGAGAATTTGTATGCCTTGCAAAAACTTG
GAGGAATTCTGCATTGCAATAAGATGAAGATCGCAGCACTCGAGTTACAGAGTTTTTCCTCGCCAAAAAACCTTTCATTTTCCAAGCTTCTGGAGAGCCC
TGCAAGTATTTGTAAGCATAAAGCTGGTGATGGACTGAGGTTTTTGGATGAGATTGGAAAAGATTTCAGAGGTACAGATGCAATGGAAGAACAGAGAAGA
GAAATGCATAGGTTGATGAATGGAAAGAACCTGCTAACAGAATCAAGGGCCTCGAGTTCAAACGAGCTAGTGGAAATATCGCCAACGAATTCTTCAAGAG
ATCAAGCTTGCGGTGATTCTTCTGAAGGCAAACAACTGAAACAAGTTTCAGAGGCTGGTAAGATCAAGCAGCTAAGTAAGCGATTGAAGACACTTGAAGA
AGAAACTGAACCTATGAAGCAAGAGTTTTTCCAGCACATGGAAGAAAGAAAAAAACTGGTGGCTGAAATATACCAGCAGTTTCAGACAATACACCATTGT
CTCCAATTTGAAAATCAAGAACTTGAAGAGGGATCACCTGATGATGGATCTTCGATTGTCGAATATCTCAAGAAAGCAGGATTGGGACTGGCAGGTCAGA
AGTCCTGTACTGATAGTTATCAAGTCCATGCATTGTCTGAAGAGGACATGGAAAGACTAATAAGGTGGCTGCAAGAAGCTGCTGATGCAGAATCAGAACG
CATTGCTTTCAAAACATTGAATGAGAGGGCTGTCTAA
AA sequence
>Potri.003G030200.4 pacid=42785130 polypeptide=Potri.003G030200.4.p locus=Potri.003G030200 ID=Potri.003G030200.4.v4.1 annot-version=v4.1
MFSVFSSMETVSGNEQWSSDQLGAENLYALQKLGGILHCNKMKIAALELQSFSSPKNLSFSKLLESPASICKHKAGDGLRFLDEIGKDFRGTDAMEEQRR
EMHRLMNGKNLLTESRASSSNELVEISPTNSSRDQACGDSSEGKQLKQVSEAGKIKQLSKRLKTLEEETEPMKQEFFQHMEERKKLVAEIYQQFQTIHHC
LQFENQELEEGSPDDGSSIVEYLKKAGLGLAGQKSCTDSYQVHALSEEDMERLIRWLQEAADAESERIAFKTLNERAV

DESeq2's median of ratios [POPLAR]

Mapped by: Order by: Show schematic diagram

Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol NWA:WTNWB:WTNWA:OE-ARK2NWB:OE-ARK2NWA:miRNA-ARK2NWB:miRNA-ARK2NW 0hrWT H20WT-NWTUA1dEY NWTUA1dEY+TUB15 NWTUA1dY+TUB9 NWPde NWNWA:WT GANWBWT GATW:WTTW:WT GANWA:OE-ARK2 GANWB:OE-ARK2 GATW:OE-ARK2TW:OE-ARK2 GANWA:miRNA-ARK2 GANWB:miRNA-ARK2 GATW:miRNA-ARK2TW:miRNA-ARK2 GATW 2hrTW 8hrTW 24hrTW 48hrTW 96hrTW 336hrWT ACC35S::etr1-1 H2035S::etr1-1 ACCLMX5::etr1-1 H20LMX5::etr1-1 ACCWT-TWTUA1dEY TWTUA1dEY+TUB15 TWTUA1dY+TUB9 TWPde TWOW:WTOW:WT GAOW:OE-ARK2OW:OE-ARK2 GAOW:miRNA-ARK2OW:miRNA-ARK2 GAOW 2hrOW 8hrOW 24hrOW 48hrOW 96hrOW 336hrRoot CTRRoot LongColdRoot LongDrougtRoot LongHeatRoot LongSaltRoot ShortColdRoot ShortDrougtRoot ShortHeatRoot ShortSaltPtr rootLeaf CTRLeaf LongColdLeaf LongDrougtLeaf LongHeatLeaf LongSaltLeaf ShortColdLeaf ShortDrougtLeaf ShortHeatLeaf ShortSaltPtr leafStem CTRStem LongColdStem LongDrougtStem LongHeatStem LongSaltStem ShortColdStem ShortDrougtStem ShortHeatStem ShortSaltPtr shootPtr xylemPtr phloemPtr fiberPtr vesselPtr fiber vessel ray
Potri.003G030200
[exp]
0 1
AT5G41470 Nuclear transport factor 2 (NT... Potri.003G131500
[exp]
15.77 0.8669
AT5G03990 unknown protein Potri.006G045900
[exp]
22.27 0.8612
AT1G16810 unknown protein Potri.005G174400
[exp]
31.04 0.8536
AT4G00755 F-box family protein (.1.2) Potri.002G153900
[exp]
40.09 0.7745
AT1G21270 WAK2 wall-associated kinase 2 (.1) Potri.009G155050
[exp]
41.91 0.8375
AT5G08391 Protein of unknown function (D... Potri.017G064301
[exp]
44.29 0.8347
AT2G30070 ATKUP1, ATKT1P,... POTASSIUM UPTAKE TRANSPORTER 1... Potri.008G140800
[exp]
44.98 0.8314
AT4G27745 Yippee family putative zinc-bi... Potri.001G085400
[exp]
46.21 0.7563
AT5G59845 Gibberellin-regulated family p... Potri.014G020100
[exp]
47.74 0.7806
AT3G14200 Chaperone DnaJ-domain superfam... Potri.001G164700
[exp]
51.38 0.8002

Potri.003G030200 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.