Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G18430 296 / 5e-104 Calcium-binding EF-hand family protein (.1.2) AT3G51920 60 / 1e-11 CML9, CAM9, ATCML9 CALMODULIN LIKE PROTEIN 9, calmodulin 9 (.1) AT3G22930 58 / 1e-10 CML11 calmodulin-like 11 (.1) AT4G14640 54 / 3e-09 CAM8, AtCML8 calmodulin-like 8, calmodulin 8 (.1) AT1G24620 44 / 1e-05 EF hand calcium-binding protein family (.1) AT5G47100 44 / 2e-05 ATCBL9, CBL9 calcineurin B-like protein 9 (.1) AT4G17615 43 / 2e-05 ATCBL1, SCABP5, CBL1 SOS3-LIKE CALCIUM BINDING PROTEIN 5, ARABIDOPSIS THALIANA CALCINEURIN B-LIKE PROTEIN, calcineurin B-like protein 1 (.1.2) AT5G37770 42 / 6e-05 CML24, TCH2 TOUCH 2, CALMODULIN-LIKE 24, EF hand calcium-binding protein family (.1) AT2G41090 42 / 6e-05 Calcium-binding EF-hand family protein (.1) AT5G17470 41 / 9e-05 EF hand calcium-binding protein family (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.018G103600 [exp] 269 / 2e-93 AT3G18430 264 / 2e-91 Calcium-binding EF-hand family protein (.1.2) Potri.010G080900 [exp] 62 / 1e-12 AT4G14640 270 / 2e-94 calmodulin-like 8, calmodulin 8 (.1) Potri.005G215700 [exp] 51 / 2e-08 AT3G22930 200 / 8e-67 calmodulin-like 11 (.1) Potri.003G084200 [exp] 41 / 0.0001 AT5G47100 375 / 2e-134 calcineurin B-like protein 9 (.1) Potri.001G150200 [exp] 40 / 0.0004 AT5G47100 367 / 6e-131 calcineurin B-like protein 9 (.1) Potri.009G102500 [exp] 39 / 0.0006 AT2G15680 246 / 3e-84 calmodulin-like 30, Calcium-binding EF-hand family protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10029670 [exp] 299 / 3e-105 AT3G18430 277 / 1e-96 Calcium-binding EF-hand family protein (.1.2) Lus10042708 [exp] 293 / 9e-103 AT3G18430 271 / 4e-94 Calcium-binding EF-hand family protein (.1.2) Lus10010775 [exp] 276 / 3e-96 AT3G18430 273 / 6e-95 Calcium-binding EF-hand family protein (.1.2) Lus10022173 [exp] 251 / 2e-86 AT3G18430 257 / 6e-89 Calcium-binding EF-hand family protein (.1.2) Lus10001775 [exp] 49 / 1e-07 AT2G27030 192 / 1e-63 calmodulin 5 (.1.2.3) Lus10024830 [exp] 47 / 1e-06 AT4G14640 176 / 2e-57 calmodulin-like 8, calmodulin 8 (.1) Lus10019349 [exp] 47 / 2e-06 AT4G37000 289 / 4e-94 ARABIDOPSIS THALIANA RED CHLOROPHYLL CATABOLITE REDUCTASE, accelerated cell death 2 (ACD2) (.1) Lus10009353 [exp] 46 / 3e-06 AT3G50360 248 / 5e-84 CENTRIN 1, centrin2 (.1) Lus10011028 [exp] 42 / 9e-05 AT4G17615 359 / 5e-128 SOS3-LIKE CALCIUM BINDING PROTEIN 5, ARABIDOPSIS THALIANA CALCINEURIN B-LIKE PROTEIN, calcineurin B-like protein 1 (.1.2) Lus10000972 [exp] 39 / 0.0005 AT1G21550 128 / 3e-38 Calcium-binding EF-hand family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0220 [poplar] [flax] EF_hand PF13499 [poplar] [flax] EF-hand_7 EF-hand domain pair
Representative CDS sequence Show only first row Show all	>Potri.003G030300.3 pacid=42787475 polypeptide=Potri.003G030300.3.p locus=Potri.003G030300 ID=Potri.003G030300.3.v4.1 annot-version=v4.1 ATGGGGACAGCCTCGTCAATGCTAACTCAGTACGACTTAGAAGAGGTTCAACTACACTGCCATAATCTATTCTCCCAGCAAGAAATAGTGTCACTGTATC AAAGGTTTTGCCAGCTAGATCGAAATGCAAAGGGGTTTATCTCAGCTGATGAATTCTTATCAGTGCCTGAGTTTGCAATGAATCCACTCTCTCAGAGGCT GCTTAAAATGGTTGATGGCTTGAACTTCAAGGACTTCGTTGCCTTCTTATCTGCTTTCTCTGCTAAAGCAAATATGGAGCAGAAAATCGCACTTATTTTC AAAGTATATGACTCGGATGGGAATGGAAAAATATCTTTCAACGACATACTAGAAGTTCTTCAGGATTTATCTGGTGTGTTCATGTCCAATGAGCAAAGAG AGAAAGTCTTGATCCAAGTTTTGAAGGAGGCGGGTTACACAAGGGAATCATACTTAATGCTGGATGACTTCATTAAGGTTTTTGGAAATTCTGGCCTAAA ACTGGAGGTCGAAGTCCCAGTTGACTGA
AA sequence Show only first row Show all	>Potri.003G030300.3 pacid=42787475 polypeptide=Potri.003G030300.3.p locus=Potri.003G030300 ID=Potri.003G030300.3.v4.1 annot-version=v4.1 MGTASSMLTQYDLEEVQLHCHNLFSQQEIVSLYQRFCQLDRNAKGFISADEFLSVPEFAMNPLSQRLLKMVDGLNFKDFVAFLSAFSAKANMEQKIALIF KVYDSDGNGKISFNDILEVLQDLSGVFMSNEQREKVLIQVLKEAGYTRESYLMLDDFIKVFGNSGLKLEVEVPVD

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT3G18430			Calcium-binding EF-hand family...		Potri.003G030300 [exp]	0	1
AT5G51970			GroES-like zinc-binding alcoho...		Potri.012G135000 [exp]	8.00	0.8766
AT3G06350		EMB3004, MEE32	MATERNAL EFFECT EMBRYO ARREST ...		Potri.013G029900 [exp]	14.59	0.8808	DHQD3
AT1G15670			Galactose oxidase/kelch repeat...		Potri.006G196900 [exp]	18.43	0.8716
AT5G05280			RING/U-box superfamily protein...		Potri.001G159300 [exp]	20.49	0.8147
AT5G19670			Exostosin family protein (.1)		Potri.018G085500 [exp]	22.97	0.8627
AT3G05327			Cyclin family protein (.1)		Potri.013G023000 [exp]	26.26	0.8532
AT2G47020			Peptide chain release factor 1...		Potri.002G188200 [exp]	37.81	0.8671
AT5G63710			Leucine-rich repeat protein ki...		Potri.019G001800 [exp]	38.15	0.8527
AT5G52120		ATPP2-A14	phloem protein 2-A14 (.1)		Potri.012G136200 [exp]	59.51	0.8365
AT4G14270			unknown protein		Potri.008G074600 [exp]	73.56	0.8185

Compare expression of checked genes

Potri.003G030300 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.