Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G49390 321 / 1e-108 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1) AT5G20400 310 / 2e-104 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1) AT5G54000 302 / 4e-101 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1) AT5G20550 301 / 1e-100 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1) AT1G17020 210 / 3e-65 ATSRG1, SRG1 senescence-related gene 1 (.1) AT2G38240 207 / 3e-64 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1) AT1G17010 206 / 1e-63 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1) AT4G25300 202 / 5e-62 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1), 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.2) AT4G10500 198 / 1e-60 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1) AT1G78550 197 / 4e-60 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.003G030500 [exp] 686 / 0 AT1G49390 321 / 1e-108 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1) Potri.003G030400 [exp] 634 / 0 AT1G49390 320 / 2e-108 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1) Potri.018G121700 [exp] 359 / 2e-123 AT5G20400 426 / 8e-150 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1) Potri.006G062500 [exp] 355 / 8e-122 AT5G20400 432 / 2e-152 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1) Potri.018G121800 [exp] 349 / 1e-119 AT5G54000 407 / 2e-142 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1) Potri.010G023600 [exp] 209 / 1e-64 AT3G21420 511 / 0.0 LATERAL BRANCHING OXIDOREDUCTASE 1, 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1) Potri.006G101100 [exp] 200 / 2e-61 AT5G05600 462 / 1e-163 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1) Potri.001G355100 [exp] 200 / 2e-61 AT1G17020 439 / 1e-154 senescence-related gene 1 (.1) Potri.001G381700 [exp] 199 / 9e-61 AT1G17020 436 / 2e-153 senescence-related gene 1 (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10008824 [exp] 316 / 1e-106 AT1G49390 410 / 2e-143 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1) Lus10039975 [exp] 283 / 7e-94 AT1G49390 309 / 5e-104 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1) Lus10008826 [exp] 269 / 3e-88 AT1G49390 298 / 1e-99 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1) Lus10006518 [exp] 214 / 2e-66 AT3G21420 523 / 0.0 LATERAL BRANCHING OXIDOREDUCTASE 1, 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1) Lus10030995 [exp] 206 / 3e-63 AT1G17020 339 / 2e-115 senescence-related gene 1 (.1) Lus10026173 [exp] 206 / 4e-63 AT1G17020 443 / 5e-156 senescence-related gene 1 (.1) Lus10028068 [exp] 201 / 6e-62 AT5G08640 429 / 1e-151 flavonol synthase 1 (.1.2) Lus10011980 [exp] 200 / 2e-61 AT1G17020 382 / 1e-132 senescence-related gene 1 (.1) Lus10030934 [exp] 200 / 3e-61 AT1G17020 337 / 2e-114 senescence-related gene 1 (.1) Lus10022292 [exp] 199 / 8e-61 AT1G17020 449 / 5e-159 senescence-related gene 1 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0029 [poplar] [flax] Cupin PF03171 [poplar] [flax] 2OG-FeII_Oxy 2OG-Fe(II) oxygenase superfamily CL0029 [poplar] [flax] Cupin PF14226 [poplar] [flax] DIOX_N non-haem dioxygenase in morphine synthesis N-terminal
Representative CDS sequence Show only first row Show all	>Potri.003G030451.1 pacid=42787344 polypeptide=Potri.003G030451.1.p locus=Potri.003G030451 ID=Potri.003G030451.1.v4.1 annot-version=v4.1 ATGGCTGGAGTTTCAGCTCTCCCTGCAAAGATTTTACTATCAAAGCGTGTTCAGGAAATGGTCCTCAACGATGAAGAACTACAAAAGCCATACATCAGTA GAAATGATGGCACTAATGAAGCAATTCCCCGTCCCCCATCTGATCTGATTCCGATCATAGACCTCAGCCTCCTCTCTTCTTCAGAGCCATGCTCTGCACA AGAACTGCAGCGGCTTAGATCAGCTCTTTGTTCATGGGGCTGCTTTCAGGCAACAGGTCACGGTATTCCAAAATCATTTCTTGATAAGATTCGCCAAGTA GCAAGGGATTTCTTCGAGCAGCCAATGGAGGAGAAGAAAAGGCATGCTAAAGGAGTGGAAGAGTTTGAAGGATATGGAGCTGATCCTGTCCCAGCAGAAG GACAGTCGCTTGACTGGTCTGATCGCTTATTTCTTAACGTATACCCAGAAGATCGAAGGAAGCATAAGTTTTGGCCGGAGAATCCAAAATCATTCAGAGA GGTTTTAGAAGAATACACTTCTCGGATGCAAATATTCACAGAGCTTGTCTCAAAAGCTATGGCAAAGTCATTGAACTTGGAAGCAGATTGCTTCCTGAAT CAGTTTGGCAAACAAGCAACACTAAAAGCAAGGTTCAACTACTACTCACCGTGTCAGAGGCCTGATCTTGTTCTAGGTTTGAGAGCCCATGCAGATGGAT CAGGGTACACCATTATCTTGCAAGACGATGTAGAAGGTCTTCAGGTCTTCAAAGATGAGCGATGGTTCACAGTTCCTGCAATTTCTGATGCTCTCCTAGT ACTCATGGGTGATCAAATGGAGATAATGACCAATGGGGTGTTCAAGAGCCCAGTTCATAGAGTTTTGACCACCTCAGAGAAGGAGAGGATTTCTGTGGCT GTCTTCTACGCACCTGAACCAAATAAAGAGATTGGACCAGAAGAAGGTTTGATCAATGAGGAAAGAAAACAAATATACAAGAAAGTGAAAGAGTATTCTG TTGTGCACTGGGAACACTACCAGCAAGGAAAGAGGGCAATTCATGTGGCAAAAGTTTAG
AA sequence Show only first row Show all	>Potri.003G030451.1 pacid=42787344 polypeptide=Potri.003G030451.1.p locus=Potri.003G030451 ID=Potri.003G030451.1.v4.1 annot-version=v4.1 MAGVSALPAKILLSKRVQEMVLNDEELQKPYISRNDGTNEAIPRPPSDLIPIIDLSLLSSSEPCSAQELQRLRSALCSWGCFQATGHGIPKSFLDKIRQV ARDFFEQPMEEKKRHAKGVEEFEGYGADPVPAEGQSLDWSDRLFLNVYPEDRRKHKFWPENPKSFREVLEEYTSRMQIFTELVSKAMAKSLNLEADCFLN QFGKQATLKARFNYYSPCQRPDLVLGLRAHADGSGYTIILQDDVEGLQVFKDERWFTVPAISDALLVLMGDQMEIMTNGVFKSPVHRVLTTSEKERISVA VFYAPEPNKEIGPEEGLINEERKQIYKKVKEYSVVHWEHYQQGKRAIHVAKV

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT1G49390			2-oxoglutarate (2OG) and Fe(II...		Potri.003G030451 [exp]	0	1
AT1G49390			2-oxoglutarate (2OG) and Fe(II...		Potri.003G030500 [exp]	1.00	0.9268
AT5G43630		TZP	zinc knuckle (CCHC-type) famil...		Potri.010G076700 [exp]	10.95	0.8027
AT5G59250			Major facilitator superfamily ...		Potri.001G244100 [exp]	18.81	0.7963
AT1G55090			carbon-nitrogen hydrolase fami...		Potri.001G087400 [exp]	28.98	0.7509
AT5G42810		ATIPK1	inositol-pentakisphosphate 2-k...		Potri.002G032900 [exp]	31.22	0.7221
AT5G24930	CO	COL4, ATCOL4	CONSTANS-like 4 (.1)		Potri.006G267700 [exp]	36.44	0.7741	Pt-COL1.1
AT4G32440			Plant Tudor-like RNA-binding p...		Potri.006G250600 [exp]	58.77	0.7001
AT3G55850		LAF3 ISF2, LAF3...	LAF3 ISOFORM 2, LONG AFTER FAR...		Potri.003G196300 [exp]	120.59	0.7227	Pt-LAF3.1
AT5G16530		PIN5	PIN-FORMED 5, Auxin efflux car...		Potri.013G087000 [exp]	164.37	0.6926	PIN9.2
AT3G03770			Leucine-rich repeat protein ki...		Potri.019G039000 [exp]	179.19	0.7052

Compare expression of checked genes

Potri.003G030451 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.