Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G59310 264 / 9e-87 Eukaryotic protein of unknown function (DUF914) (.1), Eukaryotic protein of unknown function (DUF914) (.2) AT3G59340 252 / 7e-82 Eukaryotic protein of unknown function (DUF914) (.1) AT3G59320 235 / 3e-75 Eukaryotic protein of unknown function (DUF914) (.1), Eukaryotic protein of unknown function (DUF914) (.2) AT3G59330 122 / 1e-32 Eukaryotic protein of unknown function (DUF914) (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.002G230600 [exp] 256 / 7e-83 AT3G59310 436 / 8e-154 Eukaryotic protein of unknown function (DUF914) (.1), Eukaryotic protein of unknown function (DUF914) (.2) Potri.014G151800 [exp] 253 / 6e-82 AT3G59310 417 / 3e-146 Eukaryotic protein of unknown function (DUF914) (.1), Eukaryotic protein of unknown function (DUF914) (.2)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10004060 [exp] 360 / 4e-124 AT3G59310 305 / 5e-103 Eukaryotic protein of unknown function (DUF914) (.1), Eukaryotic protein of unknown function (DUF914) (.2) Lus10003247 [exp] 311 / 6e-105 AT3G59310 256 / 1e-83 Eukaryotic protein of unknown function (DUF914) (.1), Eukaryotic protein of unknown function (DUF914) (.2) Lus10026744 [exp] 267 / 1e-87 AT3G59310 451 / 4e-160 Eukaryotic protein of unknown function (DUF914) (.1), Eukaryotic protein of unknown function (DUF914) (.2) Lus10025530 [exp] 160 / 5e-46 AT3G59310 432 / 7e-152 Eukaryotic protein of unknown function (DUF914) (.1), Eukaryotic protein of unknown function (DUF914) (.2) Lus10002279 [exp] 125 / 1e-33 AT3G59330 111 / 2e-28 Eukaryotic protein of unknown function (DUF914) (.1) Lus10013357 [exp] 52 / 5e-07 AT1G08420 1713 / 0.0 BRI1 suppressor 1 (BSU1)-like 2 (.1), BRI1 suppressor 1 (BSU1)-like 2 (.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0184 [poplar] [flax] DMT PF06027 [poplar] [flax] SLC35F Solute carrier family 35
Representative CDS sequence Show only first row Show all	>Potri.003G030800.3 pacid=42785680 polypeptide=Potri.003G030800.3.p locus=Potri.003G030800 ID=Potri.003G030800.3.v4.1 annot-version=v4.1 ATGAGCTGCTTGTATGAAATTAACAGGTGGTGGAGAAGCCACGTAAATCTGTGGACACTGTACTTACTGTTCCTAGGTCAGATGGTGTCTTTTGTGCTTG CAATGGGCAGCATCACTTCTTCTCTAGTAGCCAGTCTTGGTGTTGACGCGCCCCTTACACAATCATCCTTCAATTACTTGGCCTTAGCTTTGATTTATGG CAGCATATTGCTGTACAGGCGCCAAAAACTACAGGTTTCTTGGTACTGGTATCTCCTTCTAGGCTTCGTTGATGTTCAAGGAAATTATCTTGTTAACAAA GCATACCAGTTCTCATCAATAACTAGCGTGACATTATTGGACTGCTGGACAGTAGCATGGGTTATAGCTCTCACTTGGTTCTTTCTGGGAACTCGCTATA CCTTATGGCAGCTGCTTGGTGCTGCCGTCTGCGTATTAGGGCTTGGTTTAGTGCTCCTCTCCGATGCCGGGGTGGGTGGAGGAGGTGGTTCAAAGCCCGT TTTAGGTGATTTCCTTGTTATTGCTGGGACAATTTTCTTTGCCTTGAGCAATGTTGGTGAGGAATTCTGCGTGAAGAAAAAAGGTCGTGTTGAAGTGGTG GCAATGATCGGTGTTTATGGATTCCTAGTGAGTGCAGTTGAGTTATCTATAGTGGAGCTAAAGAGTTTGGAAGCAGTCGCCTGGTCTAAAGATATTGTAT TTGCCATTGCTGGCTACACTCTATCCATGTTCTTATTCTATTCTCTCGCTCCCTTCGTTCTAAAGTTAAGTGGAGCCACAATGTTCAACCTGTCTATTCT CACAGCCGACATGTGGGCTGTCGTTTTCCGTGTCTTTTTCTACCACCAACAGGTTGATTGGTTATACTTTCTTTCTTTTGCAATTGTAGCGATTGGATTA ATCATTTACTCCTTAACGGAGGAGGGGGAGCGAGGTTCTTCGCCAGCTCCGCCGGACGGGGATTCCAATGCAGAATACCAAGTGCTTCATGAAAATGCAG AAGTGGGGCTATGA
AA sequence Show only first row Show all	>Potri.003G030800.3 pacid=42785680 polypeptide=Potri.003G030800.3.p locus=Potri.003G030800 ID=Potri.003G030800.3.v4.1 annot-version=v4.1 MSCLYEINRWWRSHVNLWTLYLLFLGQMVSFVLAMGSITSSLVASLGVDAPLTQSSFNYLALALIYGSILLYRRQKLQVSWYWYLLLGFVDVQGNYLVNK AYQFSSITSVTLLDCWTVAWVIALTWFFLGTRYTLWQLLGAAVCVLGLGLVLLSDAGVGGGGGSKPVLGDFLVIAGTIFFALSNVGEEFCVKKKGRVEVV AMIGVYGFLVSAVELSIVELKSLEAVAWSKDIVFAIAGYTLSMFLFYSLAPFVLKLSGATMFNLSILTADMWAVVFRVFFYHQQVDWLYFLSFAIVAIGL IIYSLTEEGERGSSPAPPDGDSNAEYQVLHENAEVGL

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT3G59310			Eukaryotic protein of unknown ...		Potri.003G030800 [exp]	0	1
AT5G01450			RING/U-box superfamily protein...		Potri.014G020900 [exp]	3.16	0.8991
AT3G59030		ATTT12, TT12	TRANSPARENT TESTA 12, A. THALI...		Potri.005G207500 [exp]	4.89	0.8981
AT4G18160		KCO6, ATTPK3, A...	Ca2+ activated outward rectify...		Potri.002G059200 [exp]	6.00	0.8853
					Potri.013G032000 [exp]	6.70	0.8462
AT5G13930		ATCHS, TT4, CHS	TRANSPARENT TESTA 4, CHALCONE ...		Potri.014G145100 [exp]	6.70	0.8888	Pt-CHS.7
AT1G69450			Early-responsive to dehydratio...		Potri.010G164100 [exp]	8.06	0.8523
AT2G23910			NAD(P)-binding Rossmann-fold s...		Potri.001G140700 [exp]	8.12	0.8842
AT3G51240		TT6, F3'H, F3H	TRANSPARENT TESTA 6, flavanone...		Potri.005G113700 [exp]	8.36	0.8850
AT1G09850		XBCP3	xylem bark cysteine peptidase ...		Potri.004G057700 [exp]	8.48	0.8747
AT3G51240		TT6, F3'H, F3H	TRANSPARENT TESTA 6, flavanone...		Potri.005G113900 [exp]	10.95	0.8748

Compare expression of checked genes

Potri.003G030800 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.