Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol	Pt-NHO1.1
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G80460 833 / 0 GLI1, NHO1 nonhost resistance to P. s. phaseolicola 1, Actin-like ATPase superfamily protein (.1.2) AT4G30310 48 / 2e-05 FGGY family of carbohydrate kinase (.1.2.3)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.018G095700 [exp] 47 / 2e-05 AT4G30310 989 / 0.0 FGGY family of carbohydrate kinase (.1.2.3)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10035914 [exp] 860 / 0 AT1G80460 845 / 0.0 nonhost resistance to P. s. phaseolicola 1, Actin-like ATPase superfamily protein (.1.2) Lus10025750 [exp] 773 / 0 AT1G80460 760 / 0.0 nonhost resistance to P. s. phaseolicola 1, Actin-like ATPase superfamily protein (.1.2) Lus10006975 [exp] 64 / 2e-10 AT4G30310 927 / 0.0 FGGY family of carbohydrate kinase (.1.2.3) Lus10001312 [exp] 46 / 7e-05 AT4G30310 758 / 0.0 FGGY family of carbohydrate kinase (.1.2.3)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0108 [poplar] [flax] Actin_ATPase PF00370 [poplar] [flax] FGGY_N FGGY family of carbohydrate kinases, N-terminal domain CL0108 [poplar] [flax] Actin_ATPase PF02782 [poplar] [flax] FGGY_C FGGY family of carbohydrate kinases, C-terminal domain
Representative CDS sequence Show only first row Show all	>Potri.003G030900.1 pacid=42784556 polypeptide=Potri.003G030900.1.p locus=Potri.003G030900 ID=Potri.003G030900.1.v4.1 annot-version=v4.1 ATGGCGAAAACAAAGGAGGCTGCCTTCATTGGCTCCATTGATCAAGGCACAAGCAGCACCAGATTCATCATCTATGACCGTAACTCTCGCTGTGTTGGAT CTCACCAGGTTGAGTTCACCCAGCTCTATCCTCAAGCCGGATGGGTGGAGCATGACCCAATGGAAATACTGGAGAGTGTGAAGGTGTGCATGGCAAAGGC AGTGGACAATGCTTCGGCAGAGGGGCATAATGTGGACGCTGCTTTGAAGGCTATTGGTTTGACCAATCAGAGAGAAACTACTCTTGTTTGGAGCAAATCC ACTGGTCGTCCCCTCTATAATGCCATTGTTTGGATGGATGTTCGCACCACTTCTGTTTGCAGGAGGCTGGAGAAAGAAATGCCAGGAGGAAGGACTCATT TCGTTGAGACATGCGGATTGCCAATTAGCACTTATTTCAGTGCCATGAAGTTAATCTGGTTGATGGAAAATGTGGATGCGGTTAAAGAGGGTATCAAGAA GAAAGATGCTTTGTTTGGAACGGTAGATTCTTGGTTGATCTGGAATTTAACTGGCGGAGTAAAGGGTGGCTTGCATGTGACTGATGTCTCTAATGCATCT CGAACTATGCTCATGAATCTTAAGACTCTTGAATGGGATAAACCTACATTAGAAACCCTGAAAATCCCAGCTGAAATTCTTCCAAAAATTATCAGTAATT CTGAGATTATTGGAAAGATCACAGAGGGATGGCCGCTTGTTGGTTTCCCAATTGCTGGATGTCTTGGTGACCAACACGCTGCGATGGTTGGGCAAGCTTG TAAAAAGGGTGAGGCTAAGAGCACTTATGGAACTGGTGCTTTCATACTTCGCAACACGGGTGAGGAGGTGGTACATTCAACGCATGGGCTTCTAACCACC TTGGCATTTAAGCTTGGCTCAAAAGCGCCAGCAAACTATGCACTTGAAGGCTCAATTGCTATTGCTGGGGCTGCAGTTCAATGGCTCAGAGATAGTCTTG GAGTAATTAAAAGCGCGGGTGAAATCGAGGAACTGGCATCTCAGGTTGACACAACTGGTGGGGTTTATTTTGTTCCTGCCTTCAATGGATTGTTTGCTCC ATGGTGGCGTGATGATGCTCGTGGGGTTTGTATTGGGATCACAAGGTTTACAAGCAAGGCTCACATTGCTCGAGCTGTGCTTGAGAGCATGTGTTTTCAA GTGAAGGATGTGTTAGATTCAATGCATAAAGATGCCGCAGGTACTGAGGAGGAAGAATTCTTGCTTAGAGTGGATGGTGGTGCTACTGTCAACAACCTCT TGATGCAGATTCAGGCTGACTTGCTAGGGAGCCCTGTGGTGAGACCTGCTGATATTGAGACAACAGCCCTCGGAGCAGCCTATGCTGCTGGTTTAGCTGT CGGGGTTTGGACAGAAGAAGAGATTTTTGCTTCTGGAGAAAAGTCCAAGTCTGACACCACTTTCCGTCCCAAACTAAATGAGGAGCTGAGGAAGAAGAAG GTGGATTCGTGGTTCAAAGCTGTTGAAAGGACTTTTGACTTGGCTGATCTTTCCATTTGA
AA sequence Show only first row Show all	>Potri.003G030900.1 pacid=42784556 polypeptide=Potri.003G030900.1.p locus=Potri.003G030900 ID=Potri.003G030900.1.v4.1 annot-version=v4.1 MAKTKEAAFIGSIDQGTSSTRFIIYDRNSRCVGSHQVEFTQLYPQAGWVEHDPMEILESVKVCMAKAVDNASAEGHNVDAALKAIGLTNQRETTLVWSKS TGRPLYNAIVWMDVRTTSVCRRLEKEMPGGRTHFVETCGLPISTYFSAMKLIWLMENVDAVKEGIKKKDALFGTVDSWLIWNLTGGVKGGLHVTDVSNAS RTMLMNLKTLEWDKPTLETLKIPAEILPKIISNSEIIGKITEGWPLVGFPIAGCLGDQHAAMVGQACKKGEAKSTYGTGAFILRNTGEEVVHSTHGLLTT LAFKLGSKAPANYALEGSIAIAGAAVQWLRDSLGVIKSAGEIEELASQVDTTGGVYFVPAFNGLFAPWWRDDARGVCIGITRFTSKAHIARAVLESMCFQ VKDVLDSMHKDAAGTEEEEFLLRVDGGATVNNLLMQIQADLLGSPVVRPADIETTALGAAYAAGLAVGVWTEEEIFASGEKSKSDTTFRPKLNEELRKKK VDSWFKAVERTFDLADLSI

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT1G80460		GLI1, NHO1	nonhost resistance to P. s. ph...		Potri.003G030900 [exp]	0	1	Pt-NHO1.1
AT5G45540			Protein of unknown function (D...		Potri.007G123100 [exp]	4.12	0.8689
AT5G03150	C2H2ZnF	JKD	JACKDAW, C2H2-like zinc finger...		Potri.006G129300 [exp]	8.30	0.8321
AT5G52900		MAKR6	MEMBRANE-ASSOCIATED KINASE REG...		Potri.014G091500 [exp]	12.48	0.7698
AT3G47800			Galactose mutarotase-like supe...		Potri.017G080100 [exp]	13.34	0.8347
AT3G57800	bHLH	bHLH060	basic helix-loop-helix (bHLH) ...		Potri.006G057200 [exp]	14.14	0.8241
AT1G21830			unknown protein		Potri.005G177600 [exp]	15.49	0.8007
AT2G18790		OOP1, HY3, PHYB	OUT OF PHASE 1, phytochrome B ...		Potri.010G145900 [exp]	19.28	0.7858
AT1G35460	bHLH	bHLH080	basic helix-loop-helix (bHLH) ...		Potri.019G079900 [exp]	20.44	0.8016
AT1G35670		CPK11, ATCDPK2,...	calcium-dependent protein kina...		Potri.013G112500 [exp]	21.28	0.7290	Pt-CDPK2.4,CPK4
AT3G59420		ACR4	crinkly4 (.1)		Potri.007G128400 [exp]	24.08	0.8190	ACR4.3

Compare expression of checked genes

Potri.003G030900 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.