Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G15290 1523 / 0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT4G28080 1351 / 0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT1G01320 1228 / 0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1), Tetratricopeptide repeat (TPR)-like superfamily protein (.2) AT3G52140 254 / 3e-68 tetratricopeptide repeat (TPR)-containing protein (.1), tetratricopeptide repeat (TPR)-containing protein (.2), tetratricopeptide repeat (TPR)-containing protein (.3), tetratricopeptide repeat (TPR)-containing protein (.4)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.006G180100 [exp] 1375 / 0 AT4G28080 2109 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.018G102500 [exp] 1367 / 0 AT4G28080 2144 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.014G098600 [exp] 1129 / 0 AT1G01320 2036 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1), Tetratricopeptide repeat (TPR)-like superfamily protein (.2) Potri.002G170900 [exp] 1120 / 0 AT1G01320 2033 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1), Tetratricopeptide repeat (TPR)-like superfamily protein (.2) Potri.001G271200 [exp] 320 / 7e-89 AT3G52140 1842 / 0.0 tetratricopeptide repeat (TPR)-containing protein (.1), tetratricopeptide repeat (TPR)-containing protein (.2), tetratricopeptide repeat (TPR)-containing protein (.3), tetratricopeptide repeat (TPR)-containing protein (.4) Potri.009G065300 [exp] 315 / 2e-87 AT3G52140 1758 / 0.0 tetratricopeptide repeat (TPR)-containing protein (.1), tetratricopeptide repeat (TPR)-containing protein (.2), tetratricopeptide repeat (TPR)-containing protein (.3), tetratricopeptide repeat (TPR)-containing protein (.4)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10004009 [exp] 1219 / 0 AT1G01320 2014 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1), Tetratricopeptide repeat (TPR)-like superfamily protein (.2) Lus10035822 [exp] 1211 / 0 AT4G28080 2117 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10030259 [exp] 1090 / 0 AT1G01320 1731 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1), Tetratricopeptide repeat (TPR)-like superfamily protein (.2) Lus10036604 [exp] 820 / 0 AT4G28080 1357 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10037481 [exp] 301 / 5e-83 AT3G52140 1894 / 0.0 tetratricopeptide repeat (TPR)-containing protein (.1), tetratricopeptide repeat (TPR)-containing protein (.2), tetratricopeptide repeat (TPR)-containing protein (.3), tetratricopeptide repeat (TPR)-containing protein (.4) Lus10015708 [exp] 300 / 2e-82 AT3G52140 1874 / 0.0 tetratricopeptide repeat (TPR)-containing protein (.1), tetratricopeptide repeat (TPR)-containing protein (.2), tetratricopeptide repeat (TPR)-containing protein (.3), tetratricopeptide repeat (TPR)-containing protein (.4)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF12807 [poplar] [flax] eIF3_p135 Translation initiation factor eIF3 subunit 135 CL0020 [poplar] [flax] TPR PF13424 [poplar] [flax] TPR_12 Tetratricopeptide repeat CL0020 [poplar] [flax] PF15044 [poplar] [flax] CLU_N Mitochondrial function, CLU-N-term
Representative CDS sequence Show only first row Show all	>Potri.003G031000.4 pacid=42787321 polypeptide=Potri.003G031000.4.p locus=Potri.003G031000 ID=Potri.003G031000.4.v4.1 annot-version=v4.1 ATGGCGCCAAGGTCAGGGAGGGGGAAATCAAACAAAGCTAGAGCAGAGAGGAAAAGGAAGGAGGAGAAATCTGTTCCTAGTGTTGTTGATGTCACCGTAA TCACCCCATATGAATCGCAAGTTGTGCTCAAGGTGGTGCCACTACTCCTGGGCATCTCCACTGATAGGATACTTGATGTGAAGAAGTTATTGGCTGCAAG TGTGCAAACATGTCATCTCACAAACTATTCTTTATCTCACGAGGTGAAAGGGCATGGGTTGCATGACAGAGTAGAAATCATCTCCTTGAAGCCCTGCCTG CTCAAAATCATCGAAGAGGACTACACAGAGGAGTCACAAGCCGTAGCTCATGTACGGAGGCTGCTGGACATCGTAGCCTGCACAACCAGGTTCTCCAACA AATCCAGGCGACCGTCACAGTCAATATCACAATCCAAACGGTCTAATAGTTCTAGGTCTCCACGGACCAGTACTCCTGCAACGCCACTGTCCGACGATGC AGCATCCGAAACGACGTCGGTGTCGGCGGCGATGTCGGAGAGTATGGACATGGCGGCGATTCACCCGACGCCGAAGCTGTCTGAGTTTTATGACTTCTTC TCCTTTTCTCACCTCCCGCCTCCTATTCTCGATTTGAGACGATGCAGTGAGGTTAAGGATGGAGAGGAAAGGTCACGACCGGGTGATTATTTTGAATTTC AGGTTAAGATATGCAATGGAAAGCTAATAAAGGTGGTTGCTTCAGTAAAAGGCTTTTATGCAGTGGGAAAGCAATTTTCCCAAAGCCATTCCGTGGTGGA TCTTCTTCAAAATCTCAGCCGAGCTTTTGCCAATGCATATGATTCCCTTATGAAGGCTTTTGTAGAGCATAATAAGTTCGGTAATCTTCCTTACGGATTT CGTGCAAATACATGGCTTGTTCCTCCATCTGTTGCAGACTCTCCATCAAACTTTCCATCCCTTCCTGTAGAAGACGAGAGCTGGGGTGGCAATGGTGGAG GGCAAGGAAGATATGGTGGATATGATCTTCGACCTTGGGCCACTGATTTCGCGATATTGGCTAGCCTACCATGCAAGACAGAGGAGGAGAGAGTGGTGCG AGACCGGAAGGCCCTTTTGCTTCATAGTCAATTTGTTGATGTTTCAATTTTTAAAGCTGTTGGAGCGATACAAGGTGTTATTGATTCCAATCTTCAAGCA AGAGATACAATTTCAGGCTCTTTCTTGCTTGAAGATCATGTAGGAGACTTGTCCATAGTTGTAGAACGTGATGCAGCAGATGCAAGCTTGAAGACTGTGG TCAAAGTCAACGGCAATCACTTATCTGGTATCCCTGCTAAGGAAATTGCTCAAAGGAATTTGCTTAAAGGGGTAACCGCAGATGAGAGTGTAGTTGTTCA TGATACCTCTTCATTGAGCACTGTCATTGTAAGACTTTGTGGATACACTGCAACAGTGAAAGTTGTTGGCAATGTGAAGAAGAAAAAGTTTGATGCTCAA GATATTGAAATTGATGATCTACCAGATGGAGGAGCTAATGCTCTTAATATTAACAGTTTAAGGGTGCTGCTGCACAAGTGTTGCAGTGCTGAATCATCTC TAGGACAGTCTTCTCACTCTACTTTGGAAGAGTTAGAAGCATCTAGATGTCTTATTCGGAAAGTAATTAAAGAGAGTTTAACCAAGCAAGAGGAGAAGCC AATTGCTTCAGAAAGGTCTATTAGATGGGAACTTGGCTCGTGTTGGTTGCAACATCTGCAAAAGCATGAAGCCTCAAAAGATACCAATTCTAAAAGCCCT GAGGATAATAGTGAGAACGAACAAGCTGTGAAAGGTCTTGGAAAGGAATTCAAATTTTTGAAGAAGAGGGATATGAAGCTTACTGTGACTTCCACACATG ATAGAGAAGAAATTGAATCTGGCCTGTGCAGCCAAGCTATGGGAATTAATGCCGGACAACATAGCAATGATGAGTCCAACATTGGGTGCGAATTGAGGAG ATTGGTTTCTGAAGAAGCCTTCTTGCGTCTGAAAGAATCTGGAACTGGCCTTCATTTAAAGTCAGCAGATGAGCTTCTTCAAACAGCATACAGATATTAT GATGAAGTTGCATTGCCTAAGCTGGTAACGGATTTTGGCTCCCTTGAACTTTCGCCTGTTGATGGTCGCACGCTGACTGACTTCATGCATTTTAGGGGAC TGCAGATGCGCTCTTTGGGACGGGTGGTTGAACTTGCAGAGAAGCTTCCTCACATACAATCACTTTGTGTTCATGAGATGGTTACTCGAGCTTTCAAGCA CATACTTAAAGTGGTTATTGCATCTATCAACAATATATCAGACTTGTCTGCAGCCATAGCTTCATCCCTAAATTTCTTGCTTGGAAGTTGTGGGGTTGAA GGCAGTGATCAAACTATGAAGGATGACCATGCTCTCAAATTGCAGTGGTTGCGAACATTTCTTTCCCAGAGATTTGGTTGGACACTGAAAGATGAATTTC AGCATTTGAGAAAGCTTTCAATTCTTCGTGGACTTTGCCATAAGGTTGGATTGGAGTTGGTTCCAAGAGATTATGACATGGAGTGCTCAAACCCCTTTAG GAAATGCGACATTATCAGTGTAGTTCCCGTGTGTAAGAATGTAGGATGCTCTTCAGCTGATGGACGGACTCTGTTGGAGTCGTCGAAGGTCGCTCTTGAT AAAGGAAAGCTTGAGGATGCTGTTAATTATGGAACGAAGGCTCTAGCAAAGATGATAGCTGTATGTGGTCCCTATCATCGGACTACTGCCAGTGCTTACA GTCTTCTAGCTGTTGTTCTCTACCACACAGGAGACTTTAATCAGGCTACTATATACCAGCAAAAGGCTTTGGATATCAATGAGAGGGAACTTGGTCTTGA TCATCCAGATACAATGAAAAGCTATGGTGATCTTTCTGTGTTTTATTATCGTCTTCAACATGTTGAGTTAGCTTTGAAATATGTGAACCGTGCTTTATTC CTTCTTCAATTTGCTTGTGGTCTGTCTCACCCTAATACCGCCGCTACATACATCAATGTGGCTATGATGGAAGAGGGTATGGGAAATGTTCATGTTGCTC TCAGATACCTGCATGAAGCTCTAAAGTGCAATCAAAGATTGTTAGGGGCAGATCATATACAGACAGCTGCAAGCTACCATGCTATAGCCATTGCTCTTTC TCTGATGGAGGCATATTCCTTAAGTGTTCAACATGAGCAAACGACACTCAAGATACTTCAGGCAAAACTTGGAACGGAGGATCTTCGTACTCAGGATGCT GCTGCATGGCTTGAATATTTTGAATCAAAAGCCCTAGAGCAGCAAGAAGCAGCACGAAATGGAACTCCAAAGCCAGATGCATCCATCGCAAGCAAAGGTC ACCTTAGTGTATCAGATCTCCTGGATTACATTAGTCCTGATCAAGACTCTAGAGGAAGTGATGCACTCAGGAAACAGCGTCGTGCAAAGGTACTCCAGGT TAGTGATAAGTCCTATCAAGTCCATCAAGATGTAATGGTCAAAGATGGCTTGGGAAATGCAATGGTTATGACAGATGATGGCAACACTCAAGAACAAGGG GTGGATATGATTCATAATGAAGAAGCAGAGGAAAATGATGATATCACCAAGTACAGGCCCACAGTTGCGGGGGAAGTTGTTGAAGAAACAACTTCAGATG AAGGATGGCTAGAAGCCAATCCAAAAGGACGGTCATGGAAAGCTGCTGGCAGGAAATCTGGCCGTAGACGACCAGCTCTTGCAAAGCTAAACATAAATAC TGCAGAATATTCGAGTAATAGAGAAAGAAGGTATAGGAGTCAAATCATTTCCCCGGCACAAAGAAAAACTCCAAGGACAATTACAATGGAGGTGTCACCT GCGAAGCAATCAATTGAACTGCAGGCAAAAGCTACTGTCTCCAAACCTTTTTGTGCTCCGGCAAATCTCACTGCTATGGCATCAAAATCGCTCTCTTACA AAGAAGTAGCTGTGGCACCCCCTGGTATGGCTTTGAAGCCATCTCAGGAGATAGTAGAAGAATCAAGTGGGGCAAAACCTGAAACTCAGATATGCGGCGT TGTACCTGAGACATTTAAGGAGGAGGAAAGCAATGATATCCCTGTTATTGATAATAAACCAGGTCCTGATGAAGCAGAAGGAACTCATGAAAGTGAAACT CAACCCGAAAAATCTGGCCCTGAAGTTGAGGAAATTTCTTCTTCTAATCAGGAAAAGTACATTGAGAAAAATGGAAGTAAGCTTTCAGCTGCAGCTGAAC CATTCAATCCAGGAGTGTGCCCACTGGTTCACCCTTTAAACTCAGCTTCTGCACCAAGCATATATGATGCGACAGCTAGTCAAGGAATGCTTGTAGTCCC AGCAGTGGCACCTCCACTTGCAAGAGTTCCTCGTGGGCCTAGGTCACCGCTGTATTATAGAACTGCTCAATCTTACCACATGAGACAAGGTCTCCTGAAA TACCGAACTCATTTGGCAACACAACCTAGAAGCATGAACCCACATGCACCTGAGTTTGTTCCCAGTAGAGCTTGGCAAACAAATCCTGAAAATGGAGATT CTGCTATTTCAACCGAGATGAAATCTTTGCTTGAGACAAGCAAGGCAAGAGAGGAAGAGGAGGACTTTGATGAGGAATCCGGTAATGAAGTTCAAGATTG TTCTACAAAAAGGACAACCTCTGAGACCGAGAAGGCAGAACTTGCAAGGCAGATATTGCTCAGTTTCATTGTGAAGTCAGTACAGAATAATATTGATGGT GGAAGCGAGACTCTAGGCAGTAAAAGGCTTGACAGTTCAGAAAGTTCTTCGGATGCAATAGCTAATGACACTGCAATTATAAAAATCCTCTATGGAAATG AAGGAAAGACAAAATTGGTTACTCAGTCCAGCGACGGTGAACAGCTGAAAACCCCAGATGCTAATAAAAACAATCACGGTGACGGTGAAGGATTTATAGT TGTGACAAAGCGGAGAAGAAACAAACAGCAGTTCACAAACGGGGTTGCTGGGTTGTACAACCAGCAATCACTCTGCGCACCTGTTCTTTGA
AA sequence Show only first row Show all	>Potri.003G031000.4 pacid=42787321 polypeptide=Potri.003G031000.4.p locus=Potri.003G031000 ID=Potri.003G031000.4.v4.1 annot-version=v4.1 MAPRSGRGKSNKARAERKRKEEKSVPSVVDVTVITPYESQVVLKVVPLLLGISTDRILDVKKLLAASVQTCHLTNYSLSHEVKGHGLHDRVEIISLKPCL LKIIEEDYTEESQAVAHVRRLLDIVACTTRFSNKSRRPSQSISQSKRSNSSRSPRTSTPATPLSDDAASETTSVSAAMSESMDMAAIHPTPKLSEFYDFF SFSHLPPPILDLRRCSEVKDGEERSRPGDYFEFQVKICNGKLIKVVASVKGFYAVGKQFSQSHSVVDLLQNLSRAFANAYDSLMKAFVEHNKFGNLPYGF RANTWLVPPSVADSPSNFPSLPVEDESWGGNGGGQGRYGGYDLRPWATDFAILASLPCKTEEERVVRDRKALLLHSQFVDVSIFKAVGAIQGVIDSNLQA RDTISGSFLLEDHVGDLSIVVERDAADASLKTVVKVNGNHLSGIPAKEIAQRNLLKGVTADESVVVHDTSSLSTVIVRLCGYTATVKVVGNVKKKKFDAQ DIEIDDLPDGGANALNINSLRVLLHKCCSAESSLGQSSHSTLEELEASRCLIRKVIKESLTKQEEKPIASERSIRWELGSCWLQHLQKHEASKDTNSKSP EDNSENEQAVKGLGKEFKFLKKRDMKLTVTSTHDREEIESGLCSQAMGINAGQHSNDESNIGCELRRLVSEEAFLRLKESGTGLHLKSADELLQTAYRYY DEVALPKLVTDFGSLELSPVDGRTLTDFMHFRGLQMRSLGRVVELAEKLPHIQSLCVHEMVTRAFKHILKVVIASINNISDLSAAIASSLNFLLGSCGVE GSDQTMKDDHALKLQWLRTFLSQRFGWTLKDEFQHLRKLSILRGLCHKVGLELVPRDYDMECSNPFRKCDIISVVPVCKNVGCSSADGRTLLESSKVALD KGKLEDAVNYGTKALAKMIAVCGPYHRTTASAYSLLAVVLYHTGDFNQATIYQQKALDINERELGLDHPDTMKSYGDLSVFYYRLQHVELALKYVNRALF LLQFACGLSHPNTAATYINVAMMEEGMGNVHVALRYLHEALKCNQRLLGADHIQTAASYHAIAIALSLMEAYSLSVQHEQTTLKILQAKLGTEDLRTQDA AAWLEYFESKALEQQEAARNGTPKPDASIASKGHLSVSDLLDYISPDQDSRGSDALRKQRRAKVLQVSDKSYQVHQDVMVKDGLGNAMVMTDDGNTQEQG VDMIHNEEAEENDDITKYRPTVAGEVVEETTSDEGWLEANPKGRSWKAAGRKSGRRRPALAKLNINTAEYSSNRERRYRSQIISPAQRKTPRTITMEVSP AKQSIELQAKATVSKPFCAPANLTAMASKSLSYKEVAVAPPGMALKPSQEIVEESSGAKPETQICGVVPETFKEEESNDIPVIDNKPGPDEAEGTHESET QPEKSGPEVEEISSSNQEKYIEKNGSKLSAAAEPFNPGVCPLVHPLNSASAPSIYDATASQGMLVVPAVAPPLARVPRGPRSPLYYRTAQSYHMRQGLLK YRTHLATQPRSMNPHAPEFVPSRAWQTNPENGDSAISTEMKSLLETSKAREEEEDFDEESGNEVQDCSTKRTTSETEKAELARQILLSFIVKSVQNNIDG GSETLGSKRLDSSESSSDAIANDTAIIKILYGNEGKTKLVTQSSDGEQLKTPDANKNNHGDGEGFIVVTKRRRNKQQFTNGVAGLYNQQSLCAPVL

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT1G15290			Tetratricopeptide repeat (TPR)...		Potri.003G031000 [exp]	0	1
AT2G18570			UDP-Glycosyltransferase superf...		Potri.007G030500 [exp]	1.41	0.8028	Pt-CGT5.1
AT3G54440			glycoside hydrolase family 2 p...		Potri.003G196500 [exp]	2.82	0.8109
AT4G08170			Inositol 1,3,4-trisphosphate 5...		Potri.005G149800 [exp]	4.47	0.7674
AT2G30500			Kinase interacting (KIP1-like)...		Potri.013G158100 [exp]	7.81	0.7018
AT3G52750		FTSZ2-2	Tubulin/FtsZ family protein (....		Potri.006G083100 [exp]	7.93	0.7621
AT1G22340		ATUGT85A7	UDP-glucosyl transferase 85A7 ...		Potri.007G132400 [exp]	8.00	0.7619
AT5G20030			Plant Tudor-like RNA-binding p...		Potri.005G216200 [exp]	13.41	0.7906
AT2G01080			Late embryogenesis abundant (L...		Potri.001G208000 [exp]	14.83	0.7601
AT4G20800			FAD-binding Berberine family p...		Potri.001G459500 [exp]	15.55	0.7352
AT2G26560		PLP2, PLAIIA, P...	PATATIN-LIKE PROTEIN 2, phosph...		Potri.007G040400 [exp]	23.91	0.7300

Compare expression of checked genes

Potri.003G031000 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.