Plant FIBer expression Database

Potri.003G031100 [POPLAR]


External link
JGI Phytozome v13PopgenieAspWood                  
Symbol
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT1G52500 445 / 7e-156 ATMMH-2, ATMMH-1, FPG-2, ATFPG-2, FPG-1, ATFPG-1 FORMAMIDOPYRIMIDINE-DNA GLYCOSYLASE 2, A. THALIANA FORMAMIDOPYRIMIDINE-DNA GLYCOSYLASE 1, MUTM homolog-1 (.1.2)
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Flax homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10035876
[exp]
389 / 8e-134 AT1G52500 400 / 3e-138 FORMAMIDOPYRIMIDINE-DNA GLYCOSYLASE 2, A. THALIANA FORMAMIDOPYRIMIDINE-DNA GLYCOSYLASE 1, MUTM homolog-1 (.1.2)
PFAM info
Clan ID Clan name Pfam ID Pfam name Pfam description
PF01149 Fapy_DNA_glyco Formamidopyrimidine-DNA glycosylase N-terminal domain
CL0303 H2TH PF06831 H2TH Formamidopyrimidine-DNA glycosylase H2TH domain
Representative CDS sequence
>Potri.003G031100.1 pacid=42786925 polypeptide=Potri.003G031100.1.p locus=Potri.003G031100 ID=Potri.003G031100.1.v4.1 annot-version=v4.1
ATGCCAGAGCTACCGGAGGTAGAGGCGGCGAGAAGGGCGATAGAGGAACATTGCATAGGGAAGAAGATAAAGAAGGCCATCATTGCCGACGACAGTAAAG
TCATCGATGGAGTCTCTCCTTCTGATTTTGTGGCAGCACTTGTTGGCAAAACTATTGTCTCTGCTCTTAGAAAGGGAAAGAACTTGTGGCTCCAACTCGA
CTCCCCTCCCTTCCCTTCCTTTCAGTTCGGGATGGCTGGGGCTGTATATATTAAAGGAGTTGCGGTTACCAAATATAAAAGGTCTGCAGTAAATGACTCT
GATGAGTGGCCTTCCAAATATTCAAAGTTTTTTGTCCAACTAGATGATGGTCTGGAGCTTTCTTTCACTGACAAGAGGCGATTTGCTAAAGTCCGCTTGC
TTGAAGATCCAGCTTCTAAGCCCCCGATATCTGAGTTGGGCCCCGATGCATTACTGGAGCCGATGACAGTTGATGAACTTCATGGATCCCTAAGCAAGAA
GAAAGTTGCAATTAAGGCTCTATTACTTGATCAGAGTTTTGTATCTGGAATTGGTAACTGGATTGCAGATGAAGTGCTATACCAAGCTAGAATTCATCCA
CTGCAGATTGCTTCCAGCTTATCCAGAGAAAGTTCTGCAACTTTACACAAGTGCATCAAGGAGGTGATTGAAAAAGCAGTAGAAGTTGGGGCAGATAGTA
GTCAGTTCCCAAACAATTGGATTTTTCATTCTAGGGAAAAGAAGTCTAAGAAGACTTTCATTGATGGGAAGGAGATTGATTTTATTGTTGCTGGTGGTAG
GACAACGGCCTATGTACCGGGGTTACAGAAGCTAAATGGAAACCAAGCTGGGAAAGCAGTGGGAAAACCAAAAGCAAGAACTTCAAAGAAAAAAAGAGAT
GGGGATGATGATGACAATGACAACAATGAAGATGGTGGCAGTGAACCAACTTCCGAGGATGAAAAAATTGCAAGAAAGGCCAAATCAAAGAGAGAGTTGA
GGCCTAAAGGTCCTGGGAAAAAGCCTTCAGCTAAAAGAAAATCCAAAGCAAGTGATACTGACAGTGAAGAAGATGAGGGTGCTGCCACCGCCGCCGCCGC
CGACGACGATCAAAAGAAAAAACCTAGAAGAGTGACCAGCAGAAAACAAGTCATGGTAGGTAAAGCACCCAAGAAATTGGTTAACAATCAAAATACTAAC
AAACCAAGGAAGAAAGTGAAGTAG
AA sequence
>Potri.003G031100.1 pacid=42786925 polypeptide=Potri.003G031100.1.p locus=Potri.003G031100 ID=Potri.003G031100.1.v4.1 annot-version=v4.1
MPELPEVEAARRAIEEHCIGKKIKKAIIADDSKVIDGVSPSDFVAALVGKTIVSALRKGKNLWLQLDSPPFPSFQFGMAGAVYIKGVAVTKYKRSAVNDS
DEWPSKYSKFFVQLDDGLELSFTDKRRFAKVRLLEDPASKPPISELGPDALLEPMTVDELHGSLSKKKVAIKALLLDQSFVSGIGNWIADEVLYQARIHP
LQIASSLSRESSATLHKCIKEVIEKAVEVGADSSQFPNNWIFHSREKKSKKTFIDGKEIDFIVAGGRTTAYVPGLQKLNGNQAGKAVGKPKARTSKKKRD
GDDDDNDNNEDGGSEPTSEDEKIARKAKSKRELRPKGPGKKPSAKRKSKASDTDSEEDEGAATAAAADDDQKKKPRRVTSRKQVMVGKAPKKLVNNQNTN
KPRKKVK

DESeq2's median of ratios [POPLAR]

Mapped by: Order by: Show schematic diagram

Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol NWA:WTNWB:WTNWA:OE-ARK2NWB:OE-ARK2NWA:miRNA-ARK2NWB:miRNA-ARK2NW 0hrWT H20WT-NWTUA1dEY NWTUA1dEY+TUB15 NWTUA1dY+TUB9 NWPde NWNWA:WT GANWBWT GATW:WTTW:WT GANWA:OE-ARK2 GANWB:OE-ARK2 GATW:OE-ARK2TW:OE-ARK2 GANWA:miRNA-ARK2 GANWB:miRNA-ARK2 GATW:miRNA-ARK2TW:miRNA-ARK2 GATW 2hrTW 8hrTW 24hrTW 48hrTW 96hrTW 336hrWT ACC35S::etr1-1 H2035S::etr1-1 ACCLMX5::etr1-1 H20LMX5::etr1-1 ACCWT-TWTUA1dEY TWTUA1dEY+TUB15 TWTUA1dY+TUB9 TWPde TWOW:WTOW:WT GAOW:OE-ARK2OW:OE-ARK2 GAOW:miRNA-ARK2OW:miRNA-ARK2 GAOW 2hrOW 8hrOW 24hrOW 48hrOW 96hrOW 336hrRoot CTRRoot LongColdRoot LongDrougtRoot LongHeatRoot LongSaltRoot ShortColdRoot ShortDrougtRoot ShortHeatRoot ShortSaltPtr rootLeaf CTRLeaf LongColdLeaf LongDrougtLeaf LongHeatLeaf LongSaltLeaf ShortColdLeaf ShortDrougtLeaf ShortHeatLeaf ShortSaltPtr leafStem CTRStem LongColdStem LongDrougtStem LongHeatStem LongSaltStem ShortColdStem ShortDrougtStem ShortHeatStem ShortSaltPtr shootPtr xylemPtr phloemPtr fiberPtr vesselPtr fiber vessel ray
AT1G52500 ATMMH-2, ATMMH-... FORMAMIDOPYRIMIDINE-DNA GLYCOS... Potri.003G031100
[exp]
0 1
AT5G27860 unknown protein Potri.005G023000
[exp]
4.24 0.7805
AT2G32260 ATCCT1 phosphorylcholine cytidylyltra... Potri.001G159400
[exp]
4.47 0.7917
AT3G50670 U1SNRNP, U1-70K U1 small nuclear ribonucleopro... Potri.007G026900
[exp]
6.32 0.7542
AT5G03730 AtCTR1, SIS1, C... SUGAR-INSENSITIVE 1, CONSTITUT... Potri.008G025800
[exp]
16.00 0.7109
AT2G18350 ZF_HD ATHB24, ZHD6 ZINC FINGER HOMEODOMAIN 6, hom... Potri.005G122500
[exp]
21.02 0.6888
AT5G12100 pentatricopeptide (PPR) repeat... Potri.010G249800
[exp]
22.49 0.6669
AT3G47990 SIS3 SUGAR-INSENSITIVE 3 (.1) Potri.015G074900
[exp]
25.80 0.7040
AT3G15280 unknown protein Potri.001G398300
[exp]
26.07 0.6988
AT4G37540 AS2 LBD39 LOB domain-containing protein ... Potri.014G017400
[exp]
29.08 0.7452
AT2G20210 RNI-like superfamily protein (... Potri.014G194800
[exp]
35.91 0.7114

Potri.003G031100 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.