Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G52520 931 / 0 FAR1_related FRS6 FAR1-related sequence 6 (.1) AT1G80010 575 / 0 FAR1_related FRS8 FAR1-related sequence 8 (.1) AT4G15090 377 / 7e-120 FAR1_related FAR1 FAR-RED IMPAIRED RESPONSE 1, FRS (FAR1 Related Sequences) transcription factor family (.1) AT3G22170 364 / 4e-115 FAR1_related FHY3 far-red elongated hypocotyls 3 (.1.2) AT1G76320 333 / 4e-104 FAR1_related FRS4 FAR1-related sequence 4 (.1.2) AT4G38180 320 / 1e-98 FAR1_related FRS5 FAR1-related sequence 5 (.1) AT4G19990 318 / 4e-98 FAR1_related FRS1 FAR1-related sequence 1 (.1.2) AT2G27110 317 / 6e-97 FAR1_related FRS3 FAR1-related sequence 3 (.1.2.3) AT3G06250 297 / 2e-90 FAR1_related FRS7 FAR1-related sequence 7 (.1) AT5G18960 291 / 4e-88 FAR1_related FRS12 FAR1-related sequence 12 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.003G031200 [exp] 722 / 0 AT1G80010 726 / 0.0 FAR1-related sequence 8 (.1) Potri.006G256300 [exp] 693 / 0 AT1G52520 672 / 0.0 FAR1-related sequence 6 (.1) Potri.001G201600 [exp] 657 / 0 AT1G52520 606 / 0.0 FAR1-related sequence 6 (.1) Potri.003G110300 [exp] 406 / 2e-130 AT4G15090 799 / 0.0 FAR-RED IMPAIRED RESPONSE 1, FRS (FAR1 Related Sequences) transcription factor family (.1) Potri.006G020600 [exp] 385 / 4e-123 AT4G15090 1078 / 0.0 FAR-RED IMPAIRED RESPONSE 1, FRS (FAR1 Related Sequences) transcription factor family (.1) Potri.006G020700 [exp] 374 / 6e-119 AT3G22170 1184 / 0.0 far-red elongated hypocotyls 3 (.1.2) Potri.016G018300 [exp] 372 / 4e-118 AT3G22170 1139 / 0.0 far-red elongated hypocotyls 3 (.1.2) Potri.011G145800 [exp] 360 / 1e-113 AT4G38180 1003 / 0.0 FAR1-related sequence 5 (.1) Potri.004G209000 [exp] 352 / 7e-111 AT4G38180 1163 / 0.0 FAR1-related sequence 5 (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10031825 [exp] 326 / 1e-103 AT1G76320 656 / 0.0 FAR1-related sequence 4 (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0274 [poplar] [flax] WRKY-GCM1 PF03101 [poplar] [flax] FAR1 FAR1 DNA-binding domain CL0274 [poplar] [flax] PF04434 [poplar] [flax] SWIM SWIM zinc finger CL0219 [poplar] [flax] RNase_H PF10551 [poplar] [flax] MULE MULE transposase domain
Representative CDS sequence Show only first row Show all	>Potri.003G031400.1 pacid=42787069 polypeptide=Potri.003G031400.1.p locus=Potri.003G031400 ID=Potri.003G031400.1.v4.1 annot-version=v4.1 ATGGCTGAAGCAGGGTGTAGTAATGAGCGATTGACTAATGGTGAATTGAATGAGAAGGAAAAAGAATTGGATGATGGGACTGAAGAAAAGAAGGAATTTG TTGCTCCTGCGGTTGGGATGGAGTTTGAGTCTTATGATGATGCTTACAATTATTACAACTGTTATGCCAAGGAAGTGGGATTTCGTGTTAGGGTGAAGAA CTCGTGGTTCAAGCGGAATAGTCGGGAGAAATATGGTGCAGTGCTTTGTTGCAGTAGTCAGGGTTTTAAAAGAATTAAAGATGTCAATCGTTTAAGAAAG GAAACAAGAACTGGTTGTCCTGCAATGGTAAGGATGAGGTTGGCGGACTCCAAGAGGTGGAGGGTGTTAGAGGTCATGCTTGAACACAACCACTCGTTAG GGGCTAAGATATACAGACCTGTTAAGAAGGTGAGTACTGGAAACAAAAGGAAGTCCCTTTCAAGTAATTCAGATGCTGAGGGACGTACCATTAAGTTGTA TCGAGCACTTGTCATAGATTCAGAAGGTAATGGGAACTCAAGTCTGAATGCAAGAGATGTTATGAATTTTTCTGAACTTCCTGATCAACTGAACCTTAAA AGGGGTGATGCACAGGCTATTTATAACTACTTTTGTCGGATGCAGTTGACGAATCCAAACTTCTTTTATTTGATGGATCTCAATGATGAGGGGCATCTGA GAAATGTGTTTTGGGTTGATGCTAGGTCAAGGGCTTCTTGTGGTTACTTTGGTGATGTTGTTTATATTGACAACACGTATTTGTCAAGTAAATTTGAGAT CCCACTGGTGGCATTTGTTGGAACGAATCACCATAGCCAGTCTGTTTTGCTGGGCTGCGGCCTACTTGCAGGCGAGACAACTGAATCTTATATTTGGTTG TTCAAGGCATGGATTACATGTATGTCAGGTTGCAGTCCACAAACTATTATTACAGACAGGTGTAGAACTTTGCAAACCGCAATAGCAGAGGCGTTTCCAA GAGCTCATCATTGTTTTGGATTGTCGCATATCATGAAAAGAGTACCAGAAAAACTGGGAGGATTGCGCCACTATGATGCTATAAAAAAAGCGTTTATGAA AGCAGTTTATGAAACTTTGAAAGTGATTGAATTTGAAGTAGCATGGGGATTTATGGTCCAGCGATTTGGAGTTGGTGATCATGAATGGCTTCAGTCATTA TATGAAGATCGTGTTCGGTGGGCTCCTGTTTATTTAAAAGACACAGTTTTTGCTGGAATGTCCGCTTCACGGTCAGGTGAGATCCTAAATCCATTTTTTG AGAGATACGTGCATAAACAAACTCCTTTAAAAGAATTTCTGGACAAGTATGAATTAGCATTACAAAAAAAGCACAAGGAAGAAACTATTGCAGATATTGA GTCCAGAAGCGTAGGCCCCGCTTTGAAAACCAGATGTTCATTTGAGTTGCAGCTGTCGAAGTTGTACAGCAAGGAAATATTCAAGAAGTTCCAATTTGAG GTGGAAGAAATGTATTCGTGTTTTAGCACCACACAGATACACGTTGACGGGCCAATCATTATATTTTTGGTCAAAGAGCGTGTTCTGGGTGAGAGTAATA GGAGGGAAATTAGAGACTTTGAGGTTTTATACAACAGAAGTGCAGGAGAGGTTCGTTGCATCTGCAGTTGCTTCAACTTCTATGGGTACTTATGCCGCCA TGCATTGTGTGTGCTTAACTTCAATGGAGTAGAGGAGATCCCATGTAAGTATATACTGCCACGATGGAAAAAGGATTACAAGCGCTTGTATATTCCAGAC CATAGTTCCAATGATGTTGATTCTACCGATCATATGCAATGGTTTAATCAATTGTATAGAAGTGCTTTACAAGTTGTGGAGGAAGGGGTGATTTCTCTTG AACATTACAGTGTCGCACTAGAAGCTTTTGAAGAGTCGCAAAATAGGGTTCGTGAGGTAGAAGAAAAGCAAGCATAA
AA sequence Show only first row Show all	>Potri.003G031400.1 pacid=42787069 polypeptide=Potri.003G031400.1.p locus=Potri.003G031400 ID=Potri.003G031400.1.v4.1 annot-version=v4.1 MAEAGCSNERLTNGELNEKEKELDDGTEEKKEFVAPAVGMEFESYDDAYNYYNCYAKEVGFRVRVKNSWFKRNSREKYGAVLCCSSQGFKRIKDVNRLRK ETRTGCPAMVRMRLADSKRWRVLEVMLEHNHSLGAKIYRPVKKVSTGNKRKSLSSNSDAEGRTIKLYRALVIDSEGNGNSSLNARDVMNFSELPDQLNLK RGDAQAIYNYFCRMQLTNPNFFYLMDLNDEGHLRNVFWVDARSRASCGYFGDVVYIDNTYLSSKFEIPLVAFVGTNHHSQSVLLGCGLLAGETTESYIWL FKAWITCMSGCSPQTIITDRCRTLQTAIAEAFPRAHHCFGLSHIMKRVPEKLGGLRHYDAIKKAFMKAVYETLKVIEFEVAWGFMVQRFGVGDHEWLQSL YEDRVRWAPVYLKDTVFAGMSASRSGEILNPFFERYVHKQTPLKEFLDKYELALQKKHKEETIADIESRSVGPALKTRCSFELQLSKLYSKEIFKKFQFE VEEMYSCFSTTQIHVDGPIIIFLVKERVLGESNRREIRDFEVLYNRSAGEVRCICSCFNFYGYLCRHALCVLNFNGVEEIPCKYILPRWKKDYKRLYIPD HSSNDVDSTDHMQWFNQLYRSALQVVEEGVISLEHYSVALEAFEESQNRVREVEEKQA

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT1G52520	FAR1_related	FRS6	FAR1-related sequence 6 (.1)		Potri.003G031400 [exp]	0	1
AT1G79090			unknown protein		Potri.001G457800 [exp]	3.16	0.8330
AT2G45620			Nucleotidyltransferase family ...		Potri.014G073300 [exp]	5.65	0.8207
AT5G04670			Enhancer of polycomb-like tran...		Potri.010G235900 [exp]	8.71	0.7971
AT5G13310			unknown protein		Potri.003G163100 [exp]	8.83	0.8173
AT5G16220			Octicosapeptide/Phox/Bem1p fam...		Potri.017G119100 [exp]	8.83	0.8249
AT3G60850			unknown protein		Potri.014G070200 [exp]	11.09	0.8240
AT3G59670			unknown protein		Potri.007G051100 [exp]	11.13	0.7881
AT1G61040		VIP5	vernalization independence 5, ...		Potri.004G039500 [exp]	16.70	0.8151
AT5G02320	MYB	MYB3R-5, ATMYB3...	ARABIDOPSIS THALIANA MYB DOMAI...		Potri.006G085600 [exp]	16.88	0.7721	MYB211,Pt-MYB3.1
AT5G01960			RING/U-box superfamily protein...		Potri.006G111800 [exp]	22.91	0.8182

Compare expression of checked genes

Potri.003G031400 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.