Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G52520 221 / 3e-66 FAR1_related FRS6 FAR1-related sequence 6 (.1) AT1G80010 188 / 5e-54 FAR1_related FRS8 FAR1-related sequence 8 (.1) AT4G15090 139 / 3e-36 FAR1_related FAR1 FAR-RED IMPAIRED RESPONSE 1, FRS (FAR1 Related Sequences) transcription factor family (.1) AT2G27110 124 / 3e-31 FAR1_related FRS3 FAR1-related sequence 3 (.1.2.3) AT4G19990 121 / 3e-30 FAR1_related FRS1 FAR1-related sequence 1 (.1.2) AT3G22170 120 / 5e-30 FAR1_related FHY3 far-red elongated hypocotyls 3 (.1.2) AT4G38180 114 / 5e-28 FAR1_related FRS5 FAR1-related sequence 5 (.1) AT1G76320 112 / 3e-27 FAR1_related FRS4 FAR1-related sequence 4 (.1.2) AT3G06250 99 / 1e-22 FAR1_related FRS7 FAR1-related sequence 7 (.1) AT2G32250 97 / 8e-22 FAR1_related FRS2 FAR1-related sequence 2 (.1.2.3.4)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G201600 [exp] 445 / 3e-153 AT1G52520 606 / 0.0 FAR1-related sequence 6 (.1) Potri.003G031400 [exp] 273 / 3e-86 AT1G52520 931 / 0.0 FAR1-related sequence 6 (.1) Potri.006G256300 [exp] 270 / 3e-85 AT1G52520 672 / 0.0 FAR1-related sequence 6 (.1) Potri.003G031200 [exp] 265 / 2e-82 AT1G80010 726 / 0.0 FAR1-related sequence 8 (.1) Potri.006G020600 [exp] 143 / 1e-37 AT4G15090 1078 / 0.0 FAR-RED IMPAIRED RESPONSE 1, FRS (FAR1 Related Sequences) transcription factor family (.1) Potri.003G207100 [exp] 137 / 6e-36 AT1G76320 947 / 0.0 FAR1-related sequence 4 (.1.2) Potri.003G110300 [exp] 137 / 8e-36 AT4G15090 799 / 0.0 FAR-RED IMPAIRED RESPONSE 1, FRS (FAR1 Related Sequences) transcription factor family (.1) Potri.006G020700 [exp] 130 / 2e-33 AT3G22170 1184 / 0.0 far-red elongated hypocotyls 3 (.1.2) Potri.016G018300 [exp] 124 / 2e-31 AT3G22170 1139 / 0.0 far-red elongated hypocotyls 3 (.1.2)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10031825 [exp] 114 / 7e-28 AT1G76320 656 / 0.0 FAR1-related sequence 4 (.1.2)
PFAM info
Representative CDS sequence Show only first row Show all	>Potri.003G031500.2 pacid=42784571 polypeptide=Potri.003G031500.2.p locus=Potri.003G031500 ID=Potri.003G031500.2.v4.1 annot-version=v4.1 ATGATTTATTTTAATAAGAACTCCTCTACTCTTCAAACCTCTGTTCCAGTTACAGATCCCAACTTCTTTTACGTGGTAGATCTTAACGAGAAAGGATACA TGAGAAATTTGTTTTGGACTGATGCAAGGTCTAGGGTTGCATCTGCTTATTTCTGTGATGTAATTGCAAGTGACACTGTGTGCTTGACATACAAATTTGA AGCACCACTGGTTGCATTTATTGGAGAAAACCACCATGCCATCCACTTGGGCTTCGGTTTGCTTGCCGGTGAAACCACTGAATCATATGCATGGCTAGCT TCTCATTGTTTTATTTTGTCACGTATCAGGCAAGGAATTCCAGATACTATGGGAGAATTGTTTTATTTTGAAGCAACTCAAGTATCATTGAATAGAGTAG TTCACTACTTCCTCGAGCCTGAGGAATTTGAAGCTGCTTGGGAAGAGATGACACAGCGTCATGGAATTAGGGATCATAGATGGATCCAAGCATTACACGA AGACAGGAAAAAAGGGGTTCCAGCTTATTCGAAAGACACTGGCAGGAATGAAAATCATCGGCTTGAATCCTTGGCTGATATGGATTTGAGGAATTCAAGT TTTATGCTAAAACCAAGATGTTACTTGGAGCTGCAGCTGTCAAAATTGTACACAAACAAAATCTTGAGGAGATTCGTAAGGGAGGTGGAGGGCATGTTCT CCTGTTTTAGAACAAGACAAGCTTATGTTGATGGGCAGGTGATGACATATATTGTCAAAGAACAAGGATGTTCTTTGTGCTTGTGGATTGTTTATTTATG TAGGCATGCATTAAATGTTCTTAACCAAAATGGCTTGGAGGAGATCCCGCCGCGATATATTCTCACACGATGGAGAAAAGATATGAAGCGTTCTTATGTT CTTGATCACAACTGCCGTGGTATTGATACTAATAGTCCAATTCACAGGTACGACCATTTGTACAGATGCTATGTGCAGGTTGTAGCGGAAGGAAGGAAAT CACAAGATTAA
AA sequence Show only first row Show all	>Potri.003G031500.2 pacid=42784571 polypeptide=Potri.003G031500.2.p locus=Potri.003G031500 ID=Potri.003G031500.2.v4.1 annot-version=v4.1 MIYFNKNSSTLQTSVPVTDPNFFYVVDLNEKGYMRNLFWTDARSRVASAYFCDVIASDTVCLTYKFEAPLVAFIGENHHAIHLGFGLLAGETTESYAWLA SHCFILSRIRQGIPDTMGELFYFEATQVSLNRVVHYFLEPEEFEAAWEEMTQRHGIRDHRWIQALHEDRKKGVPAYSKDTGRNENHRLESLADMDLRNSS FMLKPRCYLELQLSKLYTNKILRRFVREVEGMFSCFRTRQAYVDGQVMTYIVKEQGCSLCLWIVYLCRHALNVLNQNGLEEIPPRYILTRWRKDMKRSYV LDHNCRGIDTNSPIHRYDHLYRCYVQVVAEGRKSQD

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT1G52520	FAR1_related	FRS6	FAR1-related sequence 6 (.1)		Potri.003G031500 [exp]	0	1
					Potri.001G132850 [exp]	3.00	0.8071
AT1G01490			Heavy metal transport/detoxifi...		Potri.001G099500 [exp]	4.58	0.8130
AT5G16460			Putative adipose-regulatory pr...		Potri.013G085850 [exp]	22.53	0.8093
AT1G63450		RHS8	root hair specific 8 (.1)		Potri.003G126001 [exp]	32.86	0.6768
AT3G60740		TFCD, EMB133, C...	TITAN 1, TUBULIN FOLDING COFAC...		Potri.002G145750 [exp]	35.49	0.6815
AT1G03910			unknown protein		Potri.001G242900 [exp]	41.35	0.7981
AT5G42340		PUB15	Plant U-Box 15 (.1)		Potri.002G009900 [exp]	59.29	0.7801
AT2G26150	HSF	ATHSFA2	heat shock transcription facto...		Potri.006G148200 [exp]	67.11	0.7688
AT3G10230		AtLCY, LYC	lycopene cyclase (.1.2)		Potri.001G219250 [exp]	77.25	0.7284
					Potri.010G112401 [exp]	106.81	0.7612

Compare expression of checked genes

Potri.003G031500 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.