Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G15930 783 / 0 Pentatricopeptide repeat (PPR) superfamily protein (.1) AT2G29760 670 / 0 OTP81 ORGANELLE TRANSCRIPT PROCESSING 81, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT1G08070 611 / 0 EMB3102, OTP82 ORGANELLE TRANSCRIPT PROCESSING 82, EMBRYO DEFECTIVE 3102, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT3G22690 568 / 0 unknown protein AT4G14820 563 / 0 Pentatricopeptide repeat (PPR) superfamily protein (.1) AT2G22410 540 / 0 SLO1 SLOW GROWTH 1 (.1) AT4G30700 535 / 2e-180 Pentatricopeptide repeat (PPR) superfamily protein (.1) AT3G12770 531 / 3e-180 MEF22 mitochondrial editing factor 22 (.1) AT5G66520 526 / 3e-179 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT3G08820 526 / 2e-178 Pentatricopeptide repeat (PPR) superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.009G044700 [exp] 657 / 0 AT2G29760 1013 / 0.0 ORGANELLE TRANSCRIPT PROCESSING 81, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.018G071800 [exp] 652 / 0 AT1G08070 606 / 0.0 ORGANELLE TRANSCRIPT PROCESSING 82, EMBRYO DEFECTIVE 3102, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.018G040100 [exp] 637 / 0 AT1G08070 974 / 0.0 ORGANELLE TRANSCRIPT PROCESSING 82, EMBRYO DEFECTIVE 3102, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.005G011000 [exp] 630 / 0 AT1G08070 572 / 0.0 ORGANELLE TRANSCRIPT PROCESSING 82, EMBRYO DEFECTIVE 3102, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.006G105700 [exp] 607 / 0 AT3G08820 810 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.016G128900 [exp] 599 / 0 AT3G08820 812 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.010G086200 [exp] 597 / 0 AT4G14820 840 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.010G083700 [exp] 584 / 0 AT3G22690 1050 / 0.0 unknown protein Potri.005G012600 [exp] 579 / 0 AT2G29760 540 / 0.0 ORGANELLE TRANSCRIPT PROCESSING 81, Tetratricopeptide repeat (TPR)-like superfamily protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10040680 [exp] 659 / 0 AT2G29760 926 / 0.0 ORGANELLE TRANSCRIPT PROCESSING 81, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10018223 [exp] 651 / 0 AT2G29760 931 / 0.0 ORGANELLE TRANSCRIPT PROCESSING 81, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10033026 [exp] 629 / 0 AT1G08070 921 / 0.0 ORGANELLE TRANSCRIPT PROCESSING 82, EMBRYO DEFECTIVE 3102, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10029436 [exp] 618 / 0 AT3G08820 828 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Lus10030053 [exp] 588 / 0 AT1G08070 884 / 0.0 ORGANELLE TRANSCRIPT PROCESSING 82, EMBRYO DEFECTIVE 3102, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10010909 [exp] 558 / 0 AT5G66520 537 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10029344 [exp] 555 / 0 AT5G06540 803 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Lus10031423 [exp] 546 / 0 AT5G66520 538 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10017446 [exp] 544 / 0 AT1G11290 1152 / 0.0 CHLORORESPIRATORY REDUCTION22, Pentatricopeptide repeat (PPR) superfamily protein (.1) Lus10016425 [exp] 537 / 0 AT2G22070 1002 / 0.0 pentatricopeptide (PPR) repeat-containing protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0020 [poplar] [flax] TPR PF01535 [poplar] [flax] PPR PPR repeat CL0020 [poplar] [flax] TPR PF13041 [poplar] [flax] PPR_2 PPR repeat family CL0109 [poplar] [flax] CDA PF14432 [poplar] [flax] DYW_deaminase DYW family of nucleic acid deaminases
Representative CDS sequence Show only first row Show all	>Potri.003G031600.2 pacid=42787035 polypeptide=Potri.003G031600.2.p locus=Potri.003G031600 ID=Potri.003G031600.2.v4.1 annot-version=v4.1 ATGCCATTTTCACTTGGCTTCGAAATACATCTTCCCTCCACAAAACACCATCTCCATTCTTCATTTCTCAAGAAAATGATTTCCATGGCATGTAGTCAAT CATCCCCAGTAACTGAAAACCCTCCACTTTCCCTCTTTGAAACCTGCAAATCCATGTACCATCTCAAGCAAATCCATTCCCGAACAATCAAAACAGGCAT TATATGCAACCCCATTATACAAAACAAGATACTTTCTTTCTGCTGCTCCCGTGAATTTGGTGACATGTGTTATGCACGCCAACTGTTTGATACAATTCCT GAACCATCCGTGTTCAGTTGGAACATAATGTTTAAAGGGTATTCTAGGATTGCTTGTCCAAAATTAGGCGTTTCTTTGTATCTTGAAATGTTGGAGAGGA ATGTTAAGCCGGATTGTTACACGTATCCATTCTTGTTCAAGGGTTTTACACGTAGTGTTGCCTTACAATTAGGGAGGGAGCTGCATTGTCATGTAGTGAA ATATGGGCTTGATTCCAATGTCTTTGCTCACAATGCTTTGATAAATATGTATTCTTTGTGTGGATTAATTGATATGGCTCGTGGGATATTTGATATGAGT TGTAAGAGTGATGTTGTCACTTGGAATGCAATGATTTCTGGATATAACAGAATAAAGAAGTATGATGAAGCTAGAAAACTTTTTGACATGATGGAGGAGA AAGGAATTTTACCCACTTCGGTTACTTGTGTTTCAGTATTATCAGCGTGCTCTAAGTTGAAGGATTTAGAATGTGGCAAGCGGGTGCAGAAGTACATAAG AAATGGTGTAGTCGAGGTTAATTTGAAAGTAGAAAATGCTTTGATTGATATGTATGCATCATGTGGCGAAATGAATGTCGCACTTGGGATTTTCGAGAAT ATGAAGAATAGGGACGTGATTTCTTGGACTGCTATTGTTACGGGATTTGTGAATACAGGGCAAGTTGATGCAGCGAGAAAGTATTTTCATAAAATGCCTG AAAGAGACCATGTCTCGTGGACTGCCATGATAGATGGATATCTTCGACTTAATTGCTACAAAGAGGCTTTGATGCTTTTCCGTGAGATGCAAACTTCTAA AATAAAACCAGATGAGTTCACCATGGTTAGCGTACTTACAGCTTGTGCACAACTTGGGGCGCTAGAGCTAGGAGAATGGATAAGGACTTACATTGATAAA AACAAGGTCAAGAATGATACTTTTGTGGGGAATGCTTTGATAGACATGTACTTCAAATGTGGAAATGTTGAAATGGCATTAAGCATATTCAATACATTGC CTCAGCGGGACAAATTTACATGGACAGCCATGGTTGTTGGCCTAGCAATTAATGGATGTGGTGAAGAAGCTCTCAATATGTTTTCCCAAATGCTGAAAGC TTCTGTAACACCAGACGAGGTAACTTATGTTGGTGTTCTCTCTGCTTGTACTCATACTGGCATGGTAGATGAAGGAAAAAAGTTTTTTGCCAGCATGACT GCTCGGCATGGAATTGAACCGAATATAGCACATTATGGGTGCATGGTTGATCTTCTTGGCAAAGCTGGGCATCTAAAAGAAGCTCATGAAATTATTAAGA ACATGCCAATGAAACCTAATTCAATTGTCTGGGGAGCTCTTCTGGGTGCCTGTAGAATTCATAAAGATGCAGAAATGGCTGAAAGGGCCATAGAGCAGAT TCTTGAGTTAGAACCCAATAATGGAGCTGTTTATGTTCTGCAGTGTAATATATATGCAGCTTGCAATAAATGGGATAAATTGCGTGAATTGCGACAAGTG ATGATGGATAGAGGAATCAAGAAAACCCCAGGTTGCAGCTTGATTGAGATGAATGGTATTGTCCATGAATTTGTTGCTGGTGACCAGTCACATCCTCAAA CAAAAGAAATATATGGGAAGTTAAACAAAATGACAAGTGACTTGAAAATTGCGGGGTACTCACCTAATACTTCAGAGGTTTTCCTTGATATAGCAGAGGA GGATAAAGAGAATGCAGTTTACCGGCACAGCGAGAAGTTGGCTATTGCATTTGGGCTCATCAACTCAGGTCCTGGGGTCACGATCAGAATTGTGAAGAAT CTCAGAATGTGTATAGATTGTCACCATGTGGCAAAGTTGGTGTCAAAAGTGTATGATAGGGAAGTTATTGTCAGGGATAGAACTCGTTTTCATCATTTCA GGCATGGCTCCTGTTCATGTAAAGATTATTGGTGA
AA sequence Show only first row Show all	>Potri.003G031600.2 pacid=42787035 polypeptide=Potri.003G031600.2.p locus=Potri.003G031600 ID=Potri.003G031600.2.v4.1 annot-version=v4.1 MPFSLGFEIHLPSTKHHLHSSFLKKMISMACSQSSPVTENPPLSLFETCKSMYHLKQIHSRTIKTGIICNPIIQNKILSFCCSREFGDMCYARQLFDTIP EPSVFSWNIMFKGYSRIACPKLGVSLYLEMLERNVKPDCYTYPFLFKGFTRSVALQLGRELHCHVVKYGLDSNVFAHNALINMYSLCGLIDMARGIFDMS CKSDVVTWNAMISGYNRIKKYDEARKLFDMMEEKGILPTSVTCVSVLSACSKLKDLECGKRVQKYIRNGVVEVNLKVENALIDMYASCGEMNVALGIFEN MKNRDVISWTAIVTGFVNTGQVDAARKYFHKMPERDHVSWTAMIDGYLRLNCYKEALMLFREMQTSKIKPDEFTMVSVLTACAQLGALELGEWIRTYIDK NKVKNDTFVGNALIDMYFKCGNVEMALSIFNTLPQRDKFTWTAMVVGLAINGCGEEALNMFSQMLKASVTPDEVTYVGVLSACTHTGMVDEGKKFFASMT ARHGIEPNIAHYGCMVDLLGKAGHLKEAHEIIKNMPMKPNSIVWGALLGACRIHKDAEMAERAIEQILELEPNNGAVYVLQCNIYAACNKWDKLRELRQV MMDRGIKKTPGCSLIEMNGIVHEFVAGDQSHPQTKEIYGKLNKMTSDLKIAGYSPNTSEVFLDIAEEDKENAVYRHSEKLAIAFGLINSGPGVTIRIVKN LRMCIDCHHVAKLVSKVYDREVIVRDRTRFHHFRHGSCSCKDYW

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT3G15930			Pentatricopeptide repeat (PPR)...		Potri.003G031600 [exp]	0	1
AT5G37570			Pentatricopeptide repeat (PPR-...		Potri.006G207500 [exp]	2.82	0.9587
AT4G35130			Tetratricopeptide repeat (TPR)...		Potri.004G178200 [exp]	4.00	0.9474
AT3G15000			cobalt ion binding (.1)		Potri.011G112200 [exp]	5.47	0.9405
AT2G37310			Pentatricopeptide repeat (PPR)...		Potri.006G216100 [exp]	5.65	0.9439
AT5G08510			Pentatricopeptide repeat (PPR)...		Potri.002G175900 [exp]	6.24	0.9339
AT2G01390		EMB3111	EMBRYO DEFECTIVE 3111, Tetratr...		Potri.005G127500 [exp]	6.48	0.9458
AT5G61370			Pentatricopeptide repeat (PPR)...		Potri.012G068400 [exp]	6.70	0.9428
AT1G06440			Ubiquitin carboxyl-terminal hy...		Potri.002G244900 [exp]	7.93	0.9373
AT1G30010			Intron maturase, type II famil...		Potri.004G132450 [exp]	8.36	0.9398
AT2G15630			Pentatricopeptide repeat (PPR)...		Potri.009G109001 [exp]	8.94	0.9396

Compare expression of checked genes

Potri.003G031600 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.