Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G80030 607 / 0 Molecular chaperone Hsp40/DnaJ family protein (.1.2.3) AT3G17830 334 / 2e-109 Molecular chaperone Hsp40/DnaJ family protein (.1) AT2G22360 331 / 5e-109 DNAJ heat shock family protein (.1) AT4G39960 325 / 8e-107 Molecular chaperone Hsp40/DnaJ family protein (.1) AT5G48030 184 / 1e-52 GFA2 gametophytic factor 2 (.1) AT1G28210 170 / 1e-47 ATJ1 DNAJ heat shock family protein (.1.2) AT5G22060 143 / 1e-37 ATJ2 ARABIDOPSIS THALIANA DNAJ HOMOLOGUE 2, DNAJ homologue 2 (.1) AT3G44110 122 / 2e-30 ATJ3 DNAJ homologue 3 (.1.2) AT3G62600 103 / 5e-24 ATERDJ3B DNAJ heat shock family protein (.1) AT4G28480 86 / 1e-18 DNAJ heat shock family protein (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.005G073900 [exp] 338 / 9e-112 AT2G22360 659 / 0.0 DNAJ heat shock family protein (.1) Potri.015G035300 [exp] 338 / 2e-110 AT3G17830 504 / 4e-175 Molecular chaperone Hsp40/DnaJ family protein (.1) Potri.007G094900 [exp] 330 / 1e-108 AT2G22360 688 / 0.0 DNAJ heat shock family protein (.1) Potri.009G065500 [exp] 187 / 1e-53 AT5G48030 504 / 1e-177 gametophytic factor 2 (.1) Potri.001G271300 [exp] 183 / 2e-52 AT5G48030 530 / 0.0 gametophytic factor 2 (.1) Potri.005G160200 [exp] 164 / 4e-45 AT1G28210 478 / 3e-167 DNAJ heat shock family protein (.1.2) Potri.002G141100 [exp] 145 / 2e-38 AT3G44110 504 / 3e-178 DNAJ homologue 3 (.1.2) Potri.010G243100 [exp] 134 / 1e-34 AT3G44110 528 / 0.0 DNAJ homologue 3 (.1.2) Potri.009G015700 [exp] 130 / 2e-33 AT3G44110 629 / 0.0 DNAJ homologue 3 (.1.2)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10023122 [exp] 612 / 0 AT1G80030 636 / 0.0 Molecular chaperone Hsp40/DnaJ family protein (.1.2.3) Lus10011484 [exp] 609 / 0 AT1G80030 638 / 0.0 Molecular chaperone Hsp40/DnaJ family protein (.1.2.3) Lus10023148 [exp] 332 / 2e-109 AT2G22360 675 / 0.0 DNAJ heat shock family protein (.1) Lus10000631 [exp] 330 / 1e-108 AT2G22360 672 / 0.0 DNAJ heat shock family protein (.1) Lus10031908 [exp] 324 / 1e-105 AT3G17830 457 / 3e-157 Molecular chaperone Hsp40/DnaJ family protein (.1) Lus10031336 [exp] 323 / 6e-105 AT3G17830 459 / 5e-158 Molecular chaperone Hsp40/DnaJ family protein (.1) Lus10035920 [exp] 303 / 5e-98 AT2G22360 619 / 0.0 DNAJ heat shock family protein (.1) Lus10025742 [exp] 255 / 1e-80 AT2G22360 504 / 4e-179 DNAJ heat shock family protein (.1) Lus10027634 [exp] 181 / 3e-51 AT5G48030 494 / 8e-174 gametophytic factor 2 (.1) Lus10011934 [exp] 177 / 6e-50 AT5G48030 499 / 8e-176 gametophytic factor 2 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0392 [poplar] [flax] Chaperone-J PF00226 [poplar] [flax] DnaJ DnaJ domain CL0392 [poplar] [flax] PF00684 [poplar] [flax] DnaJ_CXXCXGXG DnaJ central domain CL0392 [poplar] [flax] PF01556 [poplar] [flax] DnaJ_C DnaJ C terminal domain
Representative CDS sequence Show only first row Show all	>Potri.003G031800.6 pacid=42786579 polypeptide=Potri.003G031800.6.p locus=Potri.003G031800 ID=Potri.003G031800.6.v4.1 annot-version=v4.1 ATGGCCATCACTGCCACTGTGACAACAGCAACCCTCTCCCTCCGCCCCTCGCTAACCTTCTCTTCACCATCACTGCCATCTTCTTCTTCTTCTTCTTTCT TTACAGGTAAGAAGTTTGCTTCTCCATCCATATTAACTGTGAGGTTCAGCAAGACCAAGACAAAGGCCTATACCAATGGTCCTGGGCCTTTCGTCTACGC TTCTGGGGATTACTATGCTACTCTCGGGGTCCCCAAATCTGCTACCAGTAAAGAAATTAAAGCTGCTTATCGAAGGTTAGCTCGTCAGTACCACCCTGAT GTCAACAAGGAACCAGGAGCAACTGAAAAGTTTAAGGAGATTAGTTCTGCGTATGAGGTGCTATCAGATGATAAAAAGAGGTCTCTGTATGATCAGTACG GTGAAGCTGGAGTTAAGAGTACAGTAGGGGGACCCTCAAGTGCTTATACGACTAATCCTTTTGACCTATTTGAGACATTCTTTGGGGCGAGCATGGGTGG TTTTCCTGGCATGGAACAAACTGGGTTCAAGACACGTCGTCGTAGTACTGTTACTAAGGGCGAAGACATACGCTATGACATTAGTTTAGAATTCTCTGAG GCCATATTCGGGGCAGAAAAGGAGTTTGAGCTTTCTCATTTGGAGACATGTGAAGTTTGTGCTGGTACTGGAGCAAAAATGGGTTCCAAGATGAGGATAT GCTCAACCTGTGGTGGCAGGGGTCAAGTTATGAGAACTGAGCAAACTCCCTTTGGTTTGTTCTCACAGGTTTCTGTCTGTCCCAATTGTGGTGGGGATGG CGAGGTCATTTCTGAATACTGTCGAAAATGCTCTGGTGAGGGGCGTATTCGTGTTAAGAAAAATATCAAAGTCAAGGTCCCTCCAGGAGTTGGTGCAGGC AGTATTCTAAGAGTAGCCGGAGAGGGTGATGCTGGACCAAGAGGTGGCCCTCTAGGGGATCTTTATGTGTATCTTGATGTTGAAGAGATAAGAGGAATCC AAAGAGATGGCATTAATCTCACCTCAACAATATCTATCAGTTATGCTGATGCAATACTGGGGACTGTTGTTAAGGTGAAAACAGTTGAAGGAATGAGTGA GCTTCAGATTCCACCTGGTACACAGCCAGGGGATGTGTTAGTGCTGGCTAAGAAAGGTGCACCTAAACTGAATAAACCATCCATCCGCGGTGATCACTTA TTTACTATTAAAGTTACAATACCAAAGCGTGTAAGTGCCAAAGAACGTGAATTGCTTGAAGAACTTGCTTCACTGAGTGATAAAAATATCTCTCGATCAC GAACTCAGCCTGCCACCAGAGATCAGGAACGCGAGGTGGAAACTGTTTCCGAGACAACTGAAGAATCAAGAGATCAAAATGACCCATGGCAGAAGTTGAA AGATTTTGCGGGTGACATTTACAGGTCTCTCACAAACGGTGCTCTGAAATGGCTGAAGGACAACCTCTAA
AA sequence Show only first row Show all	>Potri.003G031800.6 pacid=42786579 polypeptide=Potri.003G031800.6.p locus=Potri.003G031800 ID=Potri.003G031800.6.v4.1 annot-version=v4.1 MAITATVTTATLSLRPSLTFSSPSLPSSSSSSFFTGKKFASPSILTVRFSKTKTKAYTNGPGPFVYASGDYYATLGVPKSATSKEIKAAYRRLARQYHPD VNKEPGATEKFKEISSAYEVLSDDKKRSLYDQYGEAGVKSTVGGPSSAYTTNPFDLFETFFGASMGGFPGMEQTGFKTRRRSTVTKGEDIRYDISLEFSE AIFGAEKEFELSHLETCEVCAGTGAKMGSKMRICSTCGGRGQVMRTEQTPFGLFSQVSVCPNCGGDGEVISEYCRKCSGEGRIRVKKNIKVKVPPGVGAG SILRVAGEGDAGPRGGPLGDLYVYLDVEEIRGIQRDGINLTSTISISYADAILGTVVKVKTVEGMSELQIPPGTQPGDVLVLAKKGAPKLNKPSIRGDHL FTIKVTIPKRVSAKERELLEELASLSDKNISRSRTQPATRDQEREVETVSETTEESRDQNDPWQKLKDFAGDIYRSLTNGALKWLKDNL

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT1G80030			Molecular chaperone Hsp40/DnaJ...		Potri.003G031800 [exp]	0	1
AT3G63510			FMN-linked oxidoreductases sup...		Potri.001G264900 [exp]	1.73	0.9600
AT4G17300		ATNS1, NS1, OVA...	ovule abortion 8, Class II ami...		Potri.007G129800 [exp]	2.00	0.9630
AT4G31850		PGR3	proton gradient regulation 3 (...		Potri.006G264800 [exp]	3.46	0.9544
AT3G59780			Rhodanese/Cell cycle control p...		Potri.013G128300 [exp]	4.79	0.9477
AT2G35500		SKL2	shikimate kinase-like 2, shiki...		Potri.003G096600 [exp]	5.65	0.9534
AT5G49030		OVA2	ovule abortion 2, tRNA synthet...		Potri.010G014500 [exp]	7.41	0.9539
AT1G66840		PMI2, WEB2	WEAK CHLOROPLAST MOVEMENT UNDE...		Potri.017G118900 [exp]	8.12	0.9605
AT5G25630			Tetratricopeptide repeat (TPR)...		Potri.018G037200 [exp]	8.94	0.9520
AT1G53800			unknown protein		Potri.003G073400 [exp]	9.38	0.9516
AT1G72640			NAD(P)-binding Rossmann-fold s...		Potri.003G063800 [exp]	10.09	0.9536

Compare expression of checked genes

Potri.003G031800 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.