Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G52540 451 / 2e-159 Protein kinase superfamily protein (.1) AT3G15890 445 / 6e-157 Protein kinase superfamily protein (.1) AT3G24540 279 / 7e-90 AtPERK3 proline-rich extensin-like receptor kinase 3, Protein kinase superfamily protein (.1) AT1G60800 283 / 8e-90 NIK3 NSP-interacting kinase 3 (.1) AT4G33430 280 / 5e-89 SERK3, RKS10, ELG, BAK1, ATSERK3, ATBAK1 RECEPTOR KINASES LIKE SERK 10, ELONGATED, SOMATIC EMBRYOGENESIS RECEPTOR-LIKE KINASE 3, BRI1-associated receptor kinase (.1.2) AT3G09010 270 / 1e-87 Protein kinase superfamily protein (.1) AT3G24550 276 / 3e-87 ATPERK1 proline-rich extensin-like receptor kinase 1, proline extensin-like receptor kinase 1 (.1) AT1G70460 277 / 4e-87 AtPERK13, RHS10 proline-rich extensin-like receptor kinase 13, root hair specific 10 (.1) AT1G71830 273 / 5e-86 ATSERK1, SERK1 somatic embryogenesis receptor-like kinase 1 (.1) AT1G68690 273 / 2e-85 AtPERK9 proline-rich extensin-like receptor kinase 9, Protein kinase superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G204000 [exp] 687 / 0 AT1G52540 427 / 7e-150 Protein kinase superfamily protein (.1) Potri.006G173800 [exp] 423 / 5e-148 AT1G52540 344 / 4e-117 Protein kinase superfamily protein (.1) Potri.015G134500 [exp] 413 / 4e-144 AT1G52540 335 / 2e-113 Protein kinase superfamily protein (.1) Potri.012G132200 [exp] 409 / 8e-143 AT1G52540 335 / 3e-114 Protein kinase superfamily protein (.1) Potri.001G203601 [exp] 272 / 8e-92 AT3G15890 129 / 8e-37 Protein kinase superfamily protein (.1) Potri.011G049600 [exp] 276 / 3e-90 AT3G09010 427 / 2e-149 Protein kinase superfamily protein (.1) Potri.001G206700 [exp] 278 / 4e-88 AT4G33430 927 / 0.0 RECEPTOR KINASES LIKE SERK 10, ELONGATED, SOMATIC EMBRYOGENESIS RECEPTOR-LIKE KINASE 3, BRI1-associated receptor kinase (.1.2) Potri.013G117200 [exp] 275 / 5e-87 AT1G34210 1013 / 0.0 somatic embryogenesis receptor-like kinase 2 (.1) Potri.003G023000 [exp] 274 / 9e-87 AT4G33430 961 / 0.0 RECEPTOR KINASES LIKE SERK 10, ELONGATED, SOMATIC EMBRYOGENESIS RECEPTOR-LIKE KINASE 3, BRI1-associated receptor kinase (.1.2)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10011490 [exp] 587 / 0 AT3G15890 466 / 2e-165 Protein kinase superfamily protein (.1) Lus10023130 [exp] 565 / 0 AT1G52540 473 / 3e-168 Protein kinase superfamily protein (.1) Lus10019988 [exp] 427 / 5e-149 AT1G52540 348 / 2e-118 Protein kinase superfamily protein (.1) Lus10001323 [exp] 416 / 7e-145 AT1G52540 353 / 3e-120 Protein kinase superfamily protein (.1) Lus10031673 [exp] 415 / 7e-145 AT1G52540 338 / 1e-114 Protein kinase superfamily protein (.1) Lus10006985 [exp] 415 / 1e-144 AT1G52540 348 / 8e-119 Protein kinase superfamily protein (.1) Lus10004825 [exp] 271 / 4e-88 AT3G09010 496 / 5e-176 Protein kinase superfamily protein (.1) Lus10028715 [exp] 275 / 2e-87 AT1G71830 748 / 0.0 somatic embryogenesis receptor-like kinase 1 (.1) Lus10011148 [exp] 269 / 2e-87 AT3G20530 560 / 0.0 Protein kinase superfamily protein (.1) Lus10043050 [exp] 269 / 3e-87 AT3G20530 561 / 0.0 Protein kinase superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0016 [poplar] [flax] PKinase PF00069 [poplar] [flax] Pkinase Protein kinase domain
Representative CDS sequence Show only first row Show all	>Potri.003G032100.1 pacid=42786796 polypeptide=Potri.003G032100.1.p locus=Potri.003G032100 ID=Potri.003G032100.1.v4.1 annot-version=v4.1 ATGGCCTTTGCTTCTATGTTTTGTTGTGTAAAGAATTCCGATCGGAAAGAGCGAGGAAAGAAGCAACCAACATGGCGGATTTTCTCCTTGAAGGAATTAC ACTCAGCAACTAACAACTTCAATTATGATAACAAGCTGGGAGAAGGGGGATTTGGCAGTGTTTATTGGGGTCAGCTTTGGGATGGATCACAGATTGCAGT TAAAAGGTTAAAGGTCTGGAGCGACAAGGCAGATATGGAATTTGCTGTTGAGGTGGAGATATTAGCACGTGTTAGGCACAAGAATCTGCTGAGTTTACGT GGATATTGCGCTGAAGGGCAAGAGCGTCTGATTGTATATGACTACATGCCAAATTTGAGCCTGCTCTCTCACCTTCATGGGCAGCACTCTTCAGAATGTC TTCTCGACTGGAAGAGGCGGATGAATATTGCGATAGGTTCTGCTGAGGGAATTGCTTATCTTCACCACCATGCGACCCCTCATATCATCCACAGAGACGT CAAAGCTAGCAATGTGTTACTAGATTCAGATTTCCAGGCTCAGGTTGCTGATTTTGGATTTGCAAAGTTAATCCCTGATGGTGCAACACATGTAACCACT AGAGTTAAAGGTACCCTTGGCTACCTTGCCCCCGAATATGCTATGCTTGGGAAAGCATCAGAGAGCTGTGATGTGTACAGCTTTGGCATTCTTTTGCTAG AGCTTGCAACTGGCAAGAAACCACTTGAGAAGCTGAGTGCCACAGTTAAAAGAATAATTACAGAGTGGGCTCAGCCGTTGGCTTGTGAGAGGAAATTCAG TGAACTGGCAGATCCCAAGCTGAATGGGAAGTACGACGAGGAAGAGCTGAAAAGGGTTGTCCTTGTCTCTCTCGTATGTACTCAGAATCAACCAGAGAGA AGACCCACAATGCTTGATGTGGTAGAGCTACTGAAGGGAGAGTCAAAGGAGAGATTATCTGAACTGGAAAATGATGAATTGTTCAAGCCCCCCCAGGCAG TTGATTATAATGATGGAATATCAGTTGCCGAGGACAGCTCGGACTTCATCTCGGAGGAGAAGGATGCGAACCGGGAAGTGAAAGAGATTGTACAAGAAAA TACTCACGATAGCTGA
AA sequence Show only first row Show all	>Potri.003G032100.1 pacid=42786796 polypeptide=Potri.003G032100.1.p locus=Potri.003G032100 ID=Potri.003G032100.1.v4.1 annot-version=v4.1 MAFASMFCCVKNSDRKERGKKQPTWRIFSLKELHSATNNFNYDNKLGEGGFGSVYWGQLWDGSQIAVKRLKVWSDKADMEFAVEVEILARVRHKNLLSLR GYCAEGQERLIVYDYMPNLSLLSHLHGQHSSECLLDWKRRMNIAIGSAEGIAYLHHHATPHIIHRDVKASNVLLDSDFQAQVADFGFAKLIPDGATHVTT RVKGTLGYLAPEYAMLGKASESCDVYSFGILLLELATGKKPLEKLSATVKRIITEWAQPLACERKFSELADPKLNGKYDEEELKRVVLVSLVCTQNQPER RPTMLDVVELLKGESKERLSELENDELFKPPQAVDYNDGISVAEDSSDFISEEKDANREVKEIVQENTHDS

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT1G52540			Protein kinase superfamily pro...		Potri.003G032100 [exp]	0	1
					Potri.005G211000 [exp]	8.94	0.8040
AT2G12550		NUB1	homolog of human NUB1, ubiquit...		Potri.018G118143 [exp]	9.79	0.7597
AT4G12350	MYB	ATMYB42	myb domain protein 42 (.1)		Potri.003G114100 [exp]	15.36	0.7998	MYB85.1
AT2G26850			F-box family protein (.1)		Potri.006G040000 [exp]	16.70	0.7271
AT2G44080		ARL	ARGOS-like (.1)		Potri.017G001400 [exp]	20.00	0.7410
AT1G72220			RING/U-box superfamily protein...		Potri.002G101800 [exp]	21.26	0.8010
AT1G55270			Galactose oxidase/kelch repeat...		Potri.003G217700 [exp]	26.38	0.6545
AT1G27500			Tetratricopeptide repeat (TPR)...		Potri.015G075300 [exp]	28.08	0.8005
AT1G08720		EDR1, ATEDR1	ENHANCED DISEASE RESISTANCE 1,...		Potri.013G034800 [exp]	28.63	0.7181	Pt-EDR1.2
AT2G40470	AS2	ASL11, LBD15	ASYMMETRIC LEAVES2-LIKE 11, LO...		Potri.013G156200 [exp]	29.10	0.7558

Compare expression of checked genes

Potri.003G032100 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.