Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G15820 337 / 1e-116 ROD1 REDUCED OLEATE DESATURATION 1, phosphatidic acid phosphatase-related / PAP2-related (.1) AT3G15830 331 / 3e-114 phosphatidic acid phosphatase-related / PAP2-related (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G204100 [exp] 418 / 6e-149 AT3G15820 334 / 1e-115 REDUCED OLEATE DESATURATION 1, phosphatidic acid phosphatase-related / PAP2-related (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10025747 [exp] 325 / 3e-112 AT3G15820 325 / 3e-112 REDUCED OLEATE DESATURATION 1, phosphatidic acid phosphatase-related / PAP2-related (.1) Lus10035915 [exp] 320 / 5e-110 AT3G15820 326 / 2e-112 REDUCED OLEATE DESATURATION 1, phosphatidic acid phosphatase-related / PAP2-related (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0525 [poplar] [flax] pap2 PF14378 [poplar] [flax] PAP2_3 PAP2 superfamily
Representative CDS sequence Show only first row Show all	>Potri.003G032200.1 pacid=42784739 polypeptide=Potri.003G032200.1.p locus=Potri.003G032200 ID=Potri.003G032200.1.v4.1 annot-version=v4.1 ATGAAAACAATCTCCGAAGCCGGCGCCGCCGCAACTATCAGCCCCACGGTTCCCACCTCATATAAGCGCAAACAGATCAACGTTAATGGCGTCGACATGG AGAATAAAAATAAGCAAACTAATGGCATTACCACCGATGGAGCTGCCAACGGTTTCTATGGTGTTGACCCGTCTTTCTTGAAATGGACTTTGCGTGATGT GGTCAATGTGGCTAAGCACCATTGGCTCCCCTGCTTTTTGGGATTCGGGTTGTTGTTTTTCATGGCCGTGGAGTACACGCTCCGCATGGTGCCCTCATCG TCGCCGCCGTTTGACTTGGGGTTTGTTGTCACGCGCCGCCTCCATGGGTTGCTGTCCTCGTGGCCGGAGCTCAATACTTCGCTTGCTGGTCTGAATACGG TATTTGTGGGTATGCAAACAGCATATATCCTATGGACGTGGCTAGTAGAAGGCAGACCAAGAGCAACAATCTCTGCGTTGTTTATGTTCACTTGCCGTGG GATTCTGGGTTTCTCCACTCAGCTTCCATTGCCGGAGGAATTTCTGGGGTCAGGAGCGGACTTTCCAGTAGGAAATGTGTCGTTTTTCCTGTTTTTCTCA GGCCATGTTGCAGGGTCATTGATTGCATCGCTGGACATGAGAAGGATGCAGAGATGGGAATTGGCTCGGGCATTTGATTTGCTCAATGTTCTGCAAGTTA TTAGGCTGCTTGGAACTAGGGGCCATTATACCATAGATTTAGCTGTTGGTGTAGGTGCTGGAGTTCTCTTCGATTCGCTAGCTGGAAAATATGTTGAGTG GAAACAGAGAAAACCAATTGCTAATACTGTCACTGTGAAGGACGGAAGGAGGCTTTTTTAG
AA sequence Show only first row Show all	>Potri.003G032200.1 pacid=42784739 polypeptide=Potri.003G032200.1.p locus=Potri.003G032200 ID=Potri.003G032200.1.v4.1 annot-version=v4.1 MKTISEAGAAATISPTVPTSYKRKQINVNGVDMENKNKQTNGITTDGAANGFYGVDPSFLKWTLRDVVNVAKHHWLPCFLGFGLLFFMAVEYTLRMVPSS SPPFDLGFVVTRRLHGLLSSWPELNTSLAGLNTVFVGMQTAYILWTWLVEGRPRATISALFMFTCRGILGFSTQLPLPEEFLGSGADFPVGNVSFFLFFS GHVAGSLIASLDMRRMQRWELARAFDLLNVLQVIRLLGTRGHYTIDLAVGVGAGVLFDSLAGKYVEWKQRKPIANTVTVKDGRRLF

---

DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT3G15820		ROD1	REDUCED OLEATE DESATURATION 1,...		Potri.003G032200 [exp]	0	1
AT5G18140			Chaperone DnaJ-domain superfam...		Potri.019G035100 [exp]	2.00	0.7652
AT1G26690			emp24/gp25L/p24 family/GOLD fa...		Potri.004G127200 [exp]	5.19	0.7823
AT1G49820		MTK1, ATMTK	5-methylthioribose kinase 1, S...		Potri.001G299700 [exp]	13.41	0.7095
AT5G21222			protein kinase family protein ...		Potri.014G161400 [exp]	18.54	0.7158
AT4G29080	AUX_IAA	IAA27, PAP2	indole-3-acetic acid inducible...		Potri.006G161400 [exp]	19.97	0.6683
AT5G12470			Protein of unknown function (D...		Potri.001G256300 [exp]	22.44	0.7040
AT5G23130			Peptidoglycan-binding LysM dom...		Potri.012G036600 [exp]	25.98	0.6617
AT2G40620	bZIP	AtbZIP18	Basic-leucine zipper (bZIP) tr...		Potri.013G091400 [exp]	27.00	0.6974
AT1G48120			hydrolases;protein serine/thre...		Potri.004G068801 [exp]	27.22	0.6725
AT4G16146			cAMP-regulated phosphoprotein ...		Potri.008G108201 [exp]	30.33	0.7116

Compare expression of checked genes

Potri.003G032200 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.