Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol	ETR1.2
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G66340 1228 / 0 AtETR1, EIN1, ETR1 ETHYLENE RESPONSE 1, ETHYLENE RESPONSE, ETHYLENE INSENSITIVE 1, Signal transduction histidine kinase, hybrid-type, ethylene sensor (.1) AT2G40940 800 / 0 ERS1 ethylene response sensor 1 (.1) AT3G04580 439 / 9e-144 EIN4 ETHYLENE INSENSITIVE 4, Signal transduction histidine kinase, hybrid-type, ethylene sensor (.1.2) AT3G23150 427 / 1e-138 ETR2 ethylene response 2, Signal transduction histidine kinase, hybrid-type, ethylene sensor (.1) AT1G04310 291 / 2e-88 ERS2 ethylene response sensor 2 (.1) AT5G10720 138 / 2e-33 CKI2, AHK5 CYTOKININ INDEPENDENT 2, histidine kinase 5 (.1) AT1G27320 135 / 1e-32 AHK3 histidine kinase 3 (.1) AT5G35750 133 / 6e-32 AHK2 histidine kinase 2 (.1) AT2G01830 132 / 2e-31 CRE1, AHK4, WOL1, WOL, ATCRE1 WOODEN LEG 1, WOODEN LEG, CYTOKININ RESPONSE 1, ARABIDOPSIS HISTIDINE KINASE 4, CHASE domain containing histidine kinase protein (.1.2.3) AT2G17820 130 / 9e-31 AHK1, ATHK1 histidine kinase 1 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G204200 [exp] 1357 / 0 AT1G66340 1216 / 0.0 ETHYLENE RESPONSE 1, ETHYLENE RESPONSE, ETHYLENE INSENSITIVE 1, Signal transduction histidine kinase, hybrid-type, ethylene sensor (.1) Potri.002G201500 [exp] 907 / 0 AT2G40940 897 / 0.0 ethylene response sensor 1 (.1) Potri.008G164400 [exp] 488 / 2e-162 AT3G23150 889 / 0.0 ethylene response 2, Signal transduction histidine kinase, hybrid-type, ethylene sensor (.1) Potri.010G074300 [exp] 471 / 8e-156 AT3G23150 877 / 0.0 ethylene response 2, Signal transduction histidine kinase, hybrid-type, ethylene sensor (.1) Potri.019G014300 [exp] 465 / 8e-154 AT3G04580 959 / 0.0 ETHYLENE INSENSITIVE 4, Signal transduction histidine kinase, hybrid-type, ethylene sensor (.1.2) Potri.013G044100 [exp] 460 / 8e-152 AT3G04580 960 / 0.0 ETHYLENE INSENSITIVE 4, Signal transduction histidine kinase, hybrid-type, ethylene sensor (.1.2) Potri.003G171000 [exp] 144 / 2e-35 AT1G27320 1425 / 0.0 histidine kinase 3 (.1) Potri.001G057400 [exp] 144 / 3e-35 AT1G27320 1384 / 0.0 histidine kinase 3 (.1) Potri.008G137900 [exp] 131 / 4e-31 AT2G01830 1390 / 0.0 WOODEN LEG 1, WOODEN LEG, CYTOKININ RESPONSE 1, ARABIDOPSIS HISTIDINE KINASE 4, CHASE domain containing histidine kinase protein (.1.2.3)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10020778 [exp] 1228 / 0 AT1G66340 1220 / 0.0 ETHYLENE RESPONSE 1, ETHYLENE RESPONSE, ETHYLENE INSENSITIVE 1, Signal transduction histidine kinase, hybrid-type, ethylene sensor (.1) Lus10007357 [exp] 1225 / 0 AT1G66340 1211 / 0.0 ETHYLENE RESPONSE 1, ETHYLENE RESPONSE, ETHYLENE INSENSITIVE 1, Signal transduction histidine kinase, hybrid-type, ethylene sensor (.1) Lus10031382 [exp] 1206 / 0 AT1G66340 1206 / 0.0 ETHYLENE RESPONSE 1, ETHYLENE RESPONSE, ETHYLENE INSENSITIVE 1, Signal transduction histidine kinase, hybrid-type, ethylene sensor (.1) Lus10013415 [exp] 850 / 0 AT2G40940 907 / 0.0 ethylene response sensor 1 (.1) Lus10010310 [exp] 848 / 0 AT2G40940 904 / 0.0 ethylene response sensor 1 (.1) Lus10021212 [exp] 448 / 6e-147 AT3G23150 890 / 0.0 ethylene response 2, Signal transduction histidine kinase, hybrid-type, ethylene sensor (.1) Lus10021880 [exp] 447 / 1e-146 AT3G23150 857 / 0.0 ethylene response 2, Signal transduction histidine kinase, hybrid-type, ethylene sensor (.1) Lus10022203 [exp] 445 / 1e-145 AT3G23150 882 / 0.0 ethylene response 2, Signal transduction histidine kinase, hybrid-type, ethylene sensor (.1) Lus10006574 [exp] 444 / 8e-145 AT3G04580 957 / 0.0 ETHYLENE INSENSITIVE 4, Signal transduction histidine kinase, hybrid-type, ethylene sensor (.1.2) Lus10041159 [exp] 441 / 5e-144 AT3G23150 851 / 0.0 ethylene response 2, Signal transduction histidine kinase, hybrid-type, ethylene sensor (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0304 [poplar] [flax] CheY PF00072 [poplar] [flax] Response_reg Response regulator receiver domain CL0025 [poplar] [flax] His_Kinase_A PF00512 [poplar] [flax] HisKA His Kinase A (phospho-acceptor) domain CL0161 [poplar] [flax] GAF PF01590 [poplar] [flax] GAF GAF domain CL0025 [poplar] [flax] His_Kinase_A PF02518 [poplar] [flax] HATPase_c Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase
Representative CDS sequence Show only first row Show all	>Potri.003G032300.7 pacid=42786260 polypeptide=Potri.003G032300.7.p locus=Potri.003G032300 ID=Potri.003G032300.7.v4.1 annot-version=v4.1 ATGGAGTCTTGCAATTGCATTGAACCGCAATGGCCAGCTGAAGAGCTGTTGATGAAGTATCAATATATATCAGATTTCTTTATTGCACTGGCCTATTTCT CTATTCCTTTAGAGCTCATCTACTTTGTTAAGAAATCTGCCGTGTTTCCGTATAGATGGGTGCTTGTCCAGTTTGGTGCTTTTATAGTTCTTTGTGGTGC AACTCATCTTATTAGCCTTTGGACTTTTAGTATGCATTCACGAACTGTGGCTGTTGTGATGACTATTTCCAAAGTCTTGACTGCGGTTGTGTCTTGTGCC ACTGCGCTTATGCTTGTGCATATTATTCCAGATCTTTTGAGTGTTAAGACTAGAGAGTTGTTTCTGAAGAATAAAGCTGCGGAACTAGATAGAGAGATGG GTTTGATACGTACACAAGAGGAGACGGGTAGGCATGTGAGGATGTTGACTCATGAAATCAGAAGCACTCTTGACAGACATACTATATTGAAGACTACTCT TGTTGAGTTGGGTAGGACATTGGTGTTGGAAGAATGTGCATTGTGGATGCCAACTCGTACTGGGTTGGAGCTTCAACTTTCATACACTCTTCGTCAGCAG AACCCAGTTGGATATACTGTACCTATCCAACTTCCGGTGATCAATCAAGTATTCAGTAGTAACCGTGCTATGAAAATTTCACCAAATTCTCCGGTGGCTA GAATACGGCCTTTTGCTGGAAAATACATGCCTGGAGAGGTGGTTGCTGTTCGTGTCCCTCTCCTTCATCTCTCTAATTTCCAAATTAATGACTGGCCTGA ACTTTCTACCAGGCGCTATGCTTTGATGGTTTTAATGCTTCCGTCAGATAGTGCAAGGCAGTGGCATGTTCATGAGTTGGAGCTTGTTGAAGTAGTTGCT GATCAGGTAGCTGTTGCTCTGTCACATGCTGCTATTCTAGAAGAGTCAATGAGGGCAAGGGACCTTCTTATGGACCAGAATGTTGCGCTTGATCATGCCA GGAGAGAAGCAGAAACAGCAATTCGTGCTCGCAATGATTTCTTGGCTGTTATGAACCATGAGATGAGAACTCCTATGCATGCAATTATTGCACTTTCCTC CTTGCTGCAGGAAACTGAGCTGACACCTGAGCAGCGTCTAATGGTTGAGACAATTCTTAAAAGTAGTAACCTTTTGGCCACTCTTATAAATGATGTATTG GATCTTTCAAGGCTTGAAGATGGCAGCCTTCAACTTGACTTGGGAACTTTTAATCTTCATGCCTTGTTCAGGGAGGTTCTTAATTTAATCAAGCCAATCG CATCTGTTAAAAAGTTGCATGTAACCTTAAATTTGGCTCCGGATTTACCAGAATGTGTCGTTGGTGATGAAAAACGACTAATGCAAACTATTTTAAATGT TGTTGGTAATGCTCTGAAGTTTTCCAAAGAGGGAAGCATCTCAATCACTGCATTTGTTGCAAAATCAGAATCTTTAAGAGATAGTCGAGCTCCTGACTTT TTTCCAGTGCCAAGTGATGATCACTTTTATTTGCGTGTACAGGTAAAAGATGCCGGACAAGGAGTTAATCCTCAGGAAATTCCCAAGTTGTTTACAAAAT TTGCACAAACTCAAACTTTGGCAACCAGAAATTCCAGTGGCAGTGGACTTGGCCTTGCAATTTGTAAGAGATTTGTAAATCTTATGGAGGGACATATTTG GATTGAAAGTGAAGGTTTAGGCAAAGGATGTACAGTTATCTTCATTGTAAAGCTTTGCATTCCTGGGCGCTCAAATGAATCTAAGAGTCCATTCCTACCT AAAGCAAATCATGGGCAGGCAGGTTTTCCAGGACTCAAAGTTCTTGTCTTGGATTATAATGGTGTTAGCAGGATGGTGACCAAAGGACTTCTTGTTCATC TAGGGTGCGACGTGACAACTGTAAGCTCAATTGATGAGTGCCTACATGTGGTATCTCAAGAACACAAGGTGTTGTTTATGGATGTGTGCATGCCTGATGG TTTTGAAGCTGCTGTCCGTTTACATGAAAAATTTACAAAACATCATGAAAGGCCGCTAATAGTGGCACTTACTGGAAACACAGACAAAGTGACCAAGGAG AACTGCATGAGGGTCGGTATGGACGGTGTTATACTGAAACCTGTATCTGTTGACAAGATGAGGAGTGTTTTATCGGACCTCCTCGAACATCGGGTCCTGT TTGAAGCCATGTAA
AA sequence Show only first row Show all	>Potri.003G032300.7 pacid=42786260 polypeptide=Potri.003G032300.7.p locus=Potri.003G032300 ID=Potri.003G032300.7.v4.1 annot-version=v4.1 MESCNCIEPQWPAEELLMKYQYISDFFIALAYFSIPLELIYFVKKSAVFPYRWVLVQFGAFIVLCGATHLISLWTFSMHSRTVAVVMTISKVLTAVVSCA TALMLVHIIPDLLSVKTRELFLKNKAAELDREMGLIRTQEETGRHVRMLTHEIRSTLDRHTILKTTLVELGRTLVLEECALWMPTRTGLELQLSYTLRQQ NPVGYTVPIQLPVINQVFSSNRAMKISPNSPVARIRPFAGKYMPGEVVAVRVPLLHLSNFQINDWPELSTRRYALMVLMLPSDSARQWHVHELELVEVVA DQVAVALSHAAILEESMRARDLLMDQNVALDHARREAETAIRARNDFLAVMNHEMRTPMHAIIALSSLLQETELTPEQRLMVETILKSSNLLATLINDVL DLSRLEDGSLQLDLGTFNLHALFREVLNLIKPIASVKKLHVTLNLAPDLPECVVGDEKRLMQTILNVVGNALKFSKEGSISITAFVAKSESLRDSRAPDF FPVPSDDHFYLRVQVKDAGQGVNPQEIPKLFTKFAQTQTLATRNSSGSGLGLAICKRFVNLMEGHIWIESEGLGKGCTVIFIVKLCIPGRSNESKSPFLP KANHGQAGFPGLKVLVLDYNGVSRMVTKGLLVHLGCDVTTVSSIDECLHVVSQEHKVLFMDVCMPDGFEAAVRLHEKFTKHHERPLIVALTGNTDKVTKE NCMRVGMDGVILKPVSVDKMRSVLSDLLEHRVLFEAM

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT1G66340		AtETR1, EIN1, E...	ETHYLENE RESPONSE 1, ETHYLENE ...		Potri.003G032300 [exp]	0	1	ETR1.2
AT4G34280			transducin family protein / WD...		Potri.009G092500 [exp]	6.32	0.7235
AT4G34100			RING/U-box superfamily protein...		Potri.009G099400 [exp]	6.63	0.7331
AT5G01270		CPL2, ATCPL2	carboxyl-terminal domain (ctd)...		Potri.006G099302 [exp]	14.07	0.7361
AT5G53450		ORG1	OBP3-responsive gene 1 (.1.2)		Potri.015G016300 [exp]	17.60	0.7232
AT1G74580			Pentatricopeptide repeat (PPR)...		Potri.010G234500 [exp]	18.89	0.7265
AT4G34370		ATARI1	ARABIDOPSIS ARIADNE 1, ARIADNE...		Potri.009G111200 [exp]	19.49	0.6926
AT3G62650			unknown protein		Potri.014G124900 [exp]	21.97	0.6907
AT1G10240	FAR1_related	FRS11	FAR1-related sequence 11 (.1)		Potri.008G108800 [exp]	23.32	0.7031
AT1G08760			Plant protein of unknown funct...		Potri.007G131600 [exp]	25.45	0.6962
AT5G05170		IXR1, CEV1, ATH...	ISOXABEN RESISTANT 1, CONSTIT...		Potri.009G060800 [exp]	25.69	0.6469	CESA4.5

Compare expression of checked genes

Potri.003G032300 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.