Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G80100 203 / 5e-68 AHP6 histidine phosphotransfer protein 6 (.1.2) AT3G21510 106 / 7e-30 ATHP3, AHP1 histidine-containing phosphotransmitter 1 (.1) AT1G03430 104 / 4e-29 AHP5 histidine-containing phosphotransfer factor 5 (.1) AT5G39340 100 / 2e-27 ATHP2, AHP3 ARABIDOPSIS THALIANA HISTIDINE-CONTAINING PHOSPHOTRANSMITTER 2, histidine-containing phosphotransmitter 3 (.1) AT3G29350 98 / 1e-26 ATHP1, AHP2 histidine-containing phosphotransmitter 2 (.1.2) AT3G16360 77 / 1e-18 AHP4 HPT phosphotransmitter 4 (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G191900 [exp] 232 / 2e-79 AT1G80100 204 / 2e-68 histidine phosphotransfer protein 6 (.1.2) Potri.016G113500 [exp] 113 / 1e-32 AT1G03430 210 / 1e-70 histidine-containing phosphotransfer factor 5 (.1) Potri.006G098200 [exp] 108 / 8e-31 AT1G03430 207 / 7e-70 histidine-containing phosphotransfer factor 5 (.1) Potri.010G027100 [exp] 107 / 2e-30 AT3G21510 206 / 5e-69 histidine-containing phosphotransmitter 1 (.1) Potri.013G028300 [exp] 107 / 2e-30 AT3G21510 183 / 2e-60 histidine-containing phosphotransmitter 1 (.1) Potri.014G136200 [exp] 107 / 2e-30 AT1G03430 163 / 2e-52 histidine-containing phosphotransfer factor 5 (.1) Potri.005G040400 [exp] 101 / 8e-28 AT3G21510 181 / 1e-59 histidine-containing phosphotransmitter 1 (.1) Potri.008G197600 [exp] 100 / 2e-27 AT3G21510 193 / 3e-64 histidine-containing phosphotransmitter 1 (.1) Potri.006G236300 [exp] 80 / 2e-19 AT3G16360 199 / 1e-66 HPT phosphotransmitter 4 (.1.2)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10011487 [exp] 216 / 3e-72 AT1G80100 194 / 6e-64 histidine phosphotransfer protein 6 (.1.2) Lus10023127 [exp] 198 / 4e-66 AT1G80100 178 / 5e-58 histidine phosphotransfer protein 6 (.1.2) Lus10012777 [exp] 105 / 4e-29 AT3G21510 216 / 5e-73 histidine-containing phosphotransmitter 1 (.1) Lus10033999 [exp] 104 / 4e-29 AT3G21510 216 / 3e-73 histidine-containing phosphotransmitter 1 (.1) Lus10000926 [exp] 90 / 2e-23 AT3G21510 181 / 3e-59 histidine-containing phosphotransmitter 1 (.1) Lus10002256 [exp] 84 / 4e-21 AT3G21510 154 / 3e-49 histidine-containing phosphotransmitter 1 (.1) Lus10038280 [exp] 84 / 5e-21 AT3G16360 225 / 4e-77 HPT phosphotransmitter 4 (.1.2) Lus10035596 [exp] 81 / 8e-20 AT3G16360 103 / 5e-29 HPT phosphotransmitter 4 (.1.2) Lus10003256 [exp] 79 / 4e-19 AT1G03430 105 / 1e-29 histidine-containing phosphotransfer factor 5 (.1) Lus10025821 [exp] 79 / 6e-19 AT3G16360 226 / 4e-77 HPT phosphotransmitter 4 (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF01627 [poplar] [flax] Hpt Hpt domain
Representative CDS sequence Show only first row Show all	>Potri.003G032400.2 pacid=42785135 polypeptide=Potri.003G032400.2.p locus=Potri.003G032400 ID=Potri.003G032400.2.v4.1 annot-version=v4.1 ATGCTTGGGTGGGGTGTGGATCGGTTACGTGCCGATATGAACCGTTTGCTGGCAATGCTATTCCACCAGGGAGTGCTAGATGAGCAATTCTTGCAGCTCC AGCAACTTGAGGATGAAAGCTCTCCAAACTTCGTATCAGAAGTGGTCAATATCTACTTCCATGAATCCGAGAAACTTTTACGGAATCTCAGAGGCCTCTT GATGGATAGAGAGTTCTCGGACTACAAGAAAATGGGAACCCATTTGAATCAGCTCATTGGAAGCAGCTCCAGCATTGGTGCCAAAAGAGTCAGAAATGTG TGCGTTTCCTTTCGAGCCGCTTCTGAGCAAAACAGCCGCGCTGGGTGCTTGAGAGCTTTGGAGCTGCTAGAGCACGAGTACTGCTACCTCAAGAACAAGT TGCACGAACTGTTCCACATGGATCAACTGAGAGTACTGGCAGCTGGAGTGACGTATCCACCGCAGCATTGA
AA sequence Show only first row Show all	>Potri.003G032400.2 pacid=42785135 polypeptide=Potri.003G032400.2.p locus=Potri.003G032400 ID=Potri.003G032400.2.v4.1 annot-version=v4.1 MLGWGVDRLRADMNRLLAMLFHQGVLDEQFLQLQQLEDESSPNFVSEVVNIYFHESEKLLRNLRGLLMDREFSDYKKMGTHLNQLIGSSSSIGAKRVRNV CVSFRAASEQNSRAGCLRALELLEHEYCYLKNKLHELFHMDQLRVLAAGVTYPPQH

---

DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT1G80100		AHP6	histidine phosphotransfer prot...		Potri.003G032400 [exp]	0	1
					Potri.002G184550 [exp]	2.82	1.0000
AT3G23560		ALF5	ABERRANT LATERAL ROOT FORMATIO...		Potri.011G117200 [exp]	4.89	1.0000
AT4G16730		AtTPS02	terpene synthase 02 (.1)		Potri.019G046201 [exp]	5.74	0.9999
					Potri.011G073141 [exp]	6.32	1.0000
AT4G29280		LCR22	low-molecular-weight cysteine-...		Potri.001G044800 [exp]	7.74	0.9998
AT4G24340			Phosphorylase superfamily prot...		Potri.019G050200 [exp]	8.83	0.9998
AT3G23550			MATE efflux family protein (.1...		Potri.011G117400 [exp]	8.94	0.9999
AT5G13930		ATCHS, TT4, CHS	TRANSPARENT TESTA 4, CHALCONE ...		Potri.012G138800 [exp]	9.79	0.9993	CHSL2
AT3G51680		AtSDR2	short-chain dehydrogenase/redu...		Potri.006G206700 [exp]	10.77	0.9991	CTS2.9
AT3G25830		ATTPS-CIN	"terpene synthase-like sequenc...		Potri.019G022338 [exp]	14.07	0.9994

Compare expression of checked genes

Potri.003G032400 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.