Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol	Pt-PLD1.1
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G15730 1419 / 0 PLDALPHA1 phospholipase D alpha 1 (.1) AT1G52570 1416 / 0 PLDALPHA2 phospholipase D alpha 2 (.1) AT5G25370 1030 / 0 PLDALPHA3 phospholipase D alpha 3 (.1) AT2G42010 727 / 0 PLDBETA1 phospholipase D beta 1 (.1) AT4G00240 709 / 0 PLDBETA2 phospholipase D beta 2 (.1) AT4G11830 701 / 0 PLDGAMMA2 phospholipase D gamma 2 (.1.2) AT4G11840 695 / 0 PLDGAMMA3 phospholipase D gamma 3 (.1) AT4G11850 692 / 0 PLDGAMMA1, MEE54 maternal effect embryo arrest 54, phospholipase D gamma 1 (.1) AT4G35790 659 / 0 ATPLDDELTA ARABIDOPSIS THALIANA PHOSPHOLIPASE D DELTA, phospholipase D delta (.1.2.3) AT1G55180 589 / 0 PLDALPHA4, PLDEPSILON phospholipase D alpha 4 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G193000 [exp] 1549 / 0 AT1G52570 1412 / 0.0 phospholipase D alpha 2 (.1) Potri.018G131200 [exp] 1264 / 0 AT1G52570 1204 / 0.0 phospholipase D alpha 2 (.1) Potri.006G253900 [exp] 1154 / 0 AT3G15730 1144 / 0.0 phospholipase D alpha 1 (.1) Potri.014G074700 [exp] 710 / 0 AT2G42010 1464 / 0.0 phospholipase D beta 1 (.1) Potri.002G016100 [exp] 705 / 0 AT4G35790 1194 / 0.0 ARABIDOPSIS THALIANA PHOSPHOLIPASE D DELTA, phospholipase D delta (.1.2.3) Potri.002G152100 [exp] 704 / 0 AT2G42010 1438 / 0.0 phospholipase D beta 1 (.1) Potri.003G015000 [exp] 700 / 0 AT4G35790 1088 / 0.0 ARABIDOPSIS THALIANA PHOSPHOLIPASE D DELTA, phospholipase D delta (.1.2.3) Potri.005G246000 [exp] 697 / 0 AT4G35790 1170 / 0.0 ARABIDOPSIS THALIANA PHOSPHOLIPASE D DELTA, phospholipase D delta (.1.2.3) Potri.001G112100 [exp] 696 / 0 AT2G42010 1307 / 0.0 phospholipase D beta 1 (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10039806 [exp] 1471 / 0 AT3G15730 1389 / 0.0 phospholipase D alpha 1 (.1) Lus10018575 [exp] 1468 / 0 AT3G15730 1388 / 0.0 phospholipase D alpha 1 (.1) Lus10033706 [exp] 1464 / 0 AT3G15730 1382 / 0.0 phospholipase D alpha 1 (.1) Lus10031634 [exp] 1463 / 0 AT3G15730 1380 / 0.0 phospholipase D alpha 1 (.1) Lus10041787 [exp] 1106 / 0 AT1G52570 1087 / 0.0 phospholipase D alpha 2 (.1) Lus10006819 [exp] 707 / 0 AT2G42010 1465 / 0.0 phospholipase D beta 1 (.1) Lus10005782 [exp] 705 / 0 AT2G42010 1456 / 0.0 phospholipase D beta 1 (.1) Lus10041855 [exp] 696 / 0 AT4G35790 1280 / 0.0 ARABIDOPSIS THALIANA PHOSPHOLIPASE D DELTA, phospholipase D delta (.1.2.3) Lus10012699 [exp] 690 / 0 AT4G35790 1075 / 0.0 ARABIDOPSIS THALIANA PHOSPHOLIPASE D DELTA, phospholipase D delta (.1.2.3) Lus10001293 [exp] 687 / 0 AT4G35790 1071 / 0.0 ARABIDOPSIS THALIANA PHOSPHOLIPASE D DELTA, phospholipase D delta (.1.2.3)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0154 [poplar] [flax] C2 PF00168 [poplar] [flax] C2 C2 domain CL0479 [poplar] [flax] PLD PF00614 [poplar] [flax] PLDc Phospholipase D Active site motif CL0479 [poplar] [flax] PF12357 [poplar] [flax] PLD_C Phospholipase D C terminal
Representative CDS sequence Show only first row Show all	>Potri.003G032800.1 pacid=42785094 polypeptide=Potri.003G032800.1.p locus=Potri.003G032800 ID=Potri.003G032800.1.v4.1 annot-version=v4.1 ATGGCGCAGGTTTTGTTGCACGGGACCTTACATGTCACGATCTTTGAGGTGGATAAGCTTGGCGATGGTGGCGGGCATGGCTTCCTCCACAAGCTTGTGG AGAACATTGGGGAGAAGGTTGGTATTGGTGACGGAATTAGCAAACTCTATGCAACTATTGATCTGGAAAGGGCTAGAGTTGGGAGGACCAGAATCCTTGA AAAAGAAGCAACCAACCCCAGGTGGAATGAGTCTTTTCATATTTACTGTGCTCATATGGCTTCAAATATTGTTTTCACTGTGAAGGATGATAATCCAATT GGGGCAACCTTGATTGGAAGAGCATATATCCCTGTTCAAGAGATCGTAGATGGGGAAGAAATAGATAGATGGGTTGAGATGTTGGATGAAGACAAAAACC CGATTCAGTCAAGTTCCAAAATCCATGTGAAGCTACAATACTTTGATGTTACAAAAGACCGTAACTGGGGCGGTGGCATCAGAAGTGCAAAATATCCTGG GGTACCTTATACATTCTACCCTCAGAGACAAGGGTGTAAGGTTTCCCTGTACCAAGATGCTCATGTACCAGACAAATTTATCCCCAAAATCCCTCTTGCT TCAGGAGAGGACTATAATCCCCACAGATGTTGGGAAGATGTTTTTGATTCAATCACAAATGCAAAACACTTCATCTACATCACTGGCTGGTCTGTTTATA CTGAAATCAGTCTGGTAAGGGATTCCAGGAGGCCAAAGCCTGGTGGGGACATCACTTTGGGTGAGCTGCTTAAGAAGAAGGCAAGCGAAGGTGTTAGGGT TCTTATACTCATTTGGGATGACAGAACCTCGGTTGATTTGCTGAAAAAGGATGGGCTGATGGCCACTCATGATGAAGAAACTGAGAACTACTTCCAAAAT ACTGATGTGCACTGTGTCTTGTGTCCCAGAAATCCTGATGATGGTGGAAGCATTGTTCAAGATCTGCAAATCTCTACCATGTTCACTCACCACCAAAAGA TTGTTGTAGTGGACAGTGCAATGCCTAATGGAGATTCCCAGAGGAGGAGAATTGTTAGTTATGTTGGGGGGATTGATCTTTGTGATGGGAGATATGATAC CCCCTTCCATTCCCTTTTTAGAACATTGGACACTGCACACCATGATGATTTCCATCAGCCCAACTTTACTGGTGCTTCGATTCAAAAAGGTGGTCCCAGA GAACCTTGGCATGACATCCATTCCCGGCTTGAGGGGCCTATTGCTTGGGATGTCTTGTTTAATTTTGAACAGAGATGGAAGAAGCAAGGCGGTAAAGATT TACTTGTTCAACTGAGAGAACTGGAAGATGTCATCATTCCACCATCTCCAGCTATGTTTCCTGATGATCATGAGACGTGGAATGTGCAGTTATTTAGATC CATTGATGGAGGAGCAGCATTTGGTTTCCCAGAGACACCTGAAGATGCTGCCAAAGCCGGGCTTGTCAGTGGAAAGGATAATATCATCGACCGAAGCATT CAGGATGCTTATGTCAATGCCATTCGACGTGCAAAGAATTTCATCTATATTGAGAACCAGTATTTTCTTGGGAGTTCTTTTAGCTGGAGTGCTGATGATA TTAAGCCGGAGGACATTAATGCTTTGCATCTAATTCCAAAGGAGCTTTCACTTAAGATAGTTAGCAAGATTGAGGCAGGGGAAAGGTTCACTGTTTATGT TGTTGTCCCAATGTGGCCAGAGGGAATACCAGAGAGTGGATCAGTTCAGGCAATATTAGATTGGCAGAGGAGGACATTGGAGATGATGTATAAAGATGTC ATCGAGGCTCTCAGAGCCAAGGGGCTTGAAGAAGATCCTCGGAACTACCTGACATTTTTCTGCCTTGGGAATCGTGAGGTGAAGAAAAGTGGAGAATATG AACCTTCAGAAAAACCAGAGCCTGATTCAGATTACATTAGGGCCCAGGAGGCCAGGCGCTTCATGATTTATGTTCATGCAAAGATGATGATTGTTGATGA CGAATACATCATTATTGGGTCGGCCAACATAAATCAAAGATCCATGGATGGTGCCAGGGACTCTGAGATAGCCATGGGAGGATACCAACCATATCACTTG GCAACCAGGCAGCCTGCACGAGGCCAGATCCATGGATTCCGCTTGGGATTATGGTATGAACACCTTGGCATGCTGGATGACACCTTCCTTCATCCAGAAA GCGAAGAATGCGTGACGAAGGTGAACCAGATTACTGACAAATATTGGGATTTGTATTCCAGTGAGACACTTGAGCATGATCTACCTGGTCATTTGCTCCG TTACCCTATTGGGGTTTCCAGCGAAGGAAATGTGACAGAACTGCCCGGAACTGAGTTCTTCCCTGACACAAAGGCTCGTGTTCTCGGTGCCAAATCTGAT TACATGCCTCCTATCCTTACAACTTAG
AA sequence Show only first row Show all	>Potri.003G032800.1 pacid=42785094 polypeptide=Potri.003G032800.1.p locus=Potri.003G032800 ID=Potri.003G032800.1.v4.1 annot-version=v4.1 MAQVLLHGTLHVTIFEVDKLGDGGGHGFLHKLVENIGEKVGIGDGISKLYATIDLERARVGRTRILEKEATNPRWNESFHIYCAHMASNIVFTVKDDNPI GATLIGRAYIPVQEIVDGEEIDRWVEMLDEDKNPIQSSSKIHVKLQYFDVTKDRNWGGGIRSAKYPGVPYTFYPQRQGCKVSLYQDAHVPDKFIPKIPLA SGEDYNPHRCWEDVFDSITNAKHFIYITGWSVYTEISLVRDSRRPKPGGDITLGELLKKKASEGVRVLILIWDDRTSVDLLKKDGLMATHDEETENYFQN TDVHCVLCPRNPDDGGSIVQDLQISTMFTHHQKIVVVDSAMPNGDSQRRRIVSYVGGIDLCDGRYDTPFHSLFRTLDTAHHDDFHQPNFTGASIQKGGPR EPWHDIHSRLEGPIAWDVLFNFEQRWKKQGGKDLLVQLRELEDVIIPPSPAMFPDDHETWNVQLFRSIDGGAAFGFPETPEDAAKAGLVSGKDNIIDRSI QDAYVNAIRRAKNFIYIENQYFLGSSFSWSADDIKPEDINALHLIPKELSLKIVSKIEAGERFTVYVVVPMWPEGIPESGSVQAILDWQRRTLEMMYKDV IEALRAKGLEEDPRNYLTFFCLGNREVKKSGEYEPSEKPEPDSDYIRAQEARRFMIYVHAKMMIVDDEYIIIGSANINQRSMDGARDSEIAMGGYQPYHL ATRQPARGQIHGFRLGLWYEHLGMLDDTFLHPESEECVTKVNQITDKYWDLYSSETLEHDLPGHLLRYPIGVSSEGNVTELPGTEFFPDTKARVLGAKSD YMPPILTT

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT3G15730		PLDALPHA1	phospholipase D alpha 1 (.1)		Potri.003G032800 [exp]	0	1	Pt-PLD1.1
AT4G23750	AP2_ERF	TMO3, CRF2	TARGET OF MONOPTEROS 3, cytoki...		Potri.001G094800 [exp]	1.41	0.9067
AT5G01820		PKS24, CIPK14, ...	SNF1-RELATED PROTEIN KINASE 3....		Potri.016G133900 [exp]	3.46	0.8748	Pt-CIPK14.1
AT1G58210		EMB1674	EMBRYO DEFECTIVE 1674, kinase ...		Potri.002G106400 [exp]	18.60	0.7999
AT5G62570			Calmodulin binding protein-lik...		Potri.012G077000 [exp]	18.97	0.8103
AT1G22360		ATUGT85A2, AT2	UDP-glucosyl transferase 85A2 ...		Potri.017G052300 [exp]	22.49	0.8899
AT4G00430		PIP1;4, TMP-C, ...	TRANSMEMBRANE PROTEIN C, PLASM...		Potri.010G191900 [exp]	23.51	0.8241
AT4G35160			O-methyltransferase family pro...		Potri.013G122400 [exp]	25.63	0.8698
AT2G03760		AtSOT12, AtSOT1...	ARABIDOPSIS THALIANA SULFOTRAN...		Potri.003G188933 [exp]	36.53	0.8575
AT3G47420		AtG3Pp1, ATPS3	Glycerol-3-phosphate permease ...		Potri.001G124200 [exp]	53.95	0.8396
AT1G17840		AtABCG11, WBC11...	DESPERADO, CUTICULAR DEFECT AN...		Potri.001G312300 [exp]	55.09	0.8645

Compare expression of checked genes

Potri.003G032800 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.