Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G21290 317 / 5e-90 dentin sialophosphoprotein-related (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.005G134850 [exp] 50 / 9e-08 ND /
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10006871 [exp] 374 / 9e-111 AT3G21290 480 / 2e-150 dentin sialophosphoprotein-related (.1) Lus10037611 [exp] 374 / 1e-110 AT3G21290 544 / 5e-174 dentin sialophosphoprotein-related (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF07303 [poplar] [flax] Occludin_ELL Occludin homology domain
Representative CDS sequence Show only first row Show all	>Potri.003G033100.1 pacid=42785474 polypeptide=Potri.003G033100.1.p locus=Potri.003G033100 ID=Potri.003G033100.1.v4.1 annot-version=v4.1 ATGTACGGAGGATCCTCCAAGCGCGGCGGCCGAGGAGGCGGCGGCTCTGGTCCTAGGCGCTCCTCCTTACCACCTCCTCCGCCTGTCCACCGCCCTACAC CAGCCTCCCGCCTCTCCCTTGGTTCCTCCAATAACAACCCCCGCAACAACCGTCCGGGTCCGGGTCCGATCAATGCCAAGTCATCTTCGTCTTCAAACCC GGGTGTCGAAGAGACCTTCTCTTTAATTCCGGGAAATAACCCACTTGCTTTTGCCATGATTATAAGGTTGGCACCTGACTTGGTGGATGAGATCAGAAGA ATTGAAGCTCAGGGTGGCACTGCTAGAATTAAGTTTGGTTCCATGGCTAATAACCCTGATGGGAATGTTATTGATGTGGGTGGTAAAGAATTCAGATTTA CATGGTCGAGGGAATTGGGTGACCTCTGTGACATATATGAAGAACGACAGGGTGGCGTAGATGGAAATGGTTTGCTTGTAGAATCTGGATGTGCCTGGCG GAAGGTCAATGTCCAACGTATCTTGGATGAGTCAACTAAGAACCATGTTAAGATGCTGTCAGAGGAAGCTGAACGCAAATTTAAATCTCGCAAAGCTATC GTGTTAGACCATGGAAACCCAGCCGCAAAGAGTCAAATAAAGCAATTAGCAGCTGTTGAGTCTAATCCATGGAGAACCTTTAAGCAAAAGAAAGAACCTC CATTTAAAAAGCGGAAAGTTGAGCCTCCCCAAGGTGGAGGCGGCTTCCCTAAATCCACCTATAAACCTGCACTGCCTTCAACTGCTATTGTGAAAGGTAG ACTCTCTTCTTCACCTCTACCATCCCCACCAGAACAATCTGGCGCTCCAGCATCTCCATTTGGAACTGGAAGCATCACTAAGCATCATGTGAGCACAGAA GAGTACATTCCTACCCAGATGAAAAATAAAGAGAATGCTGCTAGCTCAGAGAATGAAATCCCAGCCAGGGCTACTAGTTCTTTATGGGAGACAACCGGGC GCAAAGGGAACATGGGGGCCAAACCAATGGATTTGCAGAGTATGCTGGTTAATTTACTGATCCAGAACCCTAAAGGGATGAGCTTGAAGGCTTTGGAGAA AGCTGTTTCGGGTACAATTCCAAACTCTGCTAAGAAGATTGAGCCCATTATAAAAAAGATAGCAAATTTTCAAGCTCCAGGAAGATATATCTTGAAACCA GGAATGGAGTCAGAAAAATTCAAGAAACCTTCATCCGAAAGTGGAAGTTCTCCTGAAGACAACCATCAGCAAGCACATGCTCCTGAAGATAATTGTGGCC AGAGACCTGATCCAGAACCAAGATTTGCGGGGAAAAATCCTGCTGTTGCATCCAAGGAACTAGTTCAGTCAAACTCTAAACTTGGAGAAGAATCAAATGC ATTAGAAAAACGTGACATTGATCAGTCTTCGCCTGATTTGTTTGGTGAGAAGAAGGTTTCTGACAATAGTGAAGGGCAGGCAGGTAGCTCTAGTGATAGT GGAAGTGACAGCGACAGTGAGAGTGATAGCAGTGATAGTGGGAGTGACAGTGGAAGCCGCAGCAGGAGCAGGAGCCCAGTAGGAAGTGGAACTGGGAGTA GCAGTGACAGTGAAAGTGATGCTTCTTCCAACAGTAAGCAGGGTTCTGATGAGGATGTTGATATCATGACAAGTGATGATGACAAAGAACCCGGACATAA GTTGCAGACCGCTGAACCAGGATTATTGGCATCTCCTGATCCTTGGAGGTCTGTGCCGAATGGGATTGATGAGAAGCTAGATGGTAATAAATCTGCTGCA GTTGACATTGAGGGCCACGGATCTGCTGCAGTTGACATCGAGGGCCATGAATCTGATGCTGTTGAAATCGAGGGCCATGAATCTGATGCTGTTGAAATCG ATAAAGACTTGGCTGGTGATGAAAAGGACATTAAAATAACTAAAAATGATAGTTTGGTTTCCAGCAGAGAAGGTGAAAAACCTGTGCAAGGAGCAGAATC CACTTTTCATGATCATGATATGATTCAAGAGCGCCAAATGTTCATCGGAAACTTATTTGATGATGATGACAATATGGCTAGGGACAGCTCTAGGCATGAG CAGTCAGACAGCTCAGAGAGAACATCAAAAAGTAAATCAAAAAGGGGCCTTGATGTGAAGCCCTTTGACAGTAAATCTGAGCGTGTCAAAAGATTGAAAG CTGAAAGCTTGTCTCGAGTGCCCACTTCTAAGGGTAGGGACGCCCAGTTCTCAGGGAGTCCTCATGATAAACACAATGAAGACATGTACAAGGGCCCTGC CATTCAAGTGATGGATAGAGCTGATAAACAAGCAAGTGATTTTGGCTCAGAAAAGCTGTATAACCAGGCAATTTCTGGAAAATCTAATCCAGATTTTCAA CAATCAGGTCGGAGGTCTTCTGATCAAAATGCAAGGTTGAAAGCTCAGGAAGCTGCAAGCAGATCCAAACATGCTGAGGGCTCAGGAATTAGTTGTAAGT TCCCAGAAAAGGGTTCTTATGTGCATGAAGCGTTTTCTATTCATAGAGAAAAGGCTTCGAGAGATACTCAAAACGAGGATACTTTTTCGAAGGAGAAAAA GGTGCCAAGAAATTCCAAGGAAGGTGGTGCTGGAGGCAGACATTCAGCTCCCTTTGATGCCCATTACAGGAAACAAGGGGAAGCATTTGGAAGACCAAAG GATGCTGGACAAATTTCAAACTCAAATTTTGGGTTTTCACCAAAGGACTCCAACAGAGTTGACATGGAAAAGTACCCAGTTGTTAGTGGAAGAGGTCTCC ATAGAGAGCTTTCAGACTTGGAGTTAGGAGAACTCCGTGAGCCATTACTTGAGGAAACACCAGTTAAAAAACGGTTTGAAAGGAAAGGTTCTTTTAAACA CTCAGAGAACAAATCAAGCACTTCAGATAACTGTAATTCAGATATAAACAAGGGCAAATCTATTGGAAAGGTATCATTGGACTCAGGAAAGCCCTCACCT AACCTGAGTGCTGGAGTTAAGAGGTCCCCAGAACATCGTGTCGATGATTTAACAAGACCTAACCATAAAGCTATGCAGTCTCAGCCGCAACATGTTTCAA GTGTAGATAATCTTGATGTTGGATCTGGGTTCAGTAAGTTGGCTGACTCAAGTAGTAGATTAACACAGAATGAAACTAGTGCAAAGCTAGGAAATAGTAT GGAAGGCTATGGAGAAAGCCACAAGAAAGCCCCTCTCAGTGCACAGAAGCTTCATGAATCTAAATGTGGAACACTTCCCCACTCGATAAAGGAAAGTAAA ACACAACCATCTAATTTGATGGCTGACTTGATAAATGGACGGAAAGATACACTTATGACAGAGGATAGCAATAATGTTTCCAAGAAGAGGGAATCTTCTT CAGAGGATGACAGCTCTTCATATTCCAAGTATGAAAAGGATGAACCAGAGCTCAGAGGACCAATTAAGGATTTTTCTCAGTACCAAGAATATGTGCAGGA ATATCGTGATAAATATGATAGTTACTGCTCCTTGAACAGGATCCTAGAGAGCTACAGGAATGAGTTCCATAAACTGGGAAAGGACCTTGAATCTGCAAAA GGCAGGGATATGGATAGATATCATAACATCTTGGTGCAGTTGAAGGATTCTTATAGTCAATGTGGAATGAAACACAGACGACTGAAAAAAATATTCATAG TGCTCCATAAAGAACTAGAGCAACTTAAGCAGAGGATCAAGGACTTCGTGCCCTCGAATACAAAAGATTGA
AA sequence Show only first row Show all	>Potri.003G033100.1 pacid=42785474 polypeptide=Potri.003G033100.1.p locus=Potri.003G033100 ID=Potri.003G033100.1.v4.1 annot-version=v4.1 MYGGSSKRGGRGGGGSGPRRSSLPPPPPVHRPTPASRLSLGSSNNNPRNNRPGPGPINAKSSSSSNPGVEETFSLIPGNNPLAFAMIIRLAPDLVDEIRR IEAQGGTARIKFGSMANNPDGNVIDVGGKEFRFTWSRELGDLCDIYEERQGGVDGNGLLVESGCAWRKVNVQRILDESTKNHVKMLSEEAERKFKSRKAI VLDHGNPAAKSQIKQLAAVESNPWRTFKQKKEPPFKKRKVEPPQGGGGFPKSTYKPALPSTAIVKGRLSSSPLPSPPEQSGAPASPFGTGSITKHHVSTE EYIPTQMKNKENAASSENEIPARATSSLWETTGRKGNMGAKPMDLQSMLVNLLIQNPKGMSLKALEKAVSGTIPNSAKKIEPIIKKIANFQAPGRYILKP GMESEKFKKPSSESGSSPEDNHQQAHAPEDNCGQRPDPEPRFAGKNPAVASKELVQSNSKLGEESNALEKRDIDQSSPDLFGEKKVSDNSEGQAGSSSDS GSDSDSESDSSDSGSDSGSRSRSRSPVGSGTGSSSDSESDASSNSKQGSDEDVDIMTSDDDKEPGHKLQTAEPGLLASPDPWRSVPNGIDEKLDGNKSAA VDIEGHGSAAVDIEGHESDAVEIEGHESDAVEIDKDLAGDEKDIKITKNDSLVSSREGEKPVQGAESTFHDHDMIQERQMFIGNLFDDDDNMARDSSRHE QSDSSERTSKSKSKRGLDVKPFDSKSERVKRLKAESLSRVPTSKGRDAQFSGSPHDKHNEDMYKGPAIQVMDRADKQASDFGSEKLYNQAISGKSNPDFQ QSGRRSSDQNARLKAQEAASRSKHAEGSGISCKFPEKGSYVHEAFSIHREKASRDTQNEDTFSKEKKVPRNSKEGGAGGRHSAPFDAHYRKQGEAFGRPK DAGQISNSNFGFSPKDSNRVDMEKYPVVSGRGLHRELSDLELGELREPLLEETPVKKRFERKGSFKHSENKSSTSDNCNSDINKGKSIGKVSLDSGKPSP NLSAGVKRSPEHRVDDLTRPNHKAMQSQPQHVSSVDNLDVGSGFSKLADSSSRLTQNETSAKLGNSMEGYGESHKKAPLSAQKLHESKCGTLPHSIKESK TQPSNLMADLINGRKDTLMTEDSNNVSKKRESSSEDDSSSYSKYEKDEPELRGPIKDFSQYQEYVQEYRDKYDSYCSLNRILESYRNEFHKLGKDLESAK GRDMDRYHNILVQLKDSYSQCGMKHRRLKKIFIVLHKELEQLKQRIKDFVPSNTKD

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT3G21290			dentin sialophosphoprotein-rel...		Potri.003G033100 [exp]	0	1
AT5G22450			unknown protein		Potri.010G238400 [exp]	1.00	0.9426
AT4G08350		GTA2, GTA02	global transcription factor gr...		Potri.009G124200 [exp]	3.00	0.9196
AT1G05910			cell division cycle protein 48...		Potri.007G127900 [exp]	5.09	0.9012
AT4G09980		EMB1691	EMBRYO DEFECTIVE 1691, Methylt...		Potri.015G147200 [exp]	5.47	0.9064
AT3G26730			RING/U-box superfamily protein...		Potri.014G145300 [exp]	5.65	0.9042
AT3G11540		SPY	SPINDLY, Tetratricopeptide rep...		Potri.006G208900 [exp]	6.32	0.9038	Pt-SPY.2
AT1G55325		MAB2, GCT	MACCHI-BOU 2, GRAND CENTRAL, R...		Potri.001G004200 [exp]	6.48	0.9050
AT5G20490		XI-17, ATXIK, X...	MYOSIN XI-17, MYOSIN XI K, Myo...		Potri.001G199200 [exp]	6.92	0.9108	MYA1.1
AT5G64390		HEN4	HUA ENHANCER 4, RNA-binding KH...		Potri.017G042500 [exp]	8.66	0.8832
AT2G27100	C2H2ZnF	SE	C2H2 zinc-finger protein SERRA...		Potri.004G196400 [exp]	10.24	0.8984

Compare expression of checked genes

Potri.003G033100 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.