Plant FIBer expression Database

Potri.003G033300 [POPLAR]


External link
JGI Phytozome v13PopgenieAspWood                  
Symbol
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT4G19160 523 / 0 unknown protein
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Potri.001G193400
[exp]
806 / 0 AT4G19160 516 / 0.0 unknown protein
Potri.001G027600
[exp]
56 / 4e-08 ND /
Potri.003G196200
[exp]
44 / 0.0002 ND /
Flax homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10038244
[exp]
472 / 6e-165 AT4G19160 375 / 7e-127 unknown protein
Lus10025855
[exp]
378 / 3e-130 AT4G19160 303 / 3e-101 unknown protein
Lus10024153
[exp]
58 / 7e-09 ND 49 / 5e-06
PFAM info
Clan ID Clan name Pfam ID Pfam name Pfam description
CL0125 Peptidase_CA PF13369 Transglut_core2 Transglutaminase-like superfamily
CL0020 TPR PF13371 TPR_9 Tetratricopeptide repeat
Representative CDS sequence
>Potri.003G033300.1 pacid=42786977 polypeptide=Potri.003G033300.1.p locus=Potri.003G033300 ID=Potri.003G033300.1.v4.1 annot-version=v4.1
ATGCTGCGTGATTCACTCATCACTGTTGCTACTGCAACAACCATGCCGCCGCCACCACCAGCACCTTCATCTCATGTTTTGCCCATCAGGTATGATCATG
ATCAACACCGGCGTTGGAGGAGAAGAAATGGGAATGTTATTGTTTCAGTTTCAGCTTCAGCTACCCCTCTTTCAATCAATCAGACGACTATGGACTCATC
TTCCCGTCGTCTCAAAACTTATCAGGAGGTTGTCAAGTCCGCAAGGGAAAAGTTCACCCAGGAATTCTCCTTCCAATCCAAGGACAAAGACATTTCTCTT
GCTAAGGCTTTGCTGTACATTGCATCAGAAGATGAGGCATTTATCGCTCTCAATCAAGAGATGGATGCTTGCTCACTCCTGAATGAGAAGAGAGATGTTT
CAGTTGCATCGAATGCCCAGGAGTGGGATTGTGTGGAGCAGATGCCTTTGGCTGGAAAGACAATAAGCGAGTGGGTCAGTGAATTGGACAACATCACCAA
GGAGGTCGAAGCAGAGCTAGTTTCAAGAGACATAGGTTGCCATTTGGTTGAACTTTTGGATTCAGTGAATCTAGTCCTTTTTGAGTTGAGAGGCTTCAAA
AGATCACCTGTTGTTGTAGATTCAAAGTATTCATACTTGCACACAGTATTAAGCACCAGATGTGGCAGTGCAATTTTGCTTAGTATAATTTACATTGAAG
TCTGTAGACGACTTGATCTGACCATTGTGGGATCTCGAGTTGGGGAAGATTTTTTGATATGGCCCCAAATGGGGAACCCAGAGGAGCTCTTCAAGGTAAC
TTCAGGGCACAGCTTGTTTGCAATTGTCAACGGAAGGTGTGTTGAGGACCCTAGATCAAAGGCATCGGATTTAACTGGAAACTCTCTTTTGGGACTTGAG
ATAGCTACAAAACGAGACATTATAGGGATTGCTCTGGCCAATTTGATTAGGCTTCACTGGAAACGTGCTTCAAGATCAAATCCTGGATTGATGCTGGCTT
CACCACTTAGGCATGCTCATAATACTGATGAAAAACTTATCAAGGTCCATAGTTCAAGTATTCCTTTGCTTCGGCCTCAAGATCTTAGGCTGGCTGTCAT
GGCTTCGGAAAGATTGTTGATTCTGCAACCGCATAATTGGGCTTTGAGGAGAGACCATGGCATGATGCTGTACTATAACAGGAAATATGGTCAGGCAGTG
CAAGAGCTTAGCATTTGCATGGCATTTGCTCCAGAAGAAGAGGCGAAAGTCCTAGAAGCATTTGTTGAGAAATTGCACTTGTTGCGGCTTGAATCATCAT
GGAAGTCTTTGGGACACACTGGTCAGCTAACAGTTCCTTGA
AA sequence
>Potri.003G033300.1 pacid=42786977 polypeptide=Potri.003G033300.1.p locus=Potri.003G033300 ID=Potri.003G033300.1.v4.1 annot-version=v4.1
MLRDSLITVATATTMPPPPPAPSSHVLPIRYDHDQHRRWRRRNGNVIVSVSASATPLSINQTTMDSSSRRLKTYQEVVKSAREKFTQEFSFQSKDKDISL
AKALLYIASEDEAFIALNQEMDACSLLNEKRDVSVASNAQEWDCVEQMPLAGKTISEWVSELDNITKEVEAELVSRDIGCHLVELLDSVNLVLFELRGFK
RSPVVVDSKYSYLHTVLSTRCGSAILLSIIYIEVCRRLDLTIVGSRVGEDFLIWPQMGNPEELFKVTSGHSLFAIVNGRCVEDPRSKASDLTGNSLLGLE
IATKRDIIGIALANLIRLHWKRASRSNPGLMLASPLRHAHNTDEKLIKVHSSSIPLLRPQDLRLAVMASERLLILQPHNWALRRDHGMMLYYNRKYGQAV
QELSICMAFAPEEEAKVLEAFVEKLHLLRLESSWKSLGHTGQLTVP

DESeq2's median of ratios [POPLAR]

Mapped by: Order by: Show schematic diagram

Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol NWA:WTNWB:WTNWA:OE-ARK2NWB:OE-ARK2NWA:miRNA-ARK2NWB:miRNA-ARK2NW 0hrWT H20WT-NWTUA1dEY NWTUA1dEY+TUB15 NWTUA1dY+TUB9 NWPde NWNWA:WT GANWBWT GATW:WTTW:WT GANWA:OE-ARK2 GANWB:OE-ARK2 GATW:OE-ARK2TW:OE-ARK2 GANWA:miRNA-ARK2 GANWB:miRNA-ARK2 GATW:miRNA-ARK2TW:miRNA-ARK2 GATW 2hrTW 8hrTW 24hrTW 48hrTW 96hrTW 336hrWT ACC35S::etr1-1 H2035S::etr1-1 ACCLMX5::etr1-1 H20LMX5::etr1-1 ACCWT-TWTUA1dEY TWTUA1dEY+TUB15 TWTUA1dY+TUB9 TWPde TWOW:WTOW:WT GAOW:OE-ARK2OW:OE-ARK2 GAOW:miRNA-ARK2OW:miRNA-ARK2 GAOW 2hrOW 8hrOW 24hrOW 48hrOW 96hrOW 336hrRoot CTRRoot LongColdRoot LongDrougtRoot LongHeatRoot LongSaltRoot ShortColdRoot ShortDrougtRoot ShortHeatRoot ShortSaltPtr rootLeaf CTRLeaf LongColdLeaf LongDrougtLeaf LongHeatLeaf LongSaltLeaf ShortColdLeaf ShortDrougtLeaf ShortHeatLeaf ShortSaltPtr leafStem CTRStem LongColdStem LongDrougtStem LongHeatStem LongSaltStem ShortColdStem ShortDrougtStem ShortHeatStem ShortSaltPtr shootPtr xylemPtr phloemPtr fiberPtr vesselPtr fiber vessel ray
AT4G19160 unknown protein Potri.003G033300
[exp]
0 1
AT5G08110 nucleic acid binding;ATP-depen... Potri.012G063500
[exp]
2.82 0.8471
AT5G47800 Phototropic-responsive NPH3 fa... Potri.006G003000
[exp]
4.47 0.8249
AT5G37020 ARF ARF8, ATARF8 auxin response factor 8 (.1.2) Potri.017G141000
[exp]
7.48 0.8346
AT4G19600 CYCT1;4 Cyclin family protein (.1) Potri.008G150500
[exp]
13.56 0.8025
AT1G11910 ATAPA1, APA1 aspartic proteinase A1 (.1) Potri.005G002800
[exp]
13.96 0.8486
AT1G14610 VALRS, TWN2 VALYL TRNA SYNTHETASE, TWIN 2,... Potri.005G087850
[exp]
14.49 0.8129
AT1G05270 TraB family protein (.1) Potri.007G121800
[exp]
15.55 0.8156
AT2G47020 Peptide chain release factor 1... Potri.002G188200
[exp]
16.12 0.8712
AT4G32770 ATSDX1, VTE1 tocopherol cyclase, chloroplas... Potri.006G240100
[exp]
16.97 0.8061
AT1G04080 PRP39 Tetratricopeptide repeat (TPR)... Potri.002G257100
[exp]
24.37 0.7827

Potri.003G033300 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.