Plant FIBer expression Database

Potri.003G033450 [POPLAR]


External link
JGI Phytozome v13PopgenieAspWood                  
Symbol
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT3G45890 45 / 1e-05 RUS1 ROOT UVB SENSITIVE 1, Protein of unknown function, DUF647 (.1)
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Potri.001G193300
[exp]
88 / 5e-20 AT3G45890 671 / 0.0 ROOT UVB SENSITIVE 1, Protein of unknown function, DUF647 (.1)
Potri.014G007300
[exp]
42 / 1e-05 ND /
Flax homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10001047
[exp]
52 / 2e-07 AT3G45890 653 / 0.0 ROOT UVB SENSITIVE 1, Protein of unknown function, DUF647 (.1)
Lus10001413
[exp]
51 / 3e-07 AT3G45890 658 / 0.0 ROOT UVB SENSITIVE 1, Protein of unknown function, DUF647 (.1)
PFAM info
Representative CDS sequence
>Potri.003G033450.1 pacid=42786495 polypeptide=Potri.003G033450.1.p locus=Potri.003G033450 ID=Potri.003G033450.1.v4.1 annot-version=v4.1
ATGATGGGAACTTGGCTGCTAGCCATTTCCATCACCAAGGCACCTCCGGATGTTATCCACGTTGGTTCCCACTTAATCAGATATGCAACATCAACGGAAG
CAACTGGGCTAGGCTTGTTCCTCATTTCTCTAAGGATGAGTTTGTCATGTCTCCAACATCACCTTCTTCGTCACTGTTTTTTTGTTAAGGAGTTATGGTA
TGCACAACTCTGTTTGTACGTCTCATGCTTCCTCAAGGGTTTCCTCATAGTGTTACCTTTGATTACTTGGATTATTCTCTTTGGCGAGCTGTCCAAGGCA
TTGCAAGCCAAGTTAGTGGCGTCCTTACCACCCAGAAATGTTAACTCCTGCTTTTCCTCATCCTTTTGTTTTCATTGGTGCCACTGCTGGAGCTGGATGC
TTTGCTACTGCTCTTATCCAGGCTGCTTCAAGGAGCTGTTTTTATGCCGGTTTTGCTGCTCAGAAACTTTGCTGAGTTTGGTGACATCGATCCACATGTT
TTGCAATCTGAAATCATGTCAATCCATTCAACTAAGGACTATAAATCCCTATCGTGAAAAAGCAAAGTTAGAACATCTTCAGGAGCGAGGTATGCAGCTG
CTGATAGTGAGCAGAGGTATGCAGCTGCTGATAGTGAGCAGAGGCTGCACCTGGGATCAAAGCTCAGTGATGTTGTAA
AA sequence
>Potri.003G033450.1 pacid=42786495 polypeptide=Potri.003G033450.1.p locus=Potri.003G033450 ID=Potri.003G033450.1.v4.1 annot-version=v4.1
MMGTWLLAISITKAPPDVIHVGSHLIRYATSTEATGLGLFLISLRMSLSCLQHHLLRHCFFVKELWYAQLCLYVSCFLKGFLIVLPLITWIILFGELSKA
LQAKLVASLPPRNVNSCFSSSFCFHWCHCWSWMLCYCSYPGCFKELFLCRFCCSETLLSLVTSIHMFCNLKSCQSIQLRTINPYREKAKLEHLQERGMQL
LIVSRGMQLLIVSRGCTWDQSSVML

DESeq2's median of ratios [POPLAR]

Mapped by: Order by: Show schematic diagram

Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol NWA:WTNWB:WTNWA:OE-ARK2NWB:OE-ARK2NWA:miRNA-ARK2NWB:miRNA-ARK2NW 0hrWT H20WT-NWTUA1dEY NWTUA1dEY+TUB15 NWTUA1dY+TUB9 NWPde NWNWA:WT GANWBWT GATW:WTTW:WT GANWA:OE-ARK2 GANWB:OE-ARK2 GATW:OE-ARK2TW:OE-ARK2 GANWA:miRNA-ARK2 GANWB:miRNA-ARK2 GATW:miRNA-ARK2TW:miRNA-ARK2 GATW 2hrTW 8hrTW 24hrTW 48hrTW 96hrTW 336hrWT ACC35S::etr1-1 H2035S::etr1-1 ACCLMX5::etr1-1 H20LMX5::etr1-1 ACCWT-TWTUA1dEY TWTUA1dEY+TUB15 TWTUA1dY+TUB9 TWPde TWOW:WTOW:WT GAOW:OE-ARK2OW:OE-ARK2 GAOW:miRNA-ARK2OW:miRNA-ARK2 GAOW 2hrOW 8hrOW 24hrOW 48hrOW 96hrOW 336hrRoot CTRRoot LongColdRoot LongDrougtRoot LongHeatRoot LongSaltRoot ShortColdRoot ShortDrougtRoot ShortHeatRoot ShortSaltPtr rootLeaf CTRLeaf LongColdLeaf LongDrougtLeaf LongHeatLeaf LongSaltLeaf ShortColdLeaf ShortDrougtLeaf ShortHeatLeaf ShortSaltPtr leafStem CTRStem LongColdStem LongDrougtStem LongHeatStem LongSaltStem ShortColdStem ShortDrougtStem ShortHeatStem ShortSaltPtr shootPtr xylemPtr phloemPtr fiberPtr vesselPtr fiber vessel ray
AT3G45890 RUS1 ROOT UVB SENSITIVE 1, Protein ... Potri.003G033450
[exp]
0 1
AT3G53090 UPL7 ubiquitin-protein ligase 7 (.1... Potri.016G096500
[exp]
6.00 0.7947
AT1G26160 Metal-dependent phosphohydrola... Potri.010G133101
[exp]
7.48 0.7252
AT5G61580 PFK4 phosphofructokinase 4 (.1.2) Potri.001G079450
[exp]
9.48 0.7899
AT3G44880 PAO, LLS1, ACD1 LETHAL LEAF-SPOT 1 HOMOLOG, AC... Potri.009G004100
[exp]
9.79 0.7856
AT1G02890 AAA-type ATPase family protein... Potri.002G205900
[exp]
16.24 0.7643
AT3G07100 AtSEC24A, SEC24... ENDOPLASMIC RETICULUM MORPHOLO... Potri.010G211100
[exp]
19.89 0.7150
Potri.002G261500
[exp]
20.59 0.7690
AT4G19600 CYCT1;4 Cyclin family protein (.1) Potri.010G090301
[exp]
21.07 0.6609
AT2G25850 PAPS2 poly(A) polymerase 2 (.1), pol... Potri.018G057200
[exp]
21.16 0.7506
AT5G42400 SDG25, ATXR7 ARABIDOPSIS TRITHORAX-RELATED7... Potri.005G260100
[exp]
21.21 0.7482

Potri.003G033450 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.