Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G51700 135 / 9e-40 DOF ADOF1, AtDof1. 7 DOF zinc finger protein 1 (.1) AT3G21270 125 / 1e-35 DOF ADOF2, AtDof3. 1 DOF zinc finger protein 2 (.1) AT5G60200 118 / 3e-32 DOF TMO6, AtDof5,3 TARGET OF MONOPTEROS 6 (.1) AT5G66940 116 / 6e-32 DOF AtDof5. 8 Dof-type zinc finger DNA-binding family protein (.1) AT3G50410 116 / 1e-31 DOF OBP1, AtDof3. 4 OBF binding protein 1 (.1) AT3G45610 116 / 1e-31 DOF DOF6, AtDof3,2 DOF transcription factor 6, Dof-type zinc finger DNA-binding family protein (.1) AT1G07640 114 / 1e-30 DOF OBP2, AtDof1. 1 Dof-type zinc finger DNA-binding family protein (.1.2.3) AT5G60850 113 / 7e-30 DOF OBP4, AtDof5. 4 OBF binding protein 4 (.1) AT5G65590 110 / 9e-29 DOF AtDof5,7 Dof-type zinc finger DNA-binding family protein (.1) AT4G38000 108 / 1e-28 DOF AtDof4,7 DNA binding with one finger 4.7 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.007G036400 [exp] 119 / 6e-33 AT3G50410 170 / 2e-52 OBF binding protein 1 (.1) Potri.005G131600 [exp] 118 / 2e-32 AT3G50410 126 / 3e-35 OBF binding protein 1 (.1) Potri.005G134200 [exp] 118 / 1e-31 AT5G60200 124 / 2e-33 TARGET OF MONOPTEROS 6 (.1) Potri.015G048300 [exp] 117 / 1e-31 AT5G60850 152 / 1e-43 OBF binding protein 4 (.1) Potri.007G038100 [exp] 117 / 3e-31 AT5G60200 122 / 5e-33 TARGET OF MONOPTEROS 6 (.1) Potri.005G149100 [exp] 116 / 1e-30 AT5G65590 197 / 1e-60 Dof-type zinc finger DNA-binding family protein (.1) Potri.012G063800 [exp] 115 / 1e-30 AT5G60850 137 / 9e-38 OBF binding protein 4 (.1) Potri.004G046600 [exp] 114 / 3e-30 AT1G28310 135 / 6e-37 Dof-type zinc finger DNA-binding family protein (.1.2) Potri.001G238400 [exp] 113 / 1e-29 AT3G55370 160 / 9e-47 OBF-binding protein 3 (.1.2.3)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10035504 [exp] 144 / 9e-44 AT1G51700 134 / 3e-40 DOF zinc finger protein 1 (.1) Lus10027797 [exp] 144 / 3e-43 AT1G51700 125 / 2e-36 DOF zinc finger protein 1 (.1) Lus10015425 [exp] 118 / 7e-32 AT5G60200 129 / 8e-36 TARGET OF MONOPTEROS 6 (.1) Lus10035503 [exp] 119 / 1e-31 AT3G22290 442 / 1e-155 Endoplasmic reticulum vesicle transporter protein (.1) Lus10014001 [exp] 115 / 1e-30 AT5G60200 128 / 1e-35 TARGET OF MONOPTEROS 6 (.1) Lus10034652 [exp] 114 / 1e-30 AT5G60850 162 / 4e-48 OBF binding protein 4 (.1) Lus10016566 [exp] 113 / 1e-29 AT3G55370 160 / 2e-46 OBF-binding protein 3 (.1.2.3) Lus10029458 [exp] 112 / 3e-29 AT3G55370 161 / 6e-47 OBF-binding protein 3 (.1.2.3) Lus10005956 [exp] 111 / 5e-29 AT3G55370 174 / 8e-52 OBF-binding protein 3 (.1.2.3) Lus10025707 [exp] 111 / 1e-28 AT5G65590 192 / 7e-59 Dof-type zinc finger DNA-binding family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF02701 [poplar] [flax] zf-Dof Dof domain, zinc finger
Representative CDS sequence Show only first row Show all	>Potri.003G034200.1 pacid=42786608 polypeptide=Potri.003G034200.1.p locus=Potri.003G034200 ID=Potri.003G034200.1.v4.1 annot-version=v4.1 ATGCAAGATCCATCGACAGCATTCCATACAATAAAGCCTCAGTTTCCAGAGCAAGAGCAACTCAAGTGCCCCCGCTGTGATTCCAACAACACCAAGTTCT GCTACTACAACAACTACAACCTCTCTCAGCCCCGTCATTTCTGCAAGAACTGCAAGAGATACTGGACCAAAGGTGGCGCTTTGAGAAACATCCCCGTCGG TGGTGGCAGCCGCAAGAACACTAAACGTTCCTCAAACACCAAACGCGCCAATCCCGACCCCAATCCCGACCCCGTTAAGCCAACCCGCCGGGTTGCGGAC TCCTCCTCCTCCTCAGCGACCTCGTCAACATCGGGACAGCAGCTGGCGGGTAATGGGAATCAGGATCCGACCCGCGTATATGGGGTGGAAGCGGATCCGG ACAGGAAGATACTGGATATGGGAGGGAGCTTCAGCTCGTTGTTGGCATCAAGCGGGCAGTTTGGGAGTATTTTTGAAGGGCTGGATTCAGGCGGGTCGGG CTTGAAAATGGTGCGGATGGGTGGGTTTGGGGAGGATTTGAATGCGGGTCCAAGTAGAGACCCGGGTTTGGATTTGCAAGGGAGCAGTAACAATAACACT ACTAATGATGGTGGTGGCGAGAGTTACTTGCAAGGTGGGGAGTGGGGAAATAGTAATAATGGGTGGCCTGGTCTTGCTATTTACACTCCAGGTTCTAGCT TCCAATAG
AA sequence Show only first row Show all	>Potri.003G034200.1 pacid=42786608 polypeptide=Potri.003G034200.1.p locus=Potri.003G034200 ID=Potri.003G034200.1.v4.1 annot-version=v4.1 MQDPSTAFHTIKPQFPEQEQLKCPRCDSNNTKFCYYNNYNLSQPRHFCKNCKRYWTKGGALRNIPVGGGSRKNTKRSSNTKRANPDPNPDPVKPTRRVAD SSSSSATSSTSGQQLAGNGNQDPTRVYGVEADPDRKILDMGGSFSSLLASSGQFGSIFEGLDSGGSGLKMVRMGGFGEDLNAGPSRDPGLDLQGSSNNNT TNDGGGESYLQGGEWGNSNNGWPGLAIYTPGSSFQ

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT1G51700	DOF	ADOF1, AtDof1. ...	DOF zinc finger protein 1 (.1)		Potri.003G034200 [exp]	0	1
AT2G41870			Remorin family protein (.1)		Potri.014G058900 [exp]	2.82	0.8686
AT3G11670		DGD1	DIGALACTOSYL DIACYLGLYCEROL DE...		Potri.006G203200 [exp]	3.74	0.8681
AT2G35940	HD	BLH1, EDA29	embryo sac development arrest ...		Potri.006G203000 [exp]	6.70	0.8664
AT5G14540			Protein of unknown function (D...		Potri.012G083200 [exp]	10.00	0.8483
AT2G35940	HD	BLH1, EDA29	embryo sac development arrest ...		Potri.001G216600 [exp]	13.67	0.8181
AT1G63850			BTB/POZ domain-containing prot...		Potri.004G154600 [exp]	19.89	0.8390
AT5G58900	MYB		Homeodomain-like transcription...		Potri.001G248800 [exp]	20.12	0.8038
AT5G15330		ATSPX4	ARABIDOPSIS THALIANA SPX DOMAI...		Potri.017G086600 [exp]	22.80	0.8376
AT5G41620			unknown protein		Potri.002G166600 [exp]	26.15	0.7725
AT3G29400		ATEXO70E1	exocyst subunit exo70 family p...		Potri.017G093966 [exp]	26.26	0.8247

Compare expression of checked genes

Potri.003G034200 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.