Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol	Pt-ATB.2
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G17720 840 / 0 ATBBETA, ATB BETA Protein phosphatase 2A, regulatory subunit PR55 (.1.2) AT1G51690 796 / 0 ATB ALPHA, ATBALPHA protein phosphatase 2A 55 kDa regulatory subunit B alpha isoform (.1.2.3)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G197300 [exp] 906 / 0 AT1G17720 861 / 0.0 Protein phosphatase 2A, regulatory subunit PR55 (.1.2) Potri.006G231000 [exp] 833 / 0 AT1G17720 831 / 0.0 Protein phosphatase 2A, regulatory subunit PR55 (.1.2) Potri.018G055001 [exp] 826 / 0 AT1G17720 823 / 0.0 Protein phosphatase 2A, regulatory subunit PR55 (.1.2) Potri.015G079300 [exp] 581 / 0 AT1G17720 547 / 0.0 Protein phosphatase 2A, regulatory subunit PR55 (.1.2)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10037653 [exp] 868 / 0 AT1G17720 879 / 0.0 Protein phosphatase 2A, regulatory subunit PR55 (.1.2) Lus10015635 [exp] 864 / 0 AT1G17720 878 / 0.0 Protein phosphatase 2A, regulatory subunit PR55 (.1.2) Lus10012083 [exp] 660 / 0 AT1G17720 669 / 0.0 Protein phosphatase 2A, regulatory subunit PR55 (.1.2) Lus10001239 [exp] 538 / 0 AT1G17720 576 / 0.0 Protein phosphatase 2A, regulatory subunit PR55 (.1.2) Lus10042101 [exp] 534 / 0 AT1G17720 570 / 0.0 Protein phosphatase 2A, regulatory subunit PR55 (.1.2) Lus10007401 [exp] 449 / 2e-154 AT1G51690 460 / 7e-159 protein phosphatase 2A 55 kDa regulatory subunit B alpha isoform (.1.2.3)
PFAM info
Representative CDS sequence Show only first row Show all	>Potri.003G034300.1 pacid=42785670 polypeptide=Potri.003G034300.1.p locus=Potri.003G034300 ID=Potri.003G034300.1.v4.1 annot-version=v4.1 ATGAACGGTGGAGATGAAGTTGGTGAAGCTCCGCCTGTTCCACCACAGCCTCTGGAGTGGAAATTCTCTCAGGTCTTCGGTGAACGAACCGCCGGTGAAG AAGTGCAAGAAGTTGATATTATTTCAGCAATTGAATTTGATAGAAGTGGTGATCATCTTGCTACCGGTGACCGTGGAGGCCGTGTGGTTCTCTTTGAGAG AACTGACACTAAGGATCATGGTGGATCCAGAAGGGATCTGGAGAGGATGGGTTACCCAATTAGTAGGCATCCTGAGTTTCGATATAAAACAGAATTTCAG AGCCATGAACCTGAGTTTGACTATCTCAAGAGTTTGGAAATAGAGGAGAAAATTAACAAAATCAGATGGTGCCAAACAACCAATGGTGCTCTTTTTCTCC TATCTACTAATGATAAAACCATCAAGTATTGGAAGGTCCAAGAGAAGAAGGTGAAGAAAATTTCTGAAATGAATGTGGACCCTTCTAAAGCTATAGGAAA TGGTAGCATTGCCAGTTCAAGCAATTCAAGTATTGGTAAACAATATCTTGCAAATGGAGGAGGCAAGTACGATTTACCAAGCAATGACTTCAGCATTCCT CCTGGGGGCTTTCCATCATTGCGTTTACCAGTGGTAGTGACGTCCGATGAGACAAGCTTGATGGCTAGTTGTCGAAGGGTATATGCTCATGCTCATGATT ATCATATTAATTCAATTTCAAACAACAGTGATGGTGAAACTTTTATATCCGCCGATGACCTACGAATAAATCTTTGGAATTTGGAAATTAGCAATCAAAG TTTCAATATTGTTGATGTCAAACCTGCAAATATGGAGGATCTTACTGAGGTTATAACATCAGCAGAATTCCACCCCGGTCATTGCAATACGTTAGCATAC AGCAGTTCAAAAGGCTCAATTCGACTCATTGATTTGCGACAATCAGCTTTGTGTGACTCTCATGCCAAATTGTTTGAGGAAACAGAGGCACCAGGCTCGA GATCATTTTTTACAGAAATAATTGCCTCAATCTCTGATATTAAATTTGCAAGGGATGGAAGACATATACTCAGTCGTGATTACATGACTCTTAAGTTGTG GGATATCAATATGGATTCTGGTCCAGTTGCAACCTTCCAAGTTCATGAACATTTAAGACCAAAGTTGTGTGATTTATATGAAAATGATTCAATCTTTGAT AAATTCGAGTGTTGTTTGAGTGGTGATGGATTGCGAGTTGCGACAGGCTCCTACAGCAATCTGTTTCGGGTATTTGGTTGTAACCTAGAAAGTACTGAGG CAACAACTTTGGAAGCCAGCAAAAATCCAATGAGGAGACAAGTCCAGACCCCTTCAAGGCCTTCAAGATCCCTAAGCAGCATAACACGTGTTGTAAGACG GGCAGGAGCAGAAGGCCCAGGAGTTGATCCAAATGGAAATTCTTTTGATTTCTCCACAAAGTTGTTGCACTTAGCATGGCATCCTACTGAAAATTCCATT GCCTGTGCTGCCGCAAACAGCTTGTACATGTACTATGCATAA
AA sequence Show only first row Show all	>Potri.003G034300.1 pacid=42785670 polypeptide=Potri.003G034300.1.p locus=Potri.003G034300 ID=Potri.003G034300.1.v4.1 annot-version=v4.1 MNGGDEVGEAPPVPPQPLEWKFSQVFGERTAGEEVQEVDIISAIEFDRSGDHLATGDRGGRVVLFERTDTKDHGGSRRDLERMGYPISRHPEFRYKTEFQ SHEPEFDYLKSLEIEEKINKIRWCQTTNGALFLLSTNDKTIKYWKVQEKKVKKISEMNVDPSKAIGNGSIASSSNSSIGKQYLANGGGKYDLPSNDFSIP PGGFPSLRLPVVVTSDETSLMASCRRVYAHAHDYHINSISNNSDGETFISADDLRINLWNLEISNQSFNIVDVKPANMEDLTEVITSAEFHPGHCNTLAY SSSKGSIRLIDLRQSALCDSHAKLFEETEAPGSRSFFTEIIASISDIKFARDGRHILSRDYMTLKLWDINMDSGPVATFQVHEHLRPKLCDLYENDSIFD KFECCLSGDGLRVATGSYSNLFRVFGCNLESTEATTLEASKNPMRRQVQTPSRPSRSLSSITRVVRRAGAEGPGVDPNGNSFDFSTKLLHLAWHPTENSI ACAAANSLYMYYA

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT1G17720		ATBBETA, ATB BE...	Protein phosphatase 2A, regula...		Potri.003G034300 [exp]	0	1	Pt-ATB.2
AT3G58650			unknown protein		Potri.010G140900 [exp]	3.46	0.8033
AT1G02816			Protein of unknown function, D...		Potri.005G024000 [exp]	20.29	0.7555
AT3G52770		ZPR3	LITTLE ZIPPER 3, protein bindi...		Potri.006G083201 [exp]	22.22	0.7156
AT2G01930	BBR_BPC	BPC1, BBR/BPC1,...	basic pentacysteine1 (.1.2)		Potri.008G140200 [exp]	22.24	0.7344
AT1G06920	OFP	ATOFP4, OFP4	ARABIDOPSIS THALIANA OVATE FAM...		Potri.019G128500 [exp]	23.49	0.7479
AT1G72770		HAB1	HYPERSENSITIVE TO ABA1, homolo...		Potri.003G044200 [exp]	52.15	0.6421
AT4G38240		GNTI, CGL1	N-ACETYLGLUCOSAMINYLTRANSFERAS...		Potri.004G206900 [exp]	56.12	0.7138
AT5G47520		AtRABA5a	RAB GTPase homolog A5A (.1)		Potri.006G015400 [exp]	57.57	0.6698	Pt-RAB11.16
AT1G51980			Insulinase (Peptidase family M...		Potri.008G193200 [exp]	65.24	0.6796
AT5G55760		SRT1	sirtuin 1 (.1)		Potri.001G368100 [exp]	74.45	0.6499

Compare expression of checked genes

Potri.003G034300 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.