Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G17710 399 / 1e-141 AtPEPC1 Arabidopsis thaliana phosphoethanolamine/phosphocholine phosphatase 1, Pyridoxal phosphate phosphatase-related protein (.1.2) AT1G73010 388 / 6e-137 AtPPsPase1, ATPS2 pyrophosphate-specific phosphatase1, phosphate starvation-induced gene 2 (.1) AT4G29530 285 / 5e-97 Pyridoxal phosphate phosphatase-related protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.008G196800 [exp] 502 / 0 AT1G73010 397 / 2e-140 pyrophosphate-specific phosphatase1, phosphate starvation-induced gene 2 (.1) Potri.018G054800 [exp] 323 / 2e-111 AT1G17710 311 / 7e-107 Arabidopsis thaliana phosphoethanolamine/phosphocholine phosphatase 1, Pyridoxal phosphate phosphatase-related protein (.1.2)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10008479 [exp] 395 / 8e-140 AT1G17710 378 / 3e-133 Arabidopsis thaliana phosphoethanolamine/phosphocholine phosphatase 1, Pyridoxal phosphate phosphatase-related protein (.1.2) Lus10001479 [exp] 394 / 2e-139 AT1G17710 381 / 1e-134 Arabidopsis thaliana phosphoethanolamine/phosphocholine phosphatase 1, Pyridoxal phosphate phosphatase-related protein (.1.2) Lus10015632 [exp] 390 / 8e-138 AT1G17710 372 / 1e-130 Arabidopsis thaliana phosphoethanolamine/phosphocholine phosphatase 1, Pyridoxal phosphate phosphatase-related protein (.1.2) Lus10037650 [exp] 384 / 4e-135 AT1G17710 359 / 1e-125 Arabidopsis thaliana phosphoethanolamine/phosphocholine phosphatase 1, Pyridoxal phosphate phosphatase-related protein (.1.2) Lus10015634 [exp] 321 / 5e-111 AT1G17710 301 / 2e-103 Arabidopsis thaliana phosphoethanolamine/phosphocholine phosphatase 1, Pyridoxal phosphate phosphatase-related protein (.1.2) Lus10008573 [exp] 279 / 8e-95 AT4G29530 285 / 5e-98 Pyridoxal phosphate phosphatase-related protein (.1) Lus10037652 [exp] 261 / 6e-88 AT1G17710 255 / 2e-85 Arabidopsis thaliana phosphoethanolamine/phosphocholine phosphatase 1, Pyridoxal phosphate phosphatase-related protein (.1.2) Lus10032691 [exp] 57 / 4e-09 AT5G53770 479 / 3e-164 Nucleotidyltransferase family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0137 [poplar] [flax] HAD PF06888 [poplar] [flax] Put_Phosphatase Putative Phosphatase
Representative CDS sequence Show only first row Show all	>Potri.003G034600.1 pacid=42785538 polypeptide=Potri.003G034600.1.p locus=Potri.003G034600 ID=Potri.003G034600.1.v4.1 annot-version=v4.1 ATGGCCGCCGTCGCCGCTGCAGCTGGTGGAATTGTGGTGGTTTTTGATTTTGACAAAACCATCATTGACGTGGATAGTGATAACTGGGTTATTGATGAGT TGGGTTTTACCGATTTGTTCAATCAACTCCTCCACACCATGCCATGGAATTCTCTCATGGACAGGATGATGAAGGAAATTCATTCACATGGAAAAACCAT TGAAGACATTGCAGAGGTTCTGAGACGTATTCCTATTCATCCCCAGGTCATCTCTGCTATCAAAGCAGCCCATGCTTTAGGGTGTGAGTTGAGGATTGTA AGTGATGCAAACATGTTCTTCATCGAGACAATTCTGAATCATCTTGGGTTGAAGGATTACTTCTCTGAAATCAACACGAACCCAGGTTTTGTTGATGAGC AAGAGAGGCTAAGGATATCTCCTTACCATGATTTTACTCAATCTTCTCATTGCTGCAGCCTTTGCCCTCCTAACATGTGCAAGGGTCTCATCATTGAAAG AATCCAAGCTTCCATATCCAAGGACGGAAGCAAGAAAATCATCTATCTTGGAGATGGTGCTGGCGATTATTGCCCGAGCTTGAAGCTTACTGAGGCAGAT TATGTGATGCCAAGGAAGAATTTCCCAGTGTGGGATTTAATCAGCGAGAATCCATTGCTTGTGAAGGCAGAAATTCATGAATGGATCAACGGGGCAGAGC TAGAACGGGTGCTGCTCCAAATTATTGAAAGAATTTCCACGGACGAGATCAGCAGCAATTCTGCCCAGTTGCTCTCAGCTGATTGCAAGTTACAGACCAT ATCAATTGCTGCTCATGAAGGCTTGCCTCAACCCCTCTCAGTTACCCAGTAG
AA sequence Show only first row Show all	>Potri.003G034600.1 pacid=42785538 polypeptide=Potri.003G034600.1.p locus=Potri.003G034600 ID=Potri.003G034600.1.v4.1 annot-version=v4.1 MAAVAAAAGGIVVVFDFDKTIIDVDSDNWVIDELGFTDLFNQLLHTMPWNSLMDRMMKEIHSHGKTIEDIAEVLRRIPIHPQVISAIKAAHALGCELRIV SDANMFFIETILNHLGLKDYFSEINTNPGFVDEQERLRISPYHDFTQSSHCCSLCPPNMCKGLIIERIQASISKDGSKKIIYLGDGAGDYCPSLKLTEAD YVMPRKNFPVWDLISENPLLVKAEIHEWINGAELERVLLQIIERISTDEISSNSAQLLSADCKLQTISIAAHEGLPQPLSVTQ

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT1G17710		AtPEPC1	Arabidopsis thaliana phosphoet...		Potri.003G034600 [exp]	0	1
AT2G32700		MUM1, LUH	MUCILAGE-MODIFIED 1, LEUNIG_ho...		Potri.004G045601 [exp]	55.96	0.6770
AT5G17230		PSY	PHYTOENE SYNTHASE (.1.2.3)		Potri.004G081433 [exp]	60.31	0.6603
AT5G38260			Protein kinase superfamily pro...		Potri.004G076500 [exp]	100.84	0.6588
AT4G29680			Alkaline-phosphatase-like fami...		Potri.018G066600 [exp]	130.49	0.6725
AT3G28760			unknown protein		Potri.017G080300 [exp]	227.15	0.6488

Compare expression of checked genes

Potri.003G034600 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.