Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G19480 280 / 6e-90 NFA2, NFA02, NAP1;2 NUCLEOSOME/CHROMATIN ASSEMBLY FACTOR GROUP A 2, NUCLEOSOME/CHROMATIN ASSEMBLY FACTOR GROUP A 02, nucleosome assembly protein 1;2 (.1.2.3) AT5G56950 268 / 1e-85 NFA3, NFA03, NAP1;3 NUCLEOSOME/CHROMATIN ASSEMBLY FACTOR GROUP A3, NUCLEOSOME/CHROMATIN ASSEMBLY FACTOR GROUP A 03, nucleosome assembly protein 1;3 (.1) AT4G26110 267 / 3e-85 NAP1;1, ATNAP1;1 ARABIDOPSIS THALIANA NUCLEOSOME ASSEMLY PROTEIN 1;1, nucleosome assembly protein1;1 (.1.2) AT3G13782 212 / 2e-64 NFA4, NFA04, NAP1;4 NUCLEOSOME/CHROMATIN ASSEMBLY FACTOR GROUP A 4, NUCLEOSOME/CHROMATIN ASSEMBLY FACTOR GROUP A 04, nucleosome assembly protein1;4 (.1) AT1G18800 72 / 7e-14 NRP2 NAP1-related protein 2 (.1) AT1G74560 59 / 1e-09 NRP1 NAP1-related protein 1 (.1.2.3)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.003G036200 [exp] 545 / 0 AT2G19480 285 / 3e-92 NUCLEOSOME/CHROMATIN ASSEMBLY FACTOR GROUP A 2, NUCLEOSOME/CHROMATIN ASSEMBLY FACTOR GROUP A 02, nucleosome assembly protein 1;2 (.1.2.3) Potri.003G040700 [exp] 493 / 1e-171 AT2G19480 287 / 7e-93 NUCLEOSOME/CHROMATIN ASSEMBLY FACTOR GROUP A 2, NUCLEOSOME/CHROMATIN ASSEMBLY FACTOR GROUP A 02, nucleosome assembly protein 1;2 (.1.2.3) Potri.003G040250 [exp] 401 / 1e-131 AT2G19480 280 / 9e-87 NUCLEOSOME/CHROMATIN ASSEMBLY FACTOR GROUP A 2, NUCLEOSOME/CHROMATIN ASSEMBLY FACTOR GROUP A 02, nucleosome assembly protein 1;2 (.1.2.3) Potri.003G021400 [exp] 358 / 1e-120 AT2G19480 286 / 2e-94 NUCLEOSOME/CHROMATIN ASSEMBLY FACTOR GROUP A 2, NUCLEOSOME/CHROMATIN ASSEMBLY FACTOR GROUP A 02, nucleosome assembly protein 1;2 (.1.2.3) Potri.006G148600 [exp] 280 / 5e-90 AT2G19480 447 / 1e-157 NUCLEOSOME/CHROMATIN ASSEMBLY FACTOR GROUP A 2, NUCLEOSOME/CHROMATIN ASSEMBLY FACTOR GROUP A 02, nucleosome assembly protein 1;2 (.1.2.3) Potri.018G067800 [exp] 280 / 6e-90 AT2G19480 462 / 4e-163 NUCLEOSOME/CHROMATIN ASSEMBLY FACTOR GROUP A 2, NUCLEOSOME/CHROMATIN ASSEMBLY FACTOR GROUP A 02, nucleosome assembly protein 1;2 (.1.2.3) Potri.012G069100 [exp] 63 / 7e-11 AT1G18800 325 / 7e-113 NAP1-related protein 2 (.1) Potri.017G080700 [exp] 61 / 3e-10 AT1G18800 292 / 4e-100 NAP1-related protein 2 (.1) Potri.015G062700 [exp] 59 / 1e-09 AT1G18800 324 / 2e-112 NAP1-related protein 2 (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10011957 [exp] 289 / 6e-94 AT2G19480 449 / 2e-158 NUCLEOSOME/CHROMATIN ASSEMBLY FACTOR GROUP A 2, NUCLEOSOME/CHROMATIN ASSEMBLY FACTOR GROUP A 02, nucleosome assembly protein 1;2 (.1.2.3) Lus10011956 [exp] 287 / 4e-93 AT2G19480 422 / 8e-148 NUCLEOSOME/CHROMATIN ASSEMBLY FACTOR GROUP A 2, NUCLEOSOME/CHROMATIN ASSEMBLY FACTOR GROUP A 02, nucleosome assembly protein 1;2 (.1.2.3) Lus10037630 [exp] 286 / 1e-92 AT2G19480 386 / 1e-133 NUCLEOSOME/CHROMATIN ASSEMBLY FACTOR GROUP A 2, NUCLEOSOME/CHROMATIN ASSEMBLY FACTOR GROUP A 02, nucleosome assembly protein 1;2 (.1.2.3) Lus10015612 [exp] 284 / 4e-88 AT1G17650 495 / 4e-172 glyoxylate reductase 2 (.1) Lus10027615 [exp] 245 / 2e-77 AT2G19480 385 / 3e-134 NUCLEOSOME/CHROMATIN ASSEMBLY FACTOR GROUP A 2, NUCLEOSOME/CHROMATIN ASSEMBLY FACTOR GROUP A 02, nucleosome assembly protein 1;2 (.1.2.3) Lus10011959 [exp] 218 / 3e-65 AT2G19480 319 / 5e-106 NUCLEOSOME/CHROMATIN ASSEMBLY FACTOR GROUP A 2, NUCLEOSOME/CHROMATIN ASSEMBLY FACTOR GROUP A 02, nucleosome assembly protein 1;2 (.1.2.3) Lus10001235 [exp] 190 / 3e-56 AT4G26110 250 / 2e-81 ARABIDOPSIS THALIANA NUCLEOSOME ASSEMLY PROTEIN 1;1, nucleosome assembly protein1;1 (.1.2) Lus10026197 [exp] 188 / 2e-55 AT4G26110 229 / 7e-73 ARABIDOPSIS THALIANA NUCLEOSOME ASSEMLY PROTEIN 1;1, nucleosome assembly protein1;1 (.1.2) Lus10042106 [exp] 181 / 7e-53 AT4G26110 242 / 1e-77 ARABIDOPSIS THALIANA NUCLEOSOME ASSEMLY PROTEIN 1;1, nucleosome assembly protein1;1 (.1.2) Lus10001231 [exp] 180 / 3e-52 AT5G56950 229 / 6e-73 NUCLEOSOME/CHROMATIN ASSEMBLY FACTOR GROUP A3, NUCLEOSOME/CHROMATIN ASSEMBLY FACTOR GROUP A 03, nucleosome assembly protein 1;3 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF00956 [poplar] [flax] NAP Nucleosome assembly protein (NAP)
Representative CDS sequence Show only first row Show all	>Potri.003G036500.1 pacid=42784527 polypeptide=Potri.003G036500.1.p locus=Potri.003G036500 ID=Potri.003G036500.1.v4.1 annot-version=v4.1 ATGAGTAACTATAACATGAAGGTGTCATCGTCTCCCAAGGTCAGCAAACACGTGGAGTGTCTCAGACATCTTCAGAGCCAACATGATGAGCTGGAAGCAC AGTTCCTTGAGGAGAGAAAGGCATTAGAAGCTAAATACAACAAGCTTTATCAACCACTATACACTAAGAGATATGAGATTGTGAATGGTCTAAAAGAAGT TGACGGGGTTATGTCTGCTGAATTAGATAGCATAAAAGAGGATCAAGCTATAGAAGAGAAAGGAGTGCCTGAATTCTGGCTCACTGCAATGAAAACTCAT GAAGTACTAGCAGAGGAGATTAAGGGACAAGATGAAGGAGCCCTAAAGTTCATAAAAGATATCAAGTGGTCGAGACTTCAAAATCCTGAGGGTTTCGAGC TGGAGTTTTACTTCAACCCTTGTCCTTACTTCAAAAATTCTGTCCTGACAAAGACTTGTCACGTAATTGATGAATCTGATCCTATTTTGAGTCAAGCAAT TGGTTCGGAAATTGAATGGTATCCTGAGAAATGCTTGACGACGAAGGTTGTGAAGAGGAAACAAAGAACGGTGTCAAAGAAGACCAAAACCACCATGACA ATTAAGAACTGTGAAAGTTTCTTCACATTCTTTAATACTTCTCAGATCCCTGAGAATGAGGATGAGCTAGATGATGATGATTATGATGAACTTCAGGACC GGCTAAAACAAGGCTACAATTTAGGTAATATTATTCGGGACAAAATCATTCCACATGCTGTGTCATGGTTTACTGGAGAGGCTATCGAGGAAGATGAGTT AGATGGTATAGATTATGATGGCAATGATGATGATGATGATGATGATGAGGATTATGAGGATGATGATGGGGATGAGGAGGACAATGAAAGGGACAAGGAG GCTGAGCAAGAAGAGAAAAGAAAACAAGGTGTGAAGAAGGACATCAAAAAGGACTATGATGAGGATGAGGATGAGGAAAATGAAAGAAAATGGGGCTTGA AGAAGGATGATGATGATGATGATGATGAGGCTGGAGATGAGGAGAATGATGATGGGGATGAGGAGGACAATGAAAGGGACAAGGAGGCTGAGCAAGAAGA GAAAAGAAAACAAGGTGTGAAGAAGGACATCAAAAAGGACTATGATGAGGATGAGGATGAAGAAAAGGAAAGAAATTGGGACTTGAAGAAGGATGATGAT GATGAGGCTGAAGATGACGAGTATGATGACGGGGATGAGGAGGACAATGCAAGCGACAAGGAGGCTGAGCAAGAAGAGAAAAGAAAACAAGGTGTGAAGA AGGACATCAAAGAGGACAATGATGAGGACGGGGATGAGGAAAAGGAAAGAAAATGGGGTCTAAAGAAGGATGTTGAAGACGAGGATGAGGAGGAAGAGGA AGAAAAACAGGTCTGGAAGAAGTCATCCGATGGACACAAGAAGATTGGAGGGGCACAAATTCAGAAAGAGCACCCTCCTGAGTGCAAGCAACAGTAG
AA sequence Show only first row Show all	>Potri.003G036500.1 pacid=42784527 polypeptide=Potri.003G036500.1.p locus=Potri.003G036500 ID=Potri.003G036500.1.v4.1 annot-version=v4.1 MSNYNMKVSSSPKVSKHVECLRHLQSQHDELEAQFLEERKALEAKYNKLYQPLYTKRYEIVNGLKEVDGVMSAELDSIKEDQAIEEKGVPEFWLTAMKTH EVLAEEIKGQDEGALKFIKDIKWSRLQNPEGFELEFYFNPCPYFKNSVLTKTCHVIDESDPILSQAIGSEIEWYPEKCLTTKVVKRKQRTVSKKTKTTMT IKNCESFFTFFNTSQIPENEDELDDDDYDELQDRLKQGYNLGNIIRDKIIPHAVSWFTGEAIEEDELDGIDYDGNDDDDDDDEDYEDDDGDEEDNERDKE AEQEEKRKQGVKKDIKKDYDEDEDEENERKWGLKKDDDDDDDEAGDEENDDGDEEDNERDKEAEQEEKRKQGVKKDIKKDYDEDEDEEKERNWDLKKDDD DEAEDDEYDDGDEEDNASDKEAEQEEKRKQGVKKDIKEDNDEDGDEEKERKWGLKKDVEDEDEEEEEEKQVWKKSSDGHKKIGGAQIQKEHPPECKQQ

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT2G19480		NFA2, NFA02, NA...	NUCLEOSOME/CHROMATIN ASSEMBLY ...		Potri.003G036500 [exp]	0	1
AT2G19480		NFA2, NFA02, NA...	NUCLEOSOME/CHROMATIN ASSEMBLY ...		Potri.003G040700 [exp]	2.00	0.9513
AT1G75260			oxidoreductases, acting on NAD...		Potri.002G034700 [exp]	2.00	0.9520
AT5G04890		RTM2	RESTRICTED TEV MOVEMENT 2, HSP...		Potri.008G013800 [exp]	7.00	0.9247
AT1G30080			Glycosyl hydrolase superfamily...		Potri.004G132700 [exp]	7.74	0.9204
AT3G15730		PLDALPHA1	phospholipase D alpha 1 (.1)		Potri.006G253900 [exp]	8.36	0.9354
AT5G04890		RTM2	RESTRICTED TEV MOVEMENT 2, HSP...		Potri.010G245500 [exp]	9.16	0.9287
AT1G76040		CPK29	calcium-dependent protein kina...		Potri.002G017000 [exp]	9.38	0.9360
AT1G27680		APL2	ADPGLC-PPase large subunit (.1...		Potri.014G110000 [exp]	9.48	0.9214
AT2G02240		MEE66	maternal effect embryo arrest ...		Potri.018G015800 [exp]	10.19	0.9016
AT1G60360			RING/U-box superfamily protein...		Potri.002G085800 [exp]	10.72	0.8872

Compare expression of checked genes

Potri.003G036500 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.