Plant FIBer expression Database

Potri.003G036800 [POPLAR]


External link
JGI Phytozome v13PopgenieAspWood                  
Symbol
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT3G13800 515 / 0 Metallo-hydrolase/oxidoreductase superfamily protein (.1.2)
AT1G30300 201 / 1e-61 Metallo-hydrolase/oxidoreductase superfamily protein (.1)
AT4G03610 166 / 2e-48 Metallo-hydrolase/oxidoreductase superfamily protein (.1.2)
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Potri.011G081600
[exp]
211 / 2e-65 AT1G30300 506 / 0.0 Metallo-hydrolase/oxidoreductase superfamily protein (.1)
Flax homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10004844
[exp]
565 / 0 AT3G13800 530 / 0.0 Metallo-hydrolase/oxidoreductase superfamily protein (.1.2)
Lus10023286
[exp]
199 / 8e-61 AT1G30300 527 / 0.0 Metallo-hydrolase/oxidoreductase superfamily protein (.1)
Lus10038519
[exp]
130 / 4e-35 AT1G30300 323 / 3e-111 Metallo-hydrolase/oxidoreductase superfamily protein (.1)
PFAM info
Clan ID Clan name Pfam ID Pfam name Pfam description
CL0381 Metallo-HOrase PF12706 Lactamase_B_2 Beta-lactamase superfamily domain
Representative CDS sequence
>Potri.003G036800.1 pacid=42786052 polypeptide=Potri.003G036800.1.p locus=Potri.003G036800 ID=Potri.003G036800.1.v4.1 annot-version=v4.1
ATGGTTCAATATCTGGGCACAGTACGCGTTACTCCTTCCCTGCCCAGTTTCAGACGCCAAATCAATCTCATCAATCTCAACTCCTGTCCTCCATTTTCAC
TTTCAAGAAATGGGTTCTTCTCCTCTTCACTTTCAAGAAATGGGTTCTTCTTATCTTCACTTCCAGGAAATGGGGTTCCCTCATCTTCACTTTCAGGAAA
TGGGCTCTCCTCATCTTCACTCTCAGGAAATGGGTTCTCCTCATTTTCACTTCCTAGAAACGGGTTCTCTCCCTTCAGAAGGATTCTTCAAGCTTGTCTT
CAATCAAATGCTAGTAGAAATGCTGATGCACAGTTACAGGCTGGCCAATCTGAAATTATTTTTATGGGGACGGGGACTAGTGAAGGGATTCCACGTCTCA
GCTGCCTTACCAATCCTTCAAATAAATGTCCGGTGTGCTCGAAAGCTGTGGAACCAGGTAACAAGAACAGGAGGCTTAACACAGGCCTCCTTATATGCTA
TCATGGACCCTCTGGAAGGCGCAACATTCTTATAGATGTCGGCAAGTTTTTCTACCATAGTGCTCTTCGATGGTTTCCTGCATTTGGGCTAAGAACAATT
GATGCGGTTATTATTACTCATTCTCATGCTGATGCAATTGGAGGTCTGGATGATCTCCGTGATTGGACAAACAATGTGCAGCCTTACATTCCAATTTATG
TTGCAGAGCGTGATTTTGAGGTGATGAAGAAGACTCATTATTATTTGGTGGATACAAGTGTGGTTACACCAGGTGCTGCTGTCTCAGAGCTGCAATTTAA
CCTAATACATGAAGAGCCCTTTGTTGTGAATGATTTGAAGTTTACCCCTTTACCAGTGTGGCATGGTCATGGTTATCGTTCTCTTGGTTTTCGTTTTGGT
AACATATGTTACATCAGTGATGTTAGTGAAATACCTGAAGAAACGTATCCACTCCTTAAGGACTGTGAACTTCTGATTATGGATGCTTTGCGGCCTGATC
GGTCTTCGTCGACACACTTTGGACTTCCAAGGGCCATAGAAGAAGTACGGAAAATTCAACCAAGGAGAACACTTTTCACTGGTATGATGCACCTGATGGA
TCATGATAATGTGAATGAATATCTTGCAAAATTGATGGAGACAGAAGGTCTCAATGTGGAGCTAAGCTATGATGGGTTGTGTGTGCCCGTAACACTCTAG
AA sequence
>Potri.003G036800.1 pacid=42786052 polypeptide=Potri.003G036800.1.p locus=Potri.003G036800 ID=Potri.003G036800.1.v4.1 annot-version=v4.1
MVQYLGTVRVTPSLPSFRRQINLINLNSCPPFSLSRNGFFSSSLSRNGFFLSSLPGNGVPSSSLSGNGLSSSSLSGNGFSSFSLPRNGFSPFRRILQACL
QSNASRNADAQLQAGQSEIIFMGTGTSEGIPRLSCLTNPSNKCPVCSKAVEPGNKNRRLNTGLLICYHGPSGRRNILIDVGKFFYHSALRWFPAFGLRTI
DAVIITHSHADAIGGLDDLRDWTNNVQPYIPIYVAERDFEVMKKTHYYLVDTSVVTPGAAVSELQFNLIHEEPFVVNDLKFTPLPVWHGHGYRSLGFRFG
NICYISDVSEIPEETYPLLKDCELLIMDALRPDRSSSTHFGLPRAIEEVRKIQPRRTLFTGMMHLMDHDNVNEYLAKLMETEGLNVELSYDGLCVPVTL

DESeq2's median of ratios [POPLAR]

Mapped by: Order by: Show schematic diagram

Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol NWA:WTNWB:WTNWA:OE-ARK2NWB:OE-ARK2NWA:miRNA-ARK2NWB:miRNA-ARK2NW 0hrWT H20WT-NWTUA1dEY NWTUA1dEY+TUB15 NWTUA1dY+TUB9 NWPde NWNWA:WT GANWBWT GATW:WTTW:WT GANWA:OE-ARK2 GANWB:OE-ARK2 GATW:OE-ARK2TW:OE-ARK2 GANWA:miRNA-ARK2 GANWB:miRNA-ARK2 GATW:miRNA-ARK2TW:miRNA-ARK2 GATW 2hrTW 8hrTW 24hrTW 48hrTW 96hrTW 336hrWT ACC35S::etr1-1 H2035S::etr1-1 ACCLMX5::etr1-1 H20LMX5::etr1-1 ACCWT-TWTUA1dEY TWTUA1dEY+TUB15 TWTUA1dY+TUB9 TWPde TWOW:WTOW:WT GAOW:OE-ARK2OW:OE-ARK2 GAOW:miRNA-ARK2OW:miRNA-ARK2 GAOW 2hrOW 8hrOW 24hrOW 48hrOW 96hrOW 336hrRoot CTRRoot LongColdRoot LongDrougtRoot LongHeatRoot LongSaltRoot ShortColdRoot ShortDrougtRoot ShortHeatRoot ShortSaltPtr rootLeaf CTRLeaf LongColdLeaf LongDrougtLeaf LongHeatLeaf LongSaltLeaf ShortColdLeaf ShortDrougtLeaf ShortHeatLeaf ShortSaltPtr leafStem CTRStem LongColdStem LongDrougtStem LongHeatStem LongSaltStem ShortColdStem ShortDrougtStem ShortHeatStem ShortSaltPtr shootPtr xylemPtr phloemPtr fiberPtr vesselPtr fiber vessel ray
AT3G13800 Metallo-hydrolase/oxidoreducta... Potri.003G036800
[exp]
0 1
AT3G20800 Cell differentiation, Rcd1-lik... Potri.001G359300
[exp]
6.63 0.7823
AT3G12290 Amino acid dehydrogenase famil... Potri.011G098600
[exp]
8.66 0.7945
AT1G01860 PFC1 PALEFACE 1, Ribosomal RNA aden... Potri.014G077100
[exp]
8.71 0.8502
AT1G22750 unknown protein Potri.005G198600
[exp]
10.67 0.7570
AT3G59780 Rhodanese/Cell cycle control p... Potri.019G098950
[exp]
17.40 0.8468
AT1G22940 THIE, TH-1, TH1 THIAMINEE, THIAMINE REQUIRING ... Potri.003G015700
[exp]
18.97 0.7867 Pt-TH1.1
AT5G22860 Serine carboxypeptidase S28 fa... Potri.001G213400
[exp]
27.12 0.7603
AT1G65420 NPQ7 NONPHOTOCHEMICAL QUENCHING 7, ... Potri.008G076900
[exp]
27.29 0.8242
AT5G37055 ATSWC6, SEF SERRATED LEAVES AND EARLY FLOW... Potri.013G152600
[exp]
28.58 0.7549
AT1G79810 PEX2, TED3, ATP... ARABIDOPSIS PEROXIN 2, Pex2/Pe... Potri.001G186000
[exp]
30.16 0.8213 Pt-TED3.2

Potri.003G036800 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.