Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G55110 371 / 8e-124 C2H2ZnF ARABIDOPSISTHALIANAINDETERMINATE(ID)-DOMAIN7, ATIDD7, ARABIDOPSISTHALIANAINDETERMINATE(ID)-DOMAIN7 indeterminate(ID)-domain 7 (.1) AT3G13810 366 / 5e-121 C2H2ZnF ATIDD11 indeterminate(ID)-domain 11 (.1), indeterminate(ID)-domain 11 (.2), indeterminate(ID)-domain 11 (.3) AT5G66730 345 / 4e-113 C2H2ZnF IDD1, ENY INDETERMINATE DOMAIN 1, ENHYDROUS, C2H2-like zinc finger protein (.1) AT1G03840 344 / 1e-112 C2H2ZnF MGP Magpie, C2H2 and C2HC zinc fingers superfamily protein (.1.2) AT5G44160 340 / 2e-111 C2H2ZnF AtIDD8, NUC nutcracker, INDETERMINATE DOMAIN 8, C2H2-like zinc finger protein (.1) AT3G50700 332 / 7e-109 C2H2ZnF ATIDD2 indeterminate(ID)-domain 2 (.1) AT1G14580 333 / 1e-108 C2H2ZnF C2H2-like zinc finger protein (.1.2) AT2G02080 331 / 2e-107 C2H2ZnF ATIDD4 indeterminate(ID)-domain 4 (.1), indeterminate(ID)-domain 4 (.2) AT4G02670 325 / 9e-107 C2H2ZnF ATIDD12 indeterminate(ID)-domain 12 (.1) AT3G45260 324 / 8e-106 C2H2ZnF C2H2-like zinc finger protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.006G227600 [exp] 466 / 7e-160 AT3G45260 308 / 9e-100 C2H2-like zinc finger protein (.1) Potri.018G052200 [exp] 448 / 4e-153 AT1G55110 339 / 1e-111 indeterminate(ID)-domain 7 (.1) Potri.002G048000 [exp] 352 / 3e-116 AT4G02670 362 / 6e-122 indeterminate(ID)-domain 12 (.1) Potri.013G019200 [exp] 346 / 2e-113 AT3G50700 327 / 4e-107 indeterminate(ID)-domain 2 (.1) Potri.007G028800 [exp] 345 / 1e-112 AT5G66730 416 / 1e-140 INDETERMINATE DOMAIN 1, ENHYDROUS, C2H2-like zinc finger protein (.1) Potri.005G215100 [exp] 342 / 4e-112 AT1G03840 328 / 1e-107 Magpie, C2H2 and C2HC zinc fingers superfamily protein (.1.2) Potri.002G208444 [exp] 344 / 6e-112 AT3G50700 311 / 2e-100 indeterminate(ID)-domain 2 (.1) Potri.017G017100 [exp] 340 / 2e-111 AT1G03840 459 / 1e-158 Magpie, C2H2 and C2HC zinc fingers superfamily protein (.1.2) Potri.007G135000 [exp] 338 / 7e-111 AT1G03840 435 / 3e-149 Magpie, C2H2 and C2HC zinc fingers superfamily protein (.1.2)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10008396 [exp] 352 / 7e-115 AT3G13810 339 / 1e-110 indeterminate(ID)-domain 11 (.1), indeterminate(ID)-domain 11 (.2), indeterminate(ID)-domain 11 (.3) Lus10010820 [exp] 332 / 3e-111 AT3G50700 349 / 2e-119 indeterminate(ID)-domain 2 (.1) Lus10004840 [exp] 340 / 1e-110 AT3G13810 337 / 1e-110 indeterminate(ID)-domain 11 (.1), indeterminate(ID)-domain 11 (.2), indeterminate(ID)-domain 11 (.3) Lus10007168 [exp] 337 / 2e-109 AT5G66730 386 / 2e-129 INDETERMINATE DOMAIN 1, ENHYDROUS, C2H2-like zinc finger protein (.1) Lus10041723 [exp] 333 / 2e-108 AT3G50700 489 / 1e-170 indeterminate(ID)-domain 2 (.1) Lus10026497 [exp] 322 / 3e-104 AT5G03150 384 / 2e-129 JACKDAW, C2H2-like zinc finger protein (.1) Lus10019927 [exp] 322 / 4e-104 AT5G03150 386 / 6e-130 JACKDAW, C2H2-like zinc finger protein (.1) Lus10041356 [exp] 334 / 8e-104 AT1G03840 332 / 2e-103 Magpie, C2H2 and C2HC zinc fingers superfamily protein (.1.2) Lus10029904 [exp] 315 / 8e-102 AT1G55110 337 / 6e-112 indeterminate(ID)-domain 7 (.1) Lus10004497 [exp] 314 / 2e-101 AT1G55110 341 / 5e-113 indeterminate(ID)-domain 7 (.1)
PFAM info
Representative CDS sequence Show only first row Show all	>Potri.003G036900.6 pacid=42785174 polypeptide=Potri.003G036900.6.p locus=Potri.003G036900 ID=Potri.003G036900.6.v4.1 annot-version=v4.1 ATGATGAAAAGTTTGATGTTTCATCAGCAACAGCAACAAATACTACAAGAGGAAAATATGTCTAATTTGACTTCTGCTTCTGGTGATCAAGCAAGTGTTT CTTCAGGCAACAGAAATGAAACTGGCACCAACTACGGAGTTCAGCAATACTTTGCTCCTCCAGCTCAAACCCAGCCTCCAGTCAAAAAGAAGAGAAACCT ACCAGGAAATCCAGACCCAGATGCAGAAGTGATAGCTTTGTCACCCACGACTTTGATGGCGACAAATAGATTTCTGTGTGAGATCTGCAACAAGGGGTTT CAGAGAGATCAGAATCTTCAGCTTCATAGAAGAGGGCACAACCTGCCATGGAAGCTGAAGCAAAGAACAAGCAAGGAGGTAAGGAAGAAGGTGTATGTGT GCCCGGAACCAAATTGTGTACACCATGATCCATCAAGGGCTCTTGGGGACCTGACAGGAATCAAGAAGCATTTTTGCAGAAAACATGGTGAGAAGAAGTG GAAATGTGTCAAGTGCTCAAAGAGGTATGCAGTTCAATCAGATTGGAAAGCTCACGCCAAGACCTGTGGCACTAGGGAGTACAGATGTGACTGTGGAACT CTTTTCTCAAGGAGGGACAGTTTCATTACTCACAGAGCTTTCTGTGAAGCTTTAGCGGAGGAGAGTGCAAGGGCTATAACAGGAGCACCAGGCCAATTTC TTTCCACACAACCTGGTTCTTCAACTCCCCGTATCAATCTCCAAGTGCCCCAATTCAGTGGTCAAGACCTTCATGCGTTTTCACTTAAAAAAGAGCAGCA AAGTAGTTTTCGTTCAAGGCCAGATTTCCCACCATGGCTAGCATGCCCACCAGGACTAGGGGGTCCTGGCCCACCACATCAACAAACACCTATTGATCTT CTGTCTTCCTCATCCTCGCCATCAATCCTCTCAACAAGGCTAGGTCAAGAGTTCACGCCAACCCATCAAGATATGAGTCCAAACCCTAACCCTAGTCTTG GCCCCACTCTACCACAGTTCCCTTCAGGACCATCCCCACACATGTCAGCCACTGCATTGCTGCAGAAAGCAGCCCAGATGGGTGCAACCGTGAGCAGCAA AACTACTGGCTTGATGAGACCCCACCACCACCAACAGCAACAAGAACAAGCTCACGTGTCTGCTAATGCTGATAACGTTTCAAATACAAACACAGCTGTT TTTGGTCTGAATTTGTCCTCACGTGAAGAGCTGGCAAGTGGTGGCTTGTTTTTCAGTGGCTTGGCTCCTTTTGGGAATAAAGCTGGACCTACAGTTCCCT CTGGTGCTAGCAGTACTGGTGCACTGCCCTCAGGTGCTCTTATTGAAGACATGATGAGTTCTTTATCTTCTGCTTCTGGGTTTGAAGGGACTTCCCTTGA AGATGCATTAGCTAGTGGAGTTCTGAATTCAAAGAAGGATGTTAATTTCAGCTACTCGCTATCTAAAACAACAAGAAATGACAATGGGGGTGGCAGTAGT GGTGGAAATGAAGGCATGACTAGAGATTTCTTGGGCCTCAGACCCCTATCTCACAGTGATATACTCAGTATGGCAGGTCTTAGTAATTGTGTTAATACCT CACATGAGCAACAGATTCACAAACCATGGAAAGGTTAG
AA sequence Show only first row Show all	>Potri.003G036900.6 pacid=42785174 polypeptide=Potri.003G036900.6.p locus=Potri.003G036900 ID=Potri.003G036900.6.v4.1 annot-version=v4.1 MMKSLMFHQQQQQILQEENMSNLTSASGDQASVSSGNRNETGTNYGVQQYFAPPAQTQPPVKKKRNLPGNPDPDAEVIALSPTTLMATNRFLCEICNKGF QRDQNLQLHRRGHNLPWKLKQRTSKEVRKKVYVCPEPNCVHHDPSRALGDLTGIKKHFCRKHGEKKWKCVKCSKRYAVQSDWKAHAKTCGTREYRCDCGT LFSRRDSFITHRAFCEALAEESARAITGAPGQFLSTQPGSSTPRINLQVPQFSGQDLHAFSLKKEQQSSFRSRPDFPPWLACPPGLGGPGPPHQQTPIDL LSSSSSPSILSTRLGQEFTPTHQDMSPNPNPSLGPTLPQFPSGPSPHMSATALLQKAAQMGATVSSKTTGLMRPHHHQQQQEQAHVSANADNVSNTNTAV FGLNLSSREELASGGLFFSGLAPFGNKAGPTVPSGASSTGALPSGALIEDMMSSLSSASGFEGTSLEDALASGVLNSKKDVNFSYSLSKTTRNDNGGGSS GGNEGMTRDFLGLRPLSHSDILSMAGLSNCVNTSHEQQIHKPWKG

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT1G55110	C2H2ZnF	ARABIDOPSISTHAL...	indeterminate(ID)-domain 7 (.1...		Potri.003G036900 [exp]	0	1
AT5G42750		BKI1	BRI1 kinase inhibitor 1 (.1)		Potri.014G031100 [exp]	2.00	0.9743
AT1G12770		ISE1, EMB1586	INCREASED SIZE EXCLUSION LIMIT...		Potri.003G123600 [exp]	6.00	0.9634
AT5G55830			Concanavalin A-like lectin pro...		Potri.015G004500 [exp]	20.49	0.9351
AT1G11750		NCLPP6, NCLPP1,...	NUCLEAR-ENCODED CLPP 1, CLP pr...		Potri.004G152900 [exp]	22.04	0.9536	Pt-CLPP6.2
AT5G49920			Octicosapeptide/Phox/Bem1p fam...		Potri.003G006200 [exp]	22.18	0.9172
AT4G00050	bHLH	bHLH016, UNE10	unfertilized embryo sac 10, ba...		Potri.014G066500 [exp]	22.29	0.9515
AT1G65260		VIPP1, PTAC4	VESICLE-INDUCING PROTEIN IN PL...		Potri.006G123600 [exp]	23.02	0.9567
AT1G52855			unknown protein		Potri.001G405400 [exp]	23.04	0.9208
AT2G29760		OTP81	ORGANELLE TRANSCRIPT PROCESSIN...		Potri.005G012600 [exp]	23.32	0.9474
AT3G10970			Haloacid dehalogenase-like hyd...		Potri.019G049000 [exp]	23.32	0.9375

Compare expression of checked genes

Potri.003G036900 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.