Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G72990 922 / 0 BGAL17 beta-galactosidase 17 (.1.2) AT4G36360 165 / 2e-42 BGAL3 beta-galactosidase 3 (.1.2) AT3G13750 161 / 4e-41 BGAL1 beta-galactosidase 1, beta galactosidase 1 (.1) AT4G26140 157 / 2e-40 BGAL12 beta-galactosidase 12 (.1.2) AT1G45130 157 / 4e-40 BGAL5 beta-galactosidase 5 (.1) AT1G31740 154 / 7e-39 BGAL15 beta-galactosidase 15 (.1) AT5G20710 153 / 1e-38 BGAL7 beta-galactosidase 7 (.1) AT3G52840 151 / 6e-38 BGAL2 beta-galactosidase 2 (.1) AT2G28470 151 / 8e-38 BGAL8 beta-galactosidase 8 (.1.2) AT2G32810 150 / 1e-37 BGAL9 beta-galactosidase 9, beta galactosidase 9 (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.004G159800 [exp] 167 / 3e-43 AT4G36360 1137 / 0.0 beta-galactosidase 3 (.1.2) Potri.003G038500 [exp] 161 / 3e-41 AT3G13750 1484 / 0.0 beta-galactosidase 1, beta galactosidase 1 (.1) Potri.001G200400 [exp] 160 / 9e-41 AT3G13750 1471 / 0.0 beta-galactosidase 1, beta galactosidase 1 (.1) Potri.005G232600 [exp] 160 / 1e-40 AT4G36360 1332 / 0.0 beta-galactosidase 3 (.1.2) Potri.001G025701 [exp] 159 / 2e-40 AT5G20710 1123 / 0.0 beta-galactosidase 7 (.1) Potri.006G144500 [exp] 157 / 8e-40 AT3G13750 1260 / 0.0 beta-galactosidase 1, beta galactosidase 1 (.1) Potri.001G025800 [exp] 156 / 1e-39 AT5G20710 1097 / 0.0 beta-galactosidase 7 (.1) Potri.007G018100 [exp] 155 / 4e-39 AT4G36360 1499 / 0.0 beta-galactosidase 3 (.1.2) Potri.006G139100 [exp] 152 / 4e-38 AT5G20710 907 / 0.0 beta-galactosidase 7 (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10037634 [exp] 978 / 0 AT1G72990 909 / 0.0 beta-galactosidase 17 (.1.2) Lus10015616 [exp] 947 / 0 AT1G72990 870 / 0.0 beta-galactosidase 17 (.1.2) Lus10024292 [exp] 170 / 2e-44 AT1G45130 1128 / 0.0 beta-galactosidase 5 (.1) Lus10015625 [exp] 166 / 2e-42 AT3G13750 1417 / 0.0 beta-galactosidase 1, beta galactosidase 1 (.1) Lus10025980 [exp] 165 / 2e-42 AT4G36360 1422 / 0.0 beta-galactosidase 3 (.1.2) Lus10037644 [exp] 164 / 4e-42 AT3G13750 1432 / 0.0 beta-galactosidase 1, beta galactosidase 1 (.1) Lus10000803 [exp] 163 / 4e-42 AT1G45130 1050 / 0.0 beta-galactosidase 5 (.1) Lus10000701 [exp] 159 / 2e-40 AT3G13750 1481 / 0.0 beta-galactosidase 1, beta galactosidase 1 (.1) Lus10006009 [exp] 155 / 3e-39 AT4G26140 1080 / 0.0 beta-galactosidase 12 (.1.2) Lus10028848 [exp] 154 / 9e-39 AT4G26140 1080 / 0.0 beta-galactosidase 12 (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0058 [poplar] [flax] Glyco_hydro_tim PF01301 [poplar] [flax] Glyco_hydro_35 Glycosyl hydrolases family 35
Representative CDS sequence Show only first row Show all	>Potri.003G037000.2 pacid=42786287 polypeptide=Potri.003G037000.2.p locus=Potri.003G037000 ID=Potri.003G037000.2.v4.1 annot-version=v4.1 ATGAGGAAAACAATGGGGAGAAAGAGCGGAACCAAGACGACACTGTTTTTCCTACTCATCTCTCTTATTTCTTTTCTCGCTTTCGCTCCCGTCTTCGCTC CTCTCCCTTCTTTCTCCTCCCACTACTCTCTCTCTCCTCGCCACCGCCACCACCACCACCGAAAGGTAGTGACCAGCACCGTCGCGGTTAAGCCTCGATC ATTCGAGATCGACGACGACAAGTTCTGGAAAGACGGCGAGTTTTTCAGGATCATCGGCGGCGACTTGCATTACTTTCGCATTCTTCCTCAGTACTGGGAA GATAGGTTGGTGAGAGTAAAGGCACTGGGATTGAATACTATTCAAACTTATGTGCCTTGGAATCTTCATGAGCCACAGCCTGGTAAACTAGTGTTTGAGG GGATTGCTGATCTTGTCTCTTTTCTCAAACTCTGCCACAAGCTTGATATTCTTGTCATGCTCCGACCCGGCCCATATATCTGTGGAGAGTGGGATTTGGG GGGCTTTCCAGCTTGGTTACTAGCCATCGAACCGCCTCTCAAATTGAGATCGTCTGATCCTGCTTACCTTCGATTGGTTGATAACTGGTGGGGAATCTTA CTTCCCAAGGTAGCTCCGTTTCTTTATAATAATGGAGGCCCAATCATAATGGTTCAGATCGAGAATGAGTTTGGTTCATATGGAGATGACAAAGCTTATC TTCATCACCTGGTCAAATTGGCCCGAGGACATCTTGGTGATGGTATCATTTTGTATACCACGGATGGAGGTTCTAGGGAAAATCTTGAGAAAGGAACCAT TCGAGGAGATGCTGTCTTTTCAACTGTAGACTTCACTACTGGTGATGATCCTTGGCCTATATTCAAGTTACAAAAGGAGTTCAATGCCCCTGGAAAATCA CCACCACTTTCTTCGGAGTTTTATACAGGTTGGCTGACACATTGGGGTGAGAAGAATGCAAAGACTGGTGCTGATTTTACTGCATCAGCCCTGGAAAAGA TATTGTCACAGAATGGCTCTGCTGTGCTTTATATGGTGCATGGTGGAACAAACTTTGGATTCTACAATGGAGCAAATACTGGTGTAGATGAGTCTGATTA CAAGCCAGACATCACTTCGTATGATTATGATGCACCAATCAGCGAATCTGGAGATGTGGAGAACGCAAAATTCAATGCACTGCGCAGGGTTATTGAGCTT CATACTGCAGCATCTCTTCCGTCTGTTCCTTCTGATAATGGAAAGATGGGATATGGACCTATTCAGTTACAGAAAACAGCATTCTTGTTTGATTTACTTG ACAATATTAATCCAGCTGATGTAGTTGAATCTGAAAATCCACTCTCAATGGAGTCTGTGGGACAGATGTTTGGATTTCTGTTATATGTTTCTGAGTACAC TCCAAAGGATGATAAAAGCGTTCTTCTCATACCAAAGGTGCATGATAGAGCTCAAGTGTTTACTTTATGCCATTCCGAGGACAATAACAGAAGACCAACA CATGTTGGTTCAATTGATAGGTTGTCAAGTAAAAAACTTGGCCTTCCTAATGCCAAATGTGCTTCGAACATCAGCTTATTTGTTTTGGTTGAAAATCAGG GTCATGTGAATTATGGACCATACATATTTGACAAGAAGGGAATTTTGTCTTCTGTTTTTCTGGATGGGAGTATTTTGCATGGATGGAAAATGATTCCCAT CCCTTTCCACAACCTGAACGAAGTTCCAAAAATCAATCTCATCATTGAAGTTGCACATTCAAGATTCATTACAGTATCTACTCAGAGAGAGTTAAAAGAT AAACCTGGGAATGTTTCTGAAGTACCAGCATTCTTCACTGGCCATTTCTTTATCGAGAATGCGAACCAGATTCATGATACTTTCATATCATTCAGTGGTT GGGGTAAAGGGATTGCAGTTGTTAATGATTTTAACATAGGAAGATATTGGCCGTCATTTGGTCCGCAATGCAATCTTTATGTCCCTGCTCCGATCCTTCG TCATGGAGAAAATGTTCTGGTCATACTGGAGTTAGAATCTCCCAACCCTGAGCTTGTCATACATTCAGTTGATCACCCAGACTTCACATGTGGTTCAAGT AAATCAAGCGTGCATCAGCTTTAG
AA sequence Show only first row Show all	>Potri.003G037000.2 pacid=42786287 polypeptide=Potri.003G037000.2.p locus=Potri.003G037000 ID=Potri.003G037000.2.v4.1 annot-version=v4.1 MRKTMGRKSGTKTTLFFLLISLISFLAFAPVFAPLPSFSSHYSLSPRHRHHHHRKVVTSTVAVKPRSFEIDDDKFWKDGEFFRIIGGDLHYFRILPQYWE DRLVRVKALGLNTIQTYVPWNLHEPQPGKLVFEGIADLVSFLKLCHKLDILVMLRPGPYICGEWDLGGFPAWLLAIEPPLKLRSSDPAYLRLVDNWWGIL LPKVAPFLYNNGGPIIMVQIENEFGSYGDDKAYLHHLVKLARGHLGDGIILYTTDGGSRENLEKGTIRGDAVFSTVDFTTGDDPWPIFKLQKEFNAPGKS PPLSSEFYTGWLTHWGEKNAKTGADFTASALEKILSQNGSAVLYMVHGGTNFGFYNGANTGVDESDYKPDITSYDYDAPISESGDVENAKFNALRRVIEL HTAASLPSVPSDNGKMGYGPIQLQKTAFLFDLLDNINPADVVESENPLSMESVGQMFGFLLYVSEYTPKDDKSVLLIPKVHDRAQVFTLCHSEDNNRRPT HVGSIDRLSSKKLGLPNAKCASNISLFVLVENQGHVNYGPYIFDKKGILSSVFLDGSILHGWKMIPIPFHNLNEVPKINLIIEVAHSRFITVSTQRELKD KPGNVSEVPAFFTGHFFIENANQIHDTFISFSGWGKGIAVVNDFNIGRYWPSFGPQCNLYVPAPILRHGENVLVILELESPNPELVIHSVDHPDFTCGSS KSSVHQL

---

DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT1G72990		BGAL17	beta-galactosidase 17 (.1.2)		Potri.003G037000 [exp]	0	1
AT5G24750			UDP-Glycosyltransferase superf...		Potri.003G021100 [exp]	4.47	0.7596
AT5G35930			AMP-dependent synthetase and l...		Potri.019G043800 [exp]	5.74	0.7576
AT2G40570			initiator tRNA phosphoribosyl ...		Potri.018G087300 [exp]	6.48	0.7023
AT1G52290		AtPERK15	proline-rich extensin-like rec...		Potri.003G053301 [exp]	12.48	0.6866
AT4G27290			S-locus lectin protein kinase ...		Potri.011G125200 [exp]	12.84	0.6870
AT3G55080			SET domain-containing protein ...		Potri.008G047400 [exp]	17.54	0.7056
AT4G31810			ATP-dependent caseinolytic (Cl...		Potri.006G264200 [exp]	18.43	0.7039
AT4G02570		AXR6, ATCUL1	AUXIN RESISTANT 6, cullin 1 (....		Potri.001G117200 [exp]	24.49	0.6474
AT2G02040		NTR1, ATPTR2-B	NITRATE TRANSPORTER 1, ARABIDO...		Potri.011G120000 [exp]	25.39	0.6785	NTR1.4
AT3G46960			RNA helicase, ATP-dependent, S...		Potri.009G041200 [exp]	25.92	0.6957

Compare expression of checked genes

Potri.003G037000 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.