Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol	PLDEPSILON.1
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G55180 1031 / 0 PLDALPHA4, PLDEPSILON phospholipase D alpha 4 (.1) AT5G25370 602 / 0 PLDALPHA3 phospholipase D alpha 3 (.1) AT3G15730 600 / 0 PLDALPHA1 phospholipase D alpha 1 (.1) AT1G52570 597 / 0 PLDALPHA2 phospholipase D alpha 2 (.1) AT4G11830 539 / 0 PLDGAMMA2 phospholipase D gamma 2 (.1.2) AT4G11840 531 / 7e-178 PLDGAMMA3 phospholipase D gamma 3 (.1) AT2G42010 531 / 3e-175 PLDBETA1 phospholipase D beta 1 (.1) AT4G00240 523 / 8e-174 PLDBETA2 phospholipase D beta 2 (.1) AT4G11850 520 / 3e-173 PLDGAMMA1, MEE54 maternal effect embryo arrest 54, phospholipase D gamma 1 (.1) AT4G35790 513 / 1e-170 ATPLDDELTA ARABIDOPSIS THALIANA PHOSPHOLIPASE D DELTA, phospholipase D delta (.1.2.3)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.003G032800 [exp] 607 / 0 AT3G15730 1419 / 0.0 phospholipase D alpha 1 (.1) Potri.018G131200 [exp] 603 / 0 AT1G52570 1204 / 0.0 phospholipase D alpha 2 (.1) Potri.001G193000 [exp] 594 / 0 AT1G52570 1412 / 0.0 phospholipase D alpha 2 (.1) Potri.006G253900 [exp] 590 / 0 AT3G15730 1144 / 0.0 phospholipase D alpha 1 (.1) Potri.002G016100 [exp] 540 / 0 AT4G35790 1194 / 0.0 ARABIDOPSIS THALIANA PHOSPHOLIPASE D DELTA, phospholipase D delta (.1.2.3) Potri.003G015000 [exp] 538 / 2e-180 AT4G35790 1088 / 0.0 ARABIDOPSIS THALIANA PHOSPHOLIPASE D DELTA, phospholipase D delta (.1.2.3) Potri.005G246000 [exp] 533 / 8e-179 AT4G35790 1170 / 0.0 ARABIDOPSIS THALIANA PHOSPHOLIPASE D DELTA, phospholipase D delta (.1.2.3) Potri.001G112100 [exp] 528 / 1e-176 AT2G42010 1307 / 0.0 phospholipase D beta 1 (.1) Potri.002G152100 [exp] 531 / 1e-174 AT2G42010 1438 / 0.0 phospholipase D beta 1 (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10036361 [exp] 1083 / 0 AT1G55180 968 / 0.0 phospholipase D alpha 4 (.1) Lus10031634 [exp] 616 / 0 AT3G15730 1380 / 0.0 phospholipase D alpha 1 (.1) Lus10033706 [exp] 615 / 0 AT3G15730 1382 / 0.0 phospholipase D alpha 1 (.1) Lus10018575 [exp] 613 / 0 AT3G15730 1388 / 0.0 phospholipase D alpha 1 (.1) Lus10039806 [exp] 612 / 0 AT3G15730 1389 / 0.0 phospholipase D alpha 1 (.1) Lus10041787 [exp] 599 / 0 AT1G52570 1087 / 0.0 phospholipase D alpha 2 (.1) Lus10006819 [exp] 536 / 7e-177 AT2G42010 1465 / 0.0 phospholipase D beta 1 (.1) Lus10012699 [exp] 528 / 1e-176 AT4G35790 1075 / 0.0 ARABIDOPSIS THALIANA PHOSPHOLIPASE D DELTA, phospholipase D delta (.1.2.3) Lus10041855 [exp] 528 / 2e-176 AT4G35790 1280 / 0.0 ARABIDOPSIS THALIANA PHOSPHOLIPASE D DELTA, phospholipase D delta (.1.2.3) Lus10006718 [exp] 526 / 5e-176 AT2G42010 1264 / 0.0 phospholipase D beta 1 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0154 [poplar] [flax] C2 PF00168 [poplar] [flax] C2 C2 domain CL0479 [poplar] [flax] PLD PF00614 [poplar] [flax] PLDc Phospholipase D Active site motif CL0479 [poplar] [flax] PF12357 [poplar] [flax] PLD_C Phospholipase D C terminal CL0479 [poplar] [flax] PLD PF13091 [poplar] [flax] PLDc_2 PLD-like domain
Representative CDS sequence Show only first row Show all	>Potri.003G037700.1 pacid=42786749 polypeptide=Potri.003G037700.1.p locus=Potri.003G037700 ID=Potri.003G037700.1.v4.1 annot-version=v4.1 ATGGAAGGAAAACAAAAATTCCTCCATGGAACACTAGAAGCTACCATCTTTGATGCAACACCTTATACACCACCATTTCCCTTCAATTGTATATTTATGA ATGGAAGCCCCACTTACGTGACTATCAAGATAGGCAACAAGAAGGTAGCAAAGACGAGCCATGAATGTGATCGAGTTTGGAATCAAACTTTTCATATTCT CTGTGCTCATTCTCTGGATTCAACCATCACCATCACAATGAAAACAAAGTGCTCCATCTTGGGAAAATTCCACATCCAAGCGCATAAGATTGTCACCGAG GCAAGCCTAATTAATGGCTTCTTTCCACTGGTCATGGAAAACGGAAAGCCGAATCCTCAACTCAAACTCAGGTTCATGCTGTGGTTTAAACCAGCAGAAC TTGAGACAACTTGGGCAAAAATACTCGACAACGGTGAATTCCAGGGACTAAGAAACGCTACATTTCCTCAAAGATCCAACTGTCATGTTACACTCTATCA AGATGCTCACCATTGCTCGAGTTTTAAGCCTCCATTTGATCTTTGTGGATCTCCTACAAAATTATGGGAGGATGTTTACAAAGCCGTTGAAGGAGCAAAG CATTTGATATATATTGCAGGCTGGTCTTTCAATCCTAAGATGGTGCTAGTTAGGGATCCTGAAACTGACATGCCTCATGCTAGAGGAGTAATGCTTGGTG AGTTGTTGAAGCGAAAAGGAGAGGAAGGTGTGGCAGTGAGAGTTATGCTTTGGGACGATGAAACATCCTTGCCATTCATTAAGAACAAAGGTGTAATGGG AGTTCACGATGAGGATGCCTTTGCTTACTTCAAACATACTAAAGTAATATGCAAATTATGCCCAAGATTGCACCATAAGTTCCCTACTCTCTTTGCTCAC CATCAGAAGACTATAACTGTGGATGCCAGAGCACGTGATTCGATAAGTGAGAGAGAAATAATGAGTTTTGTAGGTGGATTAGACCTTTGTGATGGCCGCT ATGACACAGAGAGACATTCCTTGTTTCACACACTCAACACAGAATCACATTGTTTTGATTTCTACCAGACAAATATTGCTGGTGCTAGTCTTCGCAAAGG AGGGCCTAGAGAGCCATGGCATGATGCTCATGCTTGTATTGTAGGTCAGGCTGCTTTGGATGTACTAACCAACTTTGAGCAAAGGTGGAATAAGCAATGT GACGGTTCTGTATTAGTCCCTATCAGCTCCATACCAAATCTTATGCACCAGCCTTTTCCTTCAAGCGTTTCCAATGACAGAAATTGGAAAGTGCAAGTTT TTCGGTCAATCGACCATGTTTCGGCAATCCATTTGGCTAGAAACTTGAGGGTGGAGCGAAGTATACATGAAGCTTATGTAGAAGCGATTAGGCGTGCAGA GAGGTTTATATACATTGAAAACCAATATTTCATAGGAGGGTGTCAATTGTGGGATGAGGATAGGCACTGTGGATGCACAAATCTAATACCTATTGAGATT GCACTCAAGGTAGTGAACAAGATCAGAGCAAAAGAGAGATTTGCAGTGTATATATTGATGCCAATGTGGCCTGAAGGGGTGCCTGACAGTGAACCAGTTC AGGATATATTGCATTGGACTAGACAAACAATGGCAATGATGTACAAGCTAGTAGGAGAAGCATTACAAGAAAGTGGTGAGCCAGGACACCCAAGAGATTA CCTGAACTTCTTTTGCCTTGCAAATAGGGAAGAGGAGAACAAGGGAGAGCTTGTTCCTCCATATTCACCGCATCCCTCAACACAATATTGGAATGCACAA AAGCATAGGAGGTTCATGGTATATGTCCATTCCAAGCTCATGATAGTGGACGACGCTTACATGTTGATAGGATCTGCAAATGTGAATCAAAGATCAATGG ACGGCAGACGTGACACTGAAATTGCAATAGGATGCTACCAACCCAAAAATGGTGAAAACACGAGAAATCCTCGTGACATCCTAGCATACCGTATGTCGCT GTGGTATGAACACACAGGACTTGATGAAGAAATTTTCCTAGAGCCTGAAAGCTTGGCATGTGCACAAAGGATGCGTCTAGTAGGGGAGCAAATGTGGAAC GTTTACGCTGGTGAAGAAGTTGTGGACATGGAAGGTGTGCACCTGGTAAACTATCCTTTGAGAGTAACTAAGGATGGTGCTGTTGAAGATCTTGTTGATG GAGGTGGTAACTTTCCTGATACTAAGAGTCCTGTCAAGGGGAGAAGATCAAACATGCTACCTCCTATTTTCACTACTTGA
AA sequence Show only first row Show all	>Potri.003G037700.1 pacid=42786749 polypeptide=Potri.003G037700.1.p locus=Potri.003G037700 ID=Potri.003G037700.1.v4.1 annot-version=v4.1 MEGKQKFLHGTLEATIFDATPYTPPFPFNCIFMNGSPTYVTIKIGNKKVAKTSHECDRVWNQTFHILCAHSLDSTITITMKTKCSILGKFHIQAHKIVTE ASLINGFFPLVMENGKPNPQLKLRFMLWFKPAELETTWAKILDNGEFQGLRNATFPQRSNCHVTLYQDAHHCSSFKPPFDLCGSPTKLWEDVYKAVEGAK HLIYIAGWSFNPKMVLVRDPETDMPHARGVMLGELLKRKGEEGVAVRVMLWDDETSLPFIKNKGVMGVHDEDAFAYFKHTKVICKLCPRLHHKFPTLFAH HQKTITVDARARDSISEREIMSFVGGLDLCDGRYDTERHSLFHTLNTESHCFDFYQTNIAGASLRKGGPREPWHDAHACIVGQAALDVLTNFEQRWNKQC DGSVLVPISSIPNLMHQPFPSSVSNDRNWKVQVFRSIDHVSAIHLARNLRVERSIHEAYVEAIRRAERFIYIENQYFIGGCQLWDEDRHCGCTNLIPIEI ALKVVNKIRAKERFAVYILMPMWPEGVPDSEPVQDILHWTRQTMAMMYKLVGEALQESGEPGHPRDYLNFFCLANREEENKGELVPPYSPHPSTQYWNAQ KHRRFMVYVHSKLMIVDDAYMLIGSANVNQRSMDGRRDTEIAIGCYQPKNGENTRNPRDILAYRMSLWYEHTGLDEEIFLEPESLACAQRMRLVGEQMWN VYAGEEVVDMEGVHLVNYPLRVTKDGAVEDLVDGGGNFPDTKSPVKGRRSNMLPPIFTT

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT1G55180		PLDALPHA4, PLDE...	phospholipase D alpha 4 (.1)		Potri.003G037700 [exp]	0	1	PLDEPSILON.1
AT3G47570			Leucine-rich repeat protein ki...		Potri.005G030800 [exp]	2.00	0.7899	RGA.58
AT5G18980			ARM repeat superfamily protein...		Potri.008G200500 [exp]	4.89	0.7320
AT3G47400			Plant invertase/pectin methyle...		Potri.015G127800 [exp]	7.74	0.7190	PME.7
AT5G67090			Subtilisin-like serine endopep...		Potri.014G026700 [exp]	8.94	0.6704	Pt-AG12.3
AT1G05310			Pectin lyase-like superfamily ...		Potri.016G017700 [exp]	21.81	0.6466
AT4G02680		EOL1	ETO1-like 1 (.1)		Potri.002G048300 [exp]	24.81	0.6594
AT3G45010		SCPL48	serine carboxypeptidase-like 4...		Potri.004G215400 [exp]	27.82	0.6615
AT5G50920		CLPC1, CLPC, AT...	HEAT SHOCK PROTEIN 93-V, DE-RE...		Potri.005G197400 [exp]	33.04	0.6522
AT5G03260		LAC11	laccase 11 (.1)		Potri.007G023300 [exp]	34.07	0.6030
AT2G44260			Plant protein of unknown funct...		Potri.009G025102 [exp]	34.69	0.6869

Compare expression of checked genes

Potri.003G037700 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.