Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G55170 259 / 2e-86 unknown protein AT3G14750 150 / 3e-43 unknown protein AT1G67170 124 / 4e-33 unknown protein AT2G30120 91 / 2e-21 unknown protein AT5G61920 71 / 2e-14 unknown protein
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G382700 [exp] 160 / 3e-47 AT3G14750 297 / 6e-100 unknown protein Potri.006G178100 [exp] 137 / 1e-38 AT5G61920 155 / 3e-46 unknown protein Potri.001G281400 [exp] 136 / 1e-38 AT2G30120 161 / 4e-48 unknown protein Potri.009G076700 [exp] 137 / 2e-38 AT3G14750 173 / 8e-52 unknown protein Potri.017G109700 [exp] 136 / 7e-37 AT1G67170 282 / 3e-91 unknown protein Potri.018G100100 [exp] 52 / 3e-08 ND /
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10015629 [exp] 327 / 4e-113 AT1G55170 236 / 2e-77 unknown protein Lus10037647 [exp] 324 / 7e-112 AT1G55170 233 / 6e-76 unknown protein Lus10015628 [exp] 268 / 2e-90 AT1G55170 211 / 3e-68 unknown protein Lus10013698 [exp] 163 / 2e-48 AT3G14750 298 / 3e-100 unknown protein Lus10038143 [exp] 162 / 5e-48 AT3G14750 275 / 1e-91 unknown protein Lus10005563 [exp] 157 / 2e-46 AT3G14750 288 / 2e-96 unknown protein Lus10035371 [exp] 129 / 4e-36 AT1G67170 284 / 2e-95 unknown protein Lus10030976 [exp] 129 / 2e-34 AT1G67170 294 / 1e-96 unknown protein Lus10034321 [exp] 116 / 3e-30 AT1G55170 89 / 3e-20 unknown protein Lus10041450 [exp] 110 / 7e-29 AT1G55170 84 / 4e-19 unknown protein
PFAM info
Representative CDS sequence Show only first row Show all	>Potri.003G037900.1 pacid=42786146 polypeptide=Potri.003G037900.1.p locus=Potri.003G037900 ID=Potri.003G037900.1.v4.1 annot-version=v4.1 ATGGCAGGGAGAAATCGCATCCCTCGTGAACTTTATAACGACAGGCGGGGATTCATCGTTGAACGACCATTCATTCGTGGCCATCCGATGCCACAGCCTG CTTTCTTGGAGGAGGAGCTTGAGATGCAACATGCTGAAATCCGACGCCTCTTGGGTGATAACCGTAGGCTGATCGAAGATCGTATGGGTCTGCAGCAAGA GCTTGGCGCTGCAAAGGAAGAGCTTCATCGAATGAATATTGTGATTGCTGAAATTCGTGCAGAACAAGATGTGCTTATCAAGAAGGGATTGAAGCTTGAG GCTGATCTTCGTGTGACTGAGCCTTTGAAGAATGAGACTGTACAACTCCGTGCGGAGATTCAGAAGCTGAGTAGTTCGAAGCAGGAACTGGTTGGGCAAG TCCAAACCCTGAAACAAGATGTTGCGAGACTGCAAGCTGATAATCACCAAATTCCTCTTTTACGGGGTGAGATTGAGGGCTTGCACCAGGAGCTAATGCA TACTAGAGCTGCAATTGAATATGAAAAGAAGGCCAACATTGAGTTGGTGGAGCAGAGACAATCAATGGAGAAGAATTTGGTTTCCATGGCACGTGAAGTT GAAAAGCTACGTGTAGAGCTTTCTAGTTCTGATAATCGACCACCCTGGAGTGCTGCTGCTGGTGGATCATATGGGATGAAGTTCGGTATTCCAGAAGGGG CTTTTCCTCCTCCATATGGGGATGGGTATGCAGTTCATCTGGGTGCTGCTGACAAGGGTCCTTTCTATGGCCCTGGTCCTGCTTCATGGGAGAAGCCCCG CATGCCTCGTCGTTGA
AA sequence Show only first row Show all	>Potri.003G037900.1 pacid=42786146 polypeptide=Potri.003G037900.1.p locus=Potri.003G037900 ID=Potri.003G037900.1.v4.1 annot-version=v4.1 MAGRNRIPRELYNDRRGFIVERPFIRGHPMPQPAFLEEELEMQHAEIRRLLGDNRRLIEDRMGLQQELGAAKEELHRMNIVIAEIRAEQDVLIKKGLKLE ADLRVTEPLKNETVQLRAEIQKLSSSKQELVGQVQTLKQDVARLQADNHQIPLLRGEIEGLHQELMHTRAAIEYEKKANIELVEQRQSMEKNLVSMAREV EKLRVELSSSDNRPPWSAAAGGSYGMKFGIPEGAFPPPYGDGYAVHLGAADKGPFYGPGPASWEKPRMPRR

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT1G55170			unknown protein		Potri.003G037900 [exp]	0	1
AT3G53970			proteasome inhibitor-related (...		Potri.016G103800 [exp]	2.64	0.7808
AT4G13630			Protein of unknown function, D...		Potri.002G242900 [exp]	3.74	0.8336
					Potri.001G077400 [exp]	6.00	0.8279
AT1G67600			Acid phosphatase/vanadium-depe...		Potri.010G056600 [exp]	7.07	0.7727
AT4G35140			Transducin/WD40 repeat-like su...		Potri.009G139000 [exp]	7.34	0.7433
AT1G01350	C3HZnF		Zinc finger (CCCH-type/C3HC4-t...		Potri.014G097300 [exp]	8.06	0.8164
AT1G10660			unknown protein		Potri.010G042600 [exp]	8.06	0.7617
AT3G09350		Fes1A	Fes1A (.1.2.3)		Potri.016G100500 [exp]	12.16	0.8242
AT3G05700			Drought-responsive family prot...		Potri.014G125500 [exp]	13.85	0.8025
AT1G27760		SAT32, ATSAT32	SALT-TOLERANCE 32, interferon-...		Potri.014G016800 [exp]	15.90	0.7634

Compare expression of checked genes

Potri.003G037900 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.