Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G13730 661 / 0 CYP90D1 "cytochrome P450, family 90, subfamily D, polypeptide 1", cytochrome P450, family 90, subfamily D, polypeptide 1 (.1) AT4G36380 525 / 0 ROT3 ROTUNDIFOLIA 3, Cytochrome P450 superfamily protein (.1) AT5G05690 377 / 6e-127 CBB3, DWF3, CYP90A1, CYP90A, CPD DWARF 3, CYTOCHROME P450 90A1, CONSTITUTIVE PHOTOMORPHOGENIC DWARF, CABBAGE 3, Cytochrome P450 superfamily protein (.1.2.3) AT3G50660 320 / 9e-104 PSC1, CYP90B1, CLM, SNP2, DWF4, SAV1 SUPPRESSOR OF NPH4 2, SHADE AVOIDANCE 1, PARTIALLY SUPPRESSING COI1 INSENSITIVITY TO JA 1, DWARF 4, CYTOCHROME P450 90B1, CLOMAZONE-RESISTANT, Cytochrome P450 superfamily protein (.1) AT5G38970 293 / 4e-94 ATBR6OX, CYP85A1, BR6OX1 brassinosteroid-6-oxidase 1 (.1.2.3) AT1G73340 285 / 2e-90 Cytochrome P450 superfamily protein (.1) AT3G30180 278 / 3e-88 CYP85A2, BR6OX2 brassinosteroid-6-oxidase 2 (.1) AT4G19230 270 / 6e-85 CYP707A1 "cytochrome P450, family 707, subfamily A, polypeptide 1", cytochrome P450, family 707, subfamily A, polypeptide 1 (.1.2) AT5G45340 261 / 6e-82 CYP707A3 "cytochrome P450, family 707, subfamily A, polypeptide 3", cytochrome P450, family 707, subfamily A, polypeptide 3 (.1.2) AT1G12740 261 / 1e-81 CYP87A2 "cytochrome P450, family 87, subfamily A, polypeptide 2", cytochrome P450, family 87, subfamily A, polypeptide 2 (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G200100 [exp] 896 / 0 AT3G13730 663 / 0.0 "cytochrome P450, family 90, subfamily D, polypeptide 1", cytochrome P450, family 90, subfamily D, polypeptide 1 (.1) Potri.007G018400 [exp] 526 / 0 AT4G36380 626 / 0.0 ROTUNDIFOLIA 3, Cytochrome P450 superfamily protein (.1) Potri.010G189800 [exp] 374 / 1e-125 AT5G05690 717 / 0.0 DWARF 3, CYTOCHROME P450 90A1, CONSTITUTIVE PHOTOMORPHOGENIC DWARF, CABBAGE 3, Cytochrome P450 superfamily protein (.1.2.3) Potri.008G067500 [exp] 372 / 6e-125 AT5G05690 710 / 0.0 DWARF 3, CYTOCHROME P450 90A1, CONSTITUTIVE PHOTOMORPHOGENIC DWARF, CABBAGE 3, Cytochrome P450 superfamily protein (.1.2.3) Potri.005G124000 [exp] 319 / 9e-104 AT3G50660 738 / 0.0 SUPPRESSOR OF NPH4 2, SHADE AVOIDANCE 1, PARTIALLY SUPPRESSING COI1 INSENSITIVITY TO JA 1, DWARF 4, CYTOCHROME P450 90B1, CLOMAZONE-RESISTANT, Cytochrome P450 superfamily protein (.1) Potri.007G026500 [exp] 316 / 9e-103 AT3G50660 757 / 0.0 SUPPRESSOR OF NPH4 2, SHADE AVOIDANCE 1, PARTIALLY SUPPRESSING COI1 INSENSITIVITY TO JA 1, DWARF 4, CYTOCHROME P450 90B1, CLOMAZONE-RESISTANT, Cytochrome P450 superfamily protein (.1) Potri.001G341000 [exp] 301 / 6e-97 AT5G14400 424 / 6e-147 "cytochrome P450, family 724, subfamily A, polypeptide 1", cytochrome P450, family 724, subfamily A, polypeptide 1 (.1) Potri.014G171700 [exp] 297 / 2e-95 AT3G50660 408 / 1e-138 SUPPRESSOR OF NPH4 2, SHADE AVOIDANCE 1, PARTIALLY SUPPRESSING COI1 INSENSITIVITY TO JA 1, DWARF 4, CYTOCHROME P450 90B1, CLOMAZONE-RESISTANT, Cytochrome P450 superfamily protein (.1) Potri.017G154600 [exp] 296 / 4e-95 AT1G73340 714 / 0.0 Cytochrome P450 superfamily protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10028345 [exp] 521 / 0 AT4G36380 652 / 0.0 ROTUNDIFOLIA 3, Cytochrome P450 superfamily protein (.1) Lus10041794 [exp] 521 / 0 AT4G36380 643 / 0.0 ROTUNDIFOLIA 3, Cytochrome P450 superfamily protein (.1) Lus10006152 [exp] 436 / 4e-151 AT3G13730 378 / 2e-128 "cytochrome P450, family 90, subfamily D, polypeptide 1", cytochrome P450, family 90, subfamily D, polypeptide 1 (.1) Lus10040193 [exp] 363 / 7e-121 AT5G05690 687 / 0.0 DWARF 3, CYTOCHROME P450 90A1, CONSTITUTIVE PHOTOMORPHOGENIC DWARF, CABBAGE 3, Cytochrome P450 superfamily protein (.1.2.3) Lus10014850 [exp] 360 / 9e-120 AT5G05690 679 / 0.0 DWARF 3, CYTOCHROME P450 90A1, CONSTITUTIVE PHOTOMORPHOGENIC DWARF, CABBAGE 3, Cytochrome P450 superfamily protein (.1.2.3) Lus10031866 [exp] 287 / 2e-91 AT1G73340 624 / 0.0 Cytochrome P450 superfamily protein (.1) Lus10000647 [exp] 286 / 3e-91 AT3G30180 540 / 0.0 brassinosteroid-6-oxidase 2 (.1) Lus10005075 [exp] 278 / 9e-89 AT5G38970 644 / 0.0 brassinosteroid-6-oxidase 1 (.1.2.3) Lus10016065 [exp] 280 / 1e-88 AT3G50660 399 / 3e-134 SUPPRESSOR OF NPH4 2, SHADE AVOIDANCE 1, PARTIALLY SUPPRESSING COI1 INSENSITIVITY TO JA 1, DWARF 4, CYTOCHROME P450 90B1, CLOMAZONE-RESISTANT, Cytochrome P450 superfamily protein (.1) Lus10014240 [exp] 279 / 1e-88 AT3G30180 531 / 0.0 brassinosteroid-6-oxidase 2 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF00067 [poplar] [flax] p450 Cytochrome P450
Representative CDS sequence Show only first row Show all	>Potri.003G038200.1 pacid=42785647 polypeptide=Potri.003G038200.1.p locus=Potri.003G038200 ID=Potri.003G038200.1.v4.1 annot-version=v4.1 ATGGACAGTTTATTGTGGATTTTGTTAGCAATCTTCTTGTCCTGCAGTAGTACCATAATATTTCTGTACAGGAACAGCAGCTGGTTTAGTAATAGAATTA TGACGATGGTGATGATGATGATCAAATCATCATCAATGTACGAAAAAACCTTACTTCCTTTAGGCGCTCTTGGATGGCCCTTTATCGGCGAAACCATCGA CTTCGTTTCCTGTGCTTACTCAGACCGCCCTGAAAGCTTCATGGATAAACGTCGTCGCATGTACGGGAAGGTGTTCAAGTCACATATATTTGGAAGTCCT ACAATAGTATCAACAGATGCAGAAGTGAGCAAATTTATACTACAAAGTGATGCAAGGTTGTTCGTTCCTTCTTACCCGAAATCTCTCACTGAGTTGATGG GAAAATCTTCAATTTTGCTCATCAATGGGAGCTTACAAAGGAGAATTCATGGACTCATAGGTGCCTTCTTCAAGTCACCTCATCTCAAAGCTCAAATCAC TCGAGACATGCAAAGTTATGTTCAAGAATCAATGGAGAAATGGAGAGAAGACCACCCCATTTTCATACAAGATGAAACCAAGAATATAGCCTTTCAAGTG TTGGTCAAGGCATTGATTAGTTTGGATCCTGGTGAAGAAATGGAGTTGCTAAAAAAACAGTTCCAAGAATTCATTGCAGGGCTCATGTCTTTACCTTTAA AAAACATTCCTGGAAGCCAACTTTATCGATCATTACAGGCAAAGAAAAAAATGGTGAAGTTAGTGCAAAAAATTATCAAATCTAAGAGAGATCATGGGAT GATTTCAATGGTACCAAAAGATTTAGTGCAAGTGTTGCTTAACGATGCAAGCGAACAACTAACAGATGATTTGATAGCTGATAATATGATCGACATGATG ATACCTGGCGAAGATTCAGTCCCAGTCCTTATGACTCTTGCTGTTAAATACCTTTCAGACTGCCCTCCTGCGCTACACCAATTGACGGAGGAGAACATGA AATTGAAAAGTCTCAAAGCTCAGCATGGGGAGCCGATGTGCTGGAGTGATTATTTATCTCTACCCTTTACACAAACAGTGATTACAGAAACCCTAAGAAT GGGGAACATTATAATTGGGGTGATGAGAAAGGCGATGAAGGACATAGAGATTAAAGGGTATTTGATACCCAAAGGATGGTGTGCTTTTGCATACTTCAGA TCAGTTCATCTTGATGAAAACAACTATGAGTGGCCTTACCAGTTCAATCCATGGAGGTGGCAAGACAAGGATATGAGCAATAGTAGCTTCACTCCATTTG GAGGAGGACAAAGATTATGTCCTGGACTTGACTTGGCCAGGCTGGAAGCTTCAATTTTCTTGCACCACTTTGTCACCCAGTTTAGATGGGTGGCTGAGGA CGATACTATTGTAAATTTCCCTACTGTGAGGATGAAGAGAAGAATGCCGATTTGGGTCAAAAGGAGAGGAGAAAATTAA
AA sequence Show only first row Show all	>Potri.003G038200.1 pacid=42785647 polypeptide=Potri.003G038200.1.p locus=Potri.003G038200 ID=Potri.003G038200.1.v4.1 annot-version=v4.1 MDSLLWILLAIFLSCSSTIIFLYRNSSWFSNRIMTMVMMMIKSSSMYEKTLLPLGALGWPFIGETIDFVSCAYSDRPESFMDKRRRMYGKVFKSHIFGSP TIVSTDAEVSKFILQSDARLFVPSYPKSLTELMGKSSILLINGSLQRRIHGLIGAFFKSPHLKAQITRDMQSYVQESMEKWREDHPIFIQDETKNIAFQV LVKALISLDPGEEMELLKKQFQEFIAGLMSLPLKNIPGSQLYRSLQAKKKMVKLVQKIIKSKRDHGMISMVPKDLVQVLLNDASEQLTDDLIADNMIDMM IPGEDSVPVLMTLAVKYLSDCPPALHQLTEENMKLKSLKAQHGEPMCWSDYLSLPFTQTVITETLRMGNIIIGVMRKAMKDIEIKGYLIPKGWCAFAYFR SVHLDENNYEWPYQFNPWRWQDKDMSNSSFTPFGGGQRLCPGLDLARLEASIFLHHFVTQFRWVAEDDTIVNFPTVRMKRRMPIWVKRRGEN

---

DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT3G13730		CYP90D1	"cytochrome P450, family 90, s...		Potri.003G038200 [exp]	0	1
AT1G06620			2-oxoglutarate (2OG) and Fe(II...		Potri.010G073166 [exp]	10.67	0.9298
AT2G24580			FAD-dependent oxidoreductase f...		Potri.006G272800 [exp]	12.40	0.9057
AT4G00030			Plastid-lipid associated prote...		Potri.014G058400 [exp]	20.88	0.9242
AT1G44800			nodulin MtN21 /EamA-like trans...		Potri.002G040200 [exp]	24.18	0.9069
AT5G62140			unknown protein		Potri.012G134500 [exp]	33.46	0.9236
AT3G21790			UDP-Glycosyltransferase superf...		Potri.006G007350 [exp]	36.66	0.9156
AT4G35220			Cyclase family protein (.1)		Potri.001G301600 [exp]	40.12	0.9087
					Potri.006G162650 [exp]	43.24	0.8887
					Potri.018G137700 [exp]	50.01	0.9014
AT1G50020			unknown protein		Potri.001G289400 [exp]	54.84	0.8948

Compare expression of checked genes

Potri.003G038200 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.