Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G55150 792 / 0 DEA(D/H)-box RNA helicase family protein (.1) AT5G63120 649 / 0 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1.2) AT3G01540 440 / 5e-149 ATDRH1, DRH1 ARABIDOPSIS THALIANA DEAD BOX RNA HELICASE 1, DEAD box RNA helicase 1 (.1.2.3.4) AT5G14610 427 / 8e-144 DEAD box RNA helicase family protein (.1.2) AT3G06480 419 / 8e-136 DEAD box RNA helicase family protein (.1) AT2G47330 367 / 5e-119 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) AT1G20920 367 / 4e-118 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1.2) AT1G31970 333 / 2e-108 STRS1 STRESS RESPONSE SUPPRESSOR 1, DEA(D/H)-box RNA helicase family protein (.1) AT3G09620 327 / 9e-102 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) AT2G42520 309 / 4e-98 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.015G083000 [exp] 669 / 0 AT5G63120 707 / 0.0 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1.2) Potri.012G084600 [exp] 669 / 0 AT5G63120 704 / 0.0 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1.2) Potri.017G071400 [exp] 446 / 3e-149 AT5G14610 792 / 0.0 DEAD box RNA helicase family protein (.1.2) Potri.001G347100 [exp] 441 / 4e-147 AT5G14610 823 / 0.0 DEAD box RNA helicase family protein (.1.2) Potri.010G152400 [exp] 426 / 8e-138 AT3G06480 801 / 0.0 DEAD box RNA helicase family protein (.1) Potri.002G194600 [exp] 382 / 2e-124 AT2G47330 1048 / 0.0 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) Potri.002G003600 [exp] 381 / 2e-120 AT1G20920 1201 / 0.0 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1.2) Potri.005G257400 [exp] 375 / 3e-118 AT1G20920 1253 / 0.0 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1.2) Potri.003G098800 [exp] 337 / 8e-110 AT1G31970 726 / 0.0 STRESS RESPONSE SUPPRESSOR 1, DEA(D/H)-box RNA helicase family protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10037646 [exp] 828 / 0 AT1G55150 843 / 0.0 DEA(D/H)-box RNA helicase family protein (.1) Lus10015627 [exp] 824 / 0 AT1G55150 845 / 0.0 DEA(D/H)-box RNA helicase family protein (.1) Lus10043334 [exp] 672 / 0 AT5G63120 752 / 0.0 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1.2) Lus10019484 [exp] 670 / 0 AT5G63120 757 / 0.0 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1.2) Lus10032135 [exp] 436 / 6e-147 AT5G14610 849 / 0.0 DEAD box RNA helicase family protein (.1.2) Lus10032133 [exp] 435 / 2e-146 AT5G14610 850 / 0.0 DEAD box RNA helicase family protein (.1.2) Lus10014553 [exp] 421 / 1e-139 AT5G14610 833 / 0.0 DEAD box RNA helicase family protein (.1.2) Lus10001272 [exp] 426 / 2e-137 AT5G14610 665 / 0.0 DEAD box RNA helicase family protein (.1.2) Lus10009474 [exp] 403 / 8e-129 AT3G06480 744 / 0.0 DEAD box RNA helicase family protein (.1) Lus10037527 [exp] 375 / 7e-122 AT2G47330 1120 / 0.0 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0023 [poplar] [flax] P-loop_NTPase PF00271 [poplar] [flax] Helicase_C Helicase conserved C-terminal domain CL0023 [poplar] [flax] P-loop_NTPase PF04851 [poplar] [flax] ResIII Type III restriction enzyme, res subunit
Representative CDS sequence Show only first row Show all	>Potri.003G038300.1 pacid=42785965 polypeptide=Potri.003G038300.1.p locus=Potri.003G038300 ID=Potri.003G038300.1.v4.1 annot-version=v4.1 ATGAGCCGATACGACAGCCGTTCCGGCGACCCAACTTCTTACCGTGACCGGAGAAGTGGTTCAGGTTTCGGCGGTGCTTCCAGTTATGGTGGTGGCTCCA CTCGGCCATCATCCGAGAGGAGGGAGCATGGTCGTGGTGACTCGCCTGCGAAGTCGGATTTAGATGGGCTGACTCCATTTGAGAAGAATTTCCATGTGGA ATCCCCATCAGTGGCAGCAATGTCAGAAAGGGATGTGGAGGAGTATAGGCTACGCAGGGAGATTACTGTAGAGGGCCGTGATGTTCCCAAGCCTGTTAAG AGTTTTCATGATGTCGGCTTTCCAGATTATGTTCTGCAAGAAATTTCAAAAGCTGGGTTTACTGAACCTACACCTATACAAGCTCAAGGATGGCCAATGG CTTTGAAGGGCCGTGATCTCATTGGTATTGCTGAAACAGGATCTGGGAAGACACTTGCTTACCTATTGCCTGCAATTATCCATGTTAATGCCCAACCATT TTTAGCTCCTGGAGATGGACCTATCGTATTAGTTTTAGCTCCAACACGTGAACTTGCTGTTCAGATACAACAAGAAGCAGCTAAATTTGGTGCATCATCA AGGATTAAAAATACATGCATATATGGTGGGGTTCCAAAGGGACCTCAAGTGCGTGACCTCCAGAAAGGTGTTGAAATTGTCATTGCTACACCGGGAAGGT TGATTGATATGATGGAGTCGCATCATACAAATTTGCGAAGGGTTACTTATCTGGTTCTGGATGAAGCAGATCGGATGTTAGACATGGGGTTTGAGCCTCA GATACGAAAAATTGTTTCACAGATTCGACCAGATCGTCAAACTTTGTACTGGAGTGCAACTTGGCCTAAAGAGGTTGAACAACTGGCACGGCAGTCTCTT TACAATCCATACAAAGTGATAATAGGATCTCCAGATTTAAAAGCTAATCATGCAATACGTCAACATGTGGACATTGTTTCGGAGAATCAGAAATATAACA AATTGGTGAAGTTGCTGGAAGATATCATGGATGGTAGTCGTATTCTGATTTTTATGGATACCAAGAAAGGTTGTGACCAGATCACTCGACAACTTCGCAT GGATGGGTGGCCTGCTCTCTCAATTCATGGAGATAAAAGTCAAGCAGAAAGAGACTGGGTCCTGTCTGAGTTCAAAGCTGGCAAGAGTCCTATAATGACT GCAACAGATGTTGCTGCTCGTGGATTAGATGTGAAGGATGTTAAATATGTGATCAATTATGACTTCCCTGGGTCCCTAGAGGATTATGTTCACCGCATTG GCCGGACAGGAAGGGCAGGAGCAAAAGGAACAGCTTACACTTTCTTCACAGCTGGAAATGCCAGATTTGCTAAAGAACTTGTCACCATACTCGAGGAAGC TGGACAGAAGGTCAGTCCAGAATTGACAGCAATGGCTCGTGGTGCACCTCCTCTACTATCTGGCCATGGGGGTTTCCGAGATCGTGGGAGGGGTTATAGT GGTGGCCGATCTTGGAACTAA
AA sequence Show only first row Show all	>Potri.003G038300.1 pacid=42785965 polypeptide=Potri.003G038300.1.p locus=Potri.003G038300 ID=Potri.003G038300.1.v4.1 annot-version=v4.1 MSRYDSRSGDPTSYRDRRSGSGFGGASSYGGGSTRPSSERREHGRGDSPAKSDLDGLTPFEKNFHVESPSVAAMSERDVEEYRLRREITVEGRDVPKPVK SFHDVGFPDYVLQEISKAGFTEPTPIQAQGWPMALKGRDLIGIAETGSGKTLAYLLPAIIHVNAQPFLAPGDGPIVLVLAPTRELAVQIQQEAAKFGASS RIKNTCIYGGVPKGPQVRDLQKGVEIVIATPGRLIDMMESHHTNLRRVTYLVLDEADRMLDMGFEPQIRKIVSQIRPDRQTLYWSATWPKEVEQLARQSL YNPYKVIIGSPDLKANHAIRQHVDIVSENQKYNKLVKLLEDIMDGSRILIFMDTKKGCDQITRQLRMDGWPALSIHGDKSQAERDWVLSEFKAGKSPIMT ATDVAARGLDVKDVKYVINYDFPGSLEDYVHRIGRTGRAGAKGTAYTFFTAGNARFAKELVTILEEAGQKVSPELTAMARGAPPLLSGHGGFRDRGRGYS GGRSWN

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT1G55150			DEA(D/H)-box RNA helicase fami...		Potri.003G038300 [exp]	0	1
AT4G38130		ATHDA19, ATHD1,...	ARABIDOPSIS HISTONE DEACETYLAS...		Potri.009G170700 [exp]	1.00	0.8492	HDA902,RPD3.1
AT4G29510		ATPRMT1B, ATPRM...	PROTEIN ARGININE METHYLTRANSFE...		Potri.018G067200 [exp]	2.44	0.8355	PRMT901
AT5G51140			Pseudouridine synthase family ...		Potri.015G101300 [exp]	5.47	0.8120
AT5G11860		SSP5	SCP1-like small phosphatase 5 ...		Potri.003G173700 [exp]	5.74	0.7929
AT2G19490			recA DNA recombination family ...		Potri.006G148700 [exp]	8.00	0.7965
AT4G01240			S-adenosyl-L-methionine-depend...		Potri.002G165300 [exp]	9.16	0.7994
AT2G17410	ARID		ARID/BRIGHT DNA-binding domain...		Potri.001G456500 [exp]	11.83	0.7939
AT4G00150	GRAS	ATHAM3, SCL6, L...	LOST MERISTEMS 3, ARABIDOPSIS ...		Potri.001G122800 [exp]	13.07	0.7941
AT5G55530			Calcium-dependent lipid-bindin...		Potri.011G088400 [exp]	14.69	0.7923
AT2G30140			UDP-Glycosyltransferase superf...		Potri.009G077500 [exp]	16.52	0.7904

Compare expression of checked genes

Potri.003G038300 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.