Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G55140 154 / 9e-48 Ribonuclease III family protein (.1.2) AT3G13740 147 / 1e-44 Ribonuclease III family protein (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G200300 [exp] 189 / 2e-61 AT1G55140 257 / 1e-86 Ribonuclease III family protein (.1.2)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10037645 [exp] 167 / 2e-52 AT1G55140 274 / 4e-93 Ribonuclease III family protein (.1.2) Lus10015626 [exp] 165 / 8e-52 AT1G55140 271 / 5e-92 Ribonuclease III family protein (.1.2)
PFAM info
Representative CDS sequence Show only first row Show all	>Potri.003G038400.24 pacid=42786161 polypeptide=Potri.003G038400.24.p locus=Potri.003G038400 ID=Potri.003G038400.24.v4.1 annot-version=v4.1 ATGCAAATTAATGATTTGTCATTCCTAACAAGGGTTGATGATCAAATGAAGGATTCGTTTATTTTTATCATTTTCAATTGGGATTGTTACTATTTTTTTC TTTTTGATTGGAATTTATGTGAAATTGTAGAACAATTGGATGATTCATATTTGGGATGTGAGAGATGGTTGCCAAGTCGGCCAAAAGTAGAGAAGCCTCC ATCAGTGTTTAATGCCGCGACTTTGGCTTATATTGATGATAGTATTTTTGAGCTATATGCTCGTAGGCACTTTTTGTTTCCTCCATTGAGTCTTGAGGAA CATAATGACTGTGTGATTGCAGTTGTACGCTGTGAAGCACAAGATGCATTGCTCCAGAAACTTCTCAATGATAATTACCTGTCAGAGGAAGAAAGGGGTG TTCTTCGTTTGGGAAAGAATGTTGGTTCAGCTAAAACATGA
AA sequence Show only first row Show all	>Potri.003G038400.24 pacid=42786161 polypeptide=Potri.003G038400.24.p locus=Potri.003G038400 ID=Potri.003G038400.24.v4.1 annot-version=v4.1 MQINDLSFLTRVDDQMKDSFIFIIFNWDCYYFFLFDWNLCEIVEQLDDSYLGCERWLPSRPKVEKPPSVFNAATLAYIDDSIFELYARRHFLFPPLSLEE HNDCVIAVVRCEAQDALLQKLLNDNYLSEEERGVLRLGKNVGSAKT

---

DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT1G55140			Ribonuclease III family protei...		Potri.003G038400 [exp]	0	1
AT5G54680	bHLH	bHLH105, ILR3	iaa-leucine resistant3, basic ...		Potri.011G031000 [exp]	1.41	0.8699
AT3G14205			Phosphoinositide phosphatase f...		Potri.001G163900 [exp]	3.74	0.8203
AT1G02680		TAF13	TBP-associated factor 13 (.1)		Potri.014G122500 [exp]	4.24	0.8237
AT1G10600		AMSH2	associated molecule with the S...		Potri.010G041200 [exp]	5.00	0.8238
AT1G22940		THIE, TH-1, TH1	THIAMINEE, THIAMINE REQUIRING ...		Potri.003G015700 [exp]	5.65	0.8265	Pt-TH1.1
AT1G54310			S-adenosyl-L-methionine-depend...		Potri.010G173800 [exp]	6.70	0.8278
AT2G42760			unknown protein		Potri.006G129800 [exp]	9.89	0.7904
AT5G61760		ATIPK2BETA	ARABIDOPSIS THALIANA INOSITOL ...		Potri.012G111400 [exp]	11.22	0.7864
AT4G14385			unknown protein		Potri.002G038700 [exp]	11.48	0.8069
AT1G78420			RING/U-box superfamily protein...		Potri.011G096000 [exp]	12.64	0.8199

Compare expression of checked genes

Potri.003G038400 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.