Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G17650 217 / 9e-71 GR2, GLYR2 glyoxylate reductase 2 (.1) AT3G25530 152 / 2e-46 GR1, GLYR1, GHBDH, ATGHBDH glyoxylate reductase 1 (.1.2) AT4G20930 45 / 4e-06 6-phosphogluconate dehydrogenase family protein (.1) AT4G29120 43 / 3e-05 6-phosphogluconate dehydrogenase family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.003G040800 [exp] 240 / 8e-80 AT1G17650 508 / 0.0 glyoxylate reductase 2 (.1) Potri.003G036600 [exp] 145 / 4e-46 AT1G17650 158 / 5e-49 glyoxylate reductase 2 (.1) Potri.014G197900 [exp] 143 / 1e-42 AT3G25530 463 / 1e-166 glyoxylate reductase 1 (.1.2) Potri.018G088000 [exp] 40 / 0.0005 AT4G29120 463 / 8e-165 6-phosphogluconate dehydrogenase family protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10037629 [exp] 209 / 5e-68 AT1G17650 486 / 9e-174 glyoxylate reductase 2 (.1) Lus10015612 [exp] 214 / 1e-66 AT1G17650 495 / 4e-172 glyoxylate reductase 2 (.1) Lus10012301 [exp] 138 / 6e-41 AT3G25530 434 / 3e-155 glyoxylate reductase 1 (.1.2) Lus10016077 [exp] 145 / 8e-41 AT3G57220 611 / 0.0 Glycosyl transferase family 4 protein (.1) Lus10023258 [exp] 42 / 7e-05 AT4G20930 479 / 4e-171 6-phosphogluconate dehydrogenase family protein (.1) Lus10038545 [exp] 41 / 0.0002 AT4G20930 451 / 3e-160 6-phosphogluconate dehydrogenase family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0106 [poplar] [flax] 6PGD_C PF14833 [poplar] [flax] NAD_binding_11 NAD-binding of NADP-dependent 3-hydroxyisobutyrate dehydrogenase
Representative CDS sequence Show only first row Show all	>Potri.003G038450.1 pacid=42787133 polypeptide=Potri.003G038450.1.p locus=Potri.003G038450 ID=Potri.003G038450.1.v4.1 annot-version=v4.1 ATGGGTTGCTTGGTACTGTATCCTATTTTTCTCCTCGAAACTAGTTACACTTTTTTGTTCACATGGATTTTTAATACTATCCAGTCAAGATTTTACCTTG GGGAAGTCGGAAATGGGGCTGCAATGAAACTTATTGTCAACATGATCATGGGCAGTATGATGGCAACCTTTTCTGAAGGGTTGCTTCTCAGCGAGAAAGG AGGACTGGACCCAAATGTACTGGTTGAGGTAGTGTCACTGGGTGCCATTAGTGCACCGATGTATTCGCTGAAAGGTCCATCAATGGTCAAATCTCTATAC CCCACTGCTTTTCCCTTAAAGCATCAGCAGAAGGACATGAGACTTGCCCTGGGATTAGCAGAATCTGTTTCCCAACCCACTCCAATTGCAGCAGCTGCAA ATGAACTATACAAGGTAGCAAAAAGTCACGGGCTTAGCGATAGTGATTTTTCAGCAGTGATTGAAGCACTCAAAGGAAAAGTGCAATCCTGA
AA sequence Show only first row Show all	>Potri.003G038450.1 pacid=42787133 polypeptide=Potri.003G038450.1.p locus=Potri.003G038450 ID=Potri.003G038450.1.v4.1 annot-version=v4.1 MGCLVLYPIFLLETSYTFLFTWIFNTIQSRFYLGEVGNGAAMKLIVNMIMGSMMATFSEGLLLSEKGGLDPNVLVEVVSLGAISAPMYSLKGPSMVKSLY PTAFPLKHQQKDMRLALGLAESVSQPTPIAAAANELYKVAKSHGLSDSDFSAVIEALKGKVQS

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT1G17650		GR2, GLYR2	glyoxylate reductase 2 (.1)		Potri.003G038450 [exp]	0	1
AT3G18890		AtTic62	translocon at the inner envelo...		Potri.004G150300 [exp]	2.23	0.9682	Pt-TIC62.1
AT3G18890		AtTic62	translocon at the inner envelo...		Potri.009G111323 [exp]	5.74	0.9577
AT1G15980		PnsB1, NDH48, N...	Photosynthetic NDH subcomplex...		Potri.001G044300 [exp]	7.74	0.9483
					Potri.004G048000 [exp]	10.95	0.9447
AT1G17650		GR2, GLYR2	glyoxylate reductase 2 (.1)		Potri.003G040800 [exp]	12.00	0.9552
AT1G52510			alpha/beta-Hydrolases superfam...		Potri.001G201500 [exp]	12.24	0.9476
AT5G20230		SAG14, ATBCB	SENESCENCE ASSOCIATED GENE 14,...		Potri.006G067200 [exp]	13.56	0.9213
AT1G25440	CO	COL16	B-box type zinc finger protein...		Potri.015G054600 [exp]	14.00	0.9351
AT3G50820		OEC33, PSBO2, P...	OXYGEN EVOLVING COMPLEX SUBUNI...		Potri.005G130400 [exp]	14.73	0.9459	Pt-PSBO.1
AT5G49920			Octicosapeptide/Phox/Bem1p fam...		Potri.004G224500 [exp]	17.66	0.9369

Compare expression of checked genes

Potri.003G038450 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.